ZSCAN12

Basic Information

Gene Symbol	ZSCAN12
Entrez Id	9753
Position	chr6:28346598..28367544
Description	zinc finger and SCAN domain containing 12
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1005125	6:28367355	A/G	ZSCAN12	intron	1.000	0.92811	0.0109	6.471E-12		1b
rs111669150	6:28362987	T/C	ZSCAN12	intron	1.000	1.03056	0.0256	0.2396		7
rs13213152	6:28349698	A/G	ZSCAN12	intron	1.010	1.24334	0.0199	5.757E-28		7
rs13213986	6:28358009	A/T	ZSCAN12	intron,untranslated-3	0.999	0.80388	0.0199	6.945E-28		6
rs1361385	6:28358320	A/G	ZSCAN12	intron,missense	1.000	1.08752	0.0117	7.047E-13		7
rs142968511	6:28363835	T/C	ZSCAN12	intron	0.944	0.99471	0.0583	0.9273		-
rs1556957	6:28349926	A/G	ZSCAN12	intron,near-gene-3	1.010	0.98857	0.0227	0.6112		6
rs1591913	6:28351728	T/C	ZSCAN12	intron	1.000	0.91934	0.0117	6.236E-13		4
rs16894060	6:28362471	T/C	ZSCAN12	intron	1.000	1.08992	0.0117	2.022E-13		7
rs17314224	6:28354946	T/C	ZSCAN12	intron	1.010	0.98797	0.0227	0.5951		6
rs17392982	6:28360571	T/C	ZSCAN12	intron	1.010	1.01227	0.0227	0.5898		5
rs17393066	6:28364793	A/G	ZSCAN12	intron	1.000	0.97045	0.0256	0.2421		5
rs180796020	6:28362510	A/C	ZSCAN12	intron	0.988	1.06855	0.0592	0.2627		-
rs2041230	6:28365515	T/C	ZSCAN12	intron	1.000	1.08839	0.0117	4.339E-13		1f
rs2072318	6:28348418	A/G	ZSCAN12	intron,ncRNA	1.010	0.98768	0.0227	0.5847		5
rs2072319	6:28348660	T/C	ZSCAN12	intron	1.010	0.98768	0.0227	0.5849		7
rs2232421	6:28366422	T/C	ZSCAN12	intron	0.909	1.19925	0.0421	0.00001575		7
rs2232422	6:28366262	A/G	ZSCAN12	intron	1.010	0.96137	0.0196	0.04433		5
rs2232423	6:28366151	A/G	ZSCAN12	ncRNA,missense	0.998	1.24483	0.0199	4.317E-28		5
rs2232426	6:28360659	C/G	ZSCAN12	intron	0.998	0.80292	0.0199	3.447E-28		5
rs2232427	6:28359709	T/G	ZSCAN12	intron	1.000	1.10661	0.0126	8.901E-16		7
rs2232428	6:28359700	T/C	ZSCAN12	intron	1.000	0.96532	0.0176	0.04511		7
rs2232429	6:28359632	T/G	ZSCAN12	intron	0.999	1.24520	0.0199	3.661E-28		7
rs2232430	6:28359186	T/C	ZSCAN12	ncRNA,missense	1.010	0.99920	0.0192	0.9651		7
rs2232434	6:28358893	T/C	ZSCAN12	ncRNA,missense	1.010	0.98778	0.0227	0.5879		5
rs2232438	6:28350479	A/C	ZSCAN12	intron	1.010	0.98748	0.0227	0.5799		6
rs2531825	6:28349264	T/C	ZSCAN12	intron	1.000	0.92941	0.0109	1.594E-11		6
rs28360638	6:28362329	T/C	ZSCAN12	intron	1.000	0.91879	0.0117	4.235E-13		5
rs28505234	6:28350772	A/G	ZSCAN12	intron	1.000	1.01481	0.0149	0.3233		6
rs2859348	6:28359170	A/G	ZSCAN12	coding-synon,ncRNA	0.970	1.06513	0.0108	5.465E-9		7
rs2859359	6:28362708	A/G	ZSCAN12	intron	1.010	1.01136	0.0530	0.8305		7
rs2859379	6:28358195	T/C	ZSCAN12	intron,untranslated-3	0.950	0.99511	0.0285	0.8648		7
rs34546986	6:28362309	A/G	ZSCAN12	intron	0.998	0.80364	0.0200	6.248E-28		5
rs34871267	6:28364232	A/G	ZSCAN12	intron	0.998	0.80388	0.0200	7.281E-28		7
rs36092177	6:28357807	T/C	ZSCAN12	intron,untranslated-3	0.995	0.80276	0.0199	2.732E-28		7
rs3799499	6:28354250	T/G	ZSCAN12	intron	1.010	0.90402	0.0126	1.122E-15		7
rs3799500	6:28352657	C/G	ZSCAN12	intron,untranslated-3	1.000	1.01603	0.0148	0.2833		7
rs41270579	6:28348109	C/G	ZSCAN12	ncRNA	1.000	0.98797	0.0219	0.5822		5
rs67981811	6:28354835	C/G	ZSCAN12	intron	0.998	1.24471	0.0199	4.528E-28		7
rs72854546	6:28350969	A/G	ZSCAN12	intron	1.000	0.98886	0.0219	0.6091		4
rs73742555	6:28347713	T/C	ZSCAN12	ncRNA	1.010	1.01248	0.0227	0.5846		6
rs73742558	6:28360439	T/G	ZSCAN12	intron	1.010	0.98797	0.0227	0.595		5
rs74525464	6:28355671	T/C	ZSCAN12	intron	1.000	0.96089	0.0196	0.04154		7
rs75349236	6:28355731	A/G	ZSCAN12	intron	0.989	0.96831	0.0400	0.4212		7
rs77082598	6:28355710	T/G	ZSCAN12	intron	1.010	0.96802	0.0590	0.5821		7
rs78680299	6:28364027	A/C	ZSCAN12	intron	0.994	1.04352	0.0492	0.3862		6
rs9461458	6:28355875	T/C	ZSCAN12	intron	1.000	0.91916	0.0117	5.689E-13		7
rs9461459	6:28361916	T/C	ZSCAN12	intron	1.000	1.08839	0.0117	4.252E-13		4
rs9468364	6:28355711	A/T	ZSCAN12	intron	1.000	1.02378	0.0248	0.3436		7
rs9468365	6:28357966	A/T	ZSCAN12	intron,untranslated-3	1.000	1.08828	0.0117	4.583E-13		7
rs9468366	6:28360017	T/C	ZSCAN12	intron	0.997	1.09035	0.0117	1.392E-13		6
rs9468367	6:28360246	A/C	ZSCAN12	intron	1.000	0.91888	0.0117	4.673E-13		5
rs9468368	6:28364949	A/G	ZSCAN12	intron	1.000	0.91870	0.0117	4.112E-13		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information