| SNP | Chr | Ref/Alt | Location | Nearby Genes | Disrupted TFs |
|---|---|---|---|---|---|
| rs301792 | chr1 | A/G | intronic | RERE | POLR2A |
| rs159961 | chr1 | C/T | intronic | RERE | REST |
| rs11263852 | chr1 | G/C | upstream;downstream | ADPRHL2/TEKT2 | CTCF/RAD21/SIN3A |
| rs2231318 | chr1 | C/T | intronic | TRAPPC3 | POLR2A |
| rs74105186 | chr1 | T/C | intronic | DPYD | RAD21 |
| rs2027349 | chr1 | G/A | UTR5 | VPS45 | CTCF/TAF1 |
| rs78681982 | chr1 | G/A | intronic | PLEKHO1 | POLR2A |
| rs72694957 | chr1 | C/T | intergenic | PLEKHO1/ANP32E | REST |
| rs16937 | chr1 | A/G | intronic | CNTN2 | CTCF |
| rs12136320 | chr1 | T/C | downstream | DSTYK | CTCF/POLR2A/RAD21/SMC3 |
| rs340836 | chr1 | C/T | intronic | PROX1 | CTCF |
| rs3904682 | chr1 | T/A | UTR5 | SDCCAG8 | POLR2A |
| rs78751650 | chr10 | C/T | intergenic | RTKN2/LOC283045 | REST |
| rs10786700 | chr10 | C/T | intronic | SUFU | REST |
| rs12416331 | chr10 | T/A | intronic | NT5C2 | GATA3 |
| rs12146541 | chr11 | G/C | ncRNA_intronic | TMX2-CTNND1 | SMC3 |
| rs494791 | chr11 | A/C | exonic | CCDC90B | POLR2A |
| rs11233566 | chr11 | G/T | intergenic | CCDC90B/DLG2 | POLR2A |
| rs3781884 | chr11 | A/G | intronic | TTC12 | CTCF |
| rs10860964 | chr12 | T/C | intergenic | LOC101929058/C12orf42 | RAD21 |
| rs7304243 | chr12 | C/T | intergenic | IFT81/ATP2A2 | POLR2A |
| rs78866909 | chr12 | C/T | intronic | C12orf65 | CTCF/RAD21/SMC3 |
| rs4759413 | chr12 | T/A | downstream | C12orf65 | POLR2A |
| rs76514049 | chr12 | G/A | intronic | CDK2AP1 | YY1 |
| rs60754073 | chr12 | C/G | downstream | MIR8072 | REST |
| rs28594416 | chr12 | T/C | upstream | MIR8072 | POLR2A |
| rs11160502 | chr14 | G/A | intronic | BCL11B | SMC3 |
| rs10083370 | chr14 | G/A | ncRNA_intronic | LINC00637 | POLR2A/TAF1 |
| rs10083367 | chr14 | C/G | ncRNA_intronic | LINC00637 | POLR2A/TAF1 |
| rs62021888 | chr15 | G/T | exonic | PLCB2 | CTCF |
| rs3743078 | chr15 | C/G | intronic | CHRNA3 | POLR2A |
| rs71196093/rs72748702 | chr15 | A/G | intergenic | GOLGA6L4/LOC103171574 | CTCF |
| rs12912934 | chr15 | C/T | ncRNA_exonic | LINC00933 | CTCF/RAD21 |
| rs10795 | chr15 | G/A | ncRNA_exonic | SCAND2P | CTCF |
| rs2856268 | chr15 | T/C | upstream | POLG | EP300 |
| rs4932217 | chr15 | A/C | intergenic | POLG/MIR9-3HG | MAX |
| rs4786494 | chr16 | G/A | UTR3 | DNAJA3 | POLR2A |
| rs2270363 | chr16 | A/G | intronic | HMOX2 | MAX/USF1 |
| rs3814880 | chr16 | T/C | intronic | DOC2A | POLR2A |
| rs11861362 | chr16 | C/G | intronic | SMPD3 | RAD21 |
| rs3096324 | chr16 | G/A | intronic | ANKRD11 | CTCF |
| rs4785581 | chr16 | C/A | intronic | DPEP1 | MAX/USF1 |
| rs4790347 | chr17 | G/A | intronic | YWHAE | POLR2A |
| rs10852932 | chr17 | G/T | intronic | SMG6 | EP300 |
| rs4924832 | chr17 | T/C | intronic | DRC3 | CTCF/SMC3 |
| rs2974999 | chr17 | T/G | intronic | DRG2 | CTCF/RAD21/USF1 |
| rs78532287 | chr17 | A/G | UTR5 | SPECC1 | SMC3 |
| rs61660810 | chr17 | C/T | intronic | SPECC1 | EP300/NFIC |
| rs11081564 | chr18 | A/G | intergenic | CTDP1/KCNG2 | REST/SIN3A |
| rs3794993 | chr19 | C/A | intronic | GATAD2A | POLR2A |
| rs2304206 | chr19 | G/A | UTR5 | BCL2L12 | ELF1 |
| rs2304204 | chr19 | T/C | UTR5 | BCL2L12/IRF3 | POLR2A |
| rs13003881 | chr2 | G/A | intronic | EFR3B | POLR2A |
| rs12473400 | chr2 | G/T | intronic | RBKS | POLR2A |
| rs34419497 | chr2 | C/T | intergenic | SPR/EMX1 | CTCF |
| rs74863866 | chr2 | G/A | intronic | RAB11FIP5 | CTCF |
| rs41285977 | chr2 | C/T | intronic | CCT7 | REST |
| rs7579996 | chr2 | C/A | UTR5 | SEPT10 | POLR2A/REST/SIN3A |
| rs796364 | chr2 | C/A | upstream | FTCDNL1 | CTCF/RAD21 |
| rs281759 | chr2 | T/C | intronic | C2orf69 | FOXP2 |
| rs3769481 | chr2 | A/G | intronic | SPATS2L | CTCF/RAD21 |
| rs2551945 | chr2 | C/T | intronic | METTL21A | REST |
| rs2385395 | chr2 | G/T | UTR3 | FAM134A | POLR2A |
| rs2675960 | chr2 | G/T | intronic | NGEF | EZH2 |
| rs9611198 | chr22 | A/C | intergenic | RPS19BP1/CACNA1I | CTCF |
| rs732381 | chr22 | A/T | intronic | CACNA1I | GATA2 |
| rs5751195 | chr22 | A/C | intronic | SEPT3 | POLR2A |
| rs8135801 | chr22 | A/G | upstream;downstream | SMDT1/FAM109B | POLR2A |
| rs2269524 | chr22 | T/G | UTR5 | SMDT1 | POLR2A |
| rs1801311 | chr22 | G/A | exonic | NDUFA6 | POLR2A/TAF1/YY1 |
| rs6002621 | chr22 | A/C | ncRNA_intronic | NDUFA6-AS1 | SMC3 |
| rs28633410 | chr22 | T/C | upstream | CYP2D6/LOC101929829 | POLR2A |
| rs9306356 | chr22 | T/C | intronic | TCF20 | POLR2A/REST |
| rs138833 | chr22 | A/G | intronic | BRD1 | CTCF |
| rs910800 | chr22 | C/T | exonic | ZBED4 | RAD21 |
| rs1321 | chr22 | T/C | UTR3 | ALG12 | GATA2 |
| rs9616378 | chr22 | A/G | UTR5 | ALG12 | POLR2A/REST/SIN3A/TAF1 |
| rs9616382 | chr22 | C/T | intronic | CRELD2 | REST |
| rs7410601 | chr22 | C/T | intronic | CRELD2 | CTCF |
| rs9985472 | chr3 | A/G | intronic | TBC1D5 | USF1 |
| rs13323091 | chr3 | C/G | intergenic | RBMS3/TGFBR2 | POLR2A |
| rs28365992 | chr3 | T/C | UTR5 | HYAL1 | POLR2A |
| rs2535629 | chr3 | G/A | intronic | ITIH3 | CTCF |
| rs3773744 | chr3 | T/C | intronic | TKT | REST/SIN3A |
| rs3773745 | chr3 | A/T | intronic | TKT | POLR2A/RAD21 |
| rs6795127 | chr3 | C/T | intronic | DCP1A | REST |
| rs1499894 | chr3 | C/T | intronic | FOXP1 | POLR2A |
| rs485315 | chr3 | C/T | intergenic | OTOL1/LINC01192 | POLR2A |
| rs308699 | chr3 | G/A | intergenic | OTOL1/LINC01192 | CTCF |
| rs34455584 | chr3 | A/G | upstream | FXR1 | CTCF/RAD21 |
| rs1805579 | chr3 | T/C | intronic | FXR1 | REST |
| rs7662342 | chr4 | G/A | intergenic | TBC1D19/STIM2 | RAD21 |
| rs393223 | chr4 | G/A | intronic | MANBA | PBX3 |
| rs223390 | chr4 | A/G | UTR5 | UBE2D3 | REST |
| rs223387 | chr4 | C/G | ncRNA_intronic | LOC105377348 | RAD21 |
| rs13113099 | chr4 | A/G | intronic | SLC9B2 | USF1 |
| rs3797040 | chr4 | C/T | upstream | CLCN3 | TAF1 |
| rs10940235 | chr5 | G/T | intergenic | NONE/EMB | PBX3 |
| rs2438345 | chr5 | T/C | intronic | ADGRV1 | CTCF/RAD21/SMC3 |
| rs10038801 | chr5 | T/C | intronic | SLCO6A1 | CTCF/RAD21 |
| rs790475 | chr5 | C/T | intergenic | CTXN3/LINC01184 | REST |
| rs982085 | chr5 | C/G | intronic | REEP2 | CTCF |
| rs778593 | chr5 | T/C | UTR5 | NDUFA2 | USF1 |
| rs3822346 | chr5 | C/T | exonic | PCDHA4 | CTCF |
| rs57336534 | chr5 | T/A | intergenic | NMUR2/LINC01470 | REST |
| rs58848914 | chr5 | C/T | intergenic | MFAP3/GALNT10 | SMC3 |
| rs6871683 | chr5 | T/C | intronic | GALNT10 | GATA2 |
| rs3131340/rs115800871 | chr6 | T/G | intergenic | ZBED9/LINC01623 | REST |
| rs13193668 | chr6 | G/T | intronic | EYS | NFIC |
| rs9362397 | chr6 | C/T | intergenic | CGA/ZNF292 | CTCF |
| rs117178087 | chr6 | C/T | UTR5 | FUT9 | CTCF/RAD21 |
| rs3813498 | chr6 | C/T | intronic | FOXO3 | CTCF |
| rs6919476 | chr6 | G/C | intronic | FYN | POLR2A |
| rs61202914 | chr6 | G/A | intronic | FYN | CTCF |
| rs9373388 | chr6 | C/T | intronic | AIG1 | FOSL2/PBX3 |
| rs3804536 | chr6 | A/G | intronic | AIG1 | CTCF/RAD21 |
| rs2711116 | chr7 | T/C | intergenic | NPY/MPP6 | CTCF |
| rs12665974 | chr7 | C/T | intronic | DFNA5 | TEAD4 |
| rs321964 | chr7 | G/A | intronic | MAGI2 | PBX3 |
| rs322004 | chr7 | T/A | intronic | MAGI2 | POLR2A |
| rs2905232 | chr7 | C/G | intergenic | LINC00998/PPP1R3A | CTCF |
| rs7796648 | chr7 | T/C | intergenic | LINC00998/PPP1R3A | POLR2A |
| rs6992091 | chr8 | G/A | intergenic | FAM86B3P/SGK223 | TCF12 |
| rs7014953 | chr8 | A/C | intergenic | FAM86B3P/SGK223 | USF1 |
| rs486781 | chr8 | A/G | intergenic | CLDN23/MFHAS1 | POLR2A |
| rs12114661 | chr8 | G/A | intronic | TNKS | POLR2A |
| rs11986122 | chr8 | C/G | intronic | MSRA | REST |
| rs11993089 | chr8 | G/T | intronic | MSRA | POLR2A/REST |
| rs1565231 | chr8 | A/G | intronic | PSD3 | CTCF |
| rs716881 | chr8 | T/G | intergenic | MMP16/LOC101929709 | EP300 |
| rs1352318 | chr8 | G/A | intergenic | MMP16/LOC101929709 | CTCF/RAD21/SMC3 |
| rs7012106 | chr8 | C/G | intronic | FAM83H | CTCF |
| SNP | Chr | Ref/Alt | Location | Nearby Genes | Disrupted TFs |
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