ZKSCAN3

Basic Information

Gene Symbol	ZKSCAN3
Entrez Id	80317
Position	chr6:28317691..28336954
Description	zinc finger with KRAB and SCAN domains 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs112181044	6:28329677	T/C	ZKSCAN3	intron	1.000	1.01066	0.0235	0.6507		7
rs115286089	6:28326327	A/G	ZKSCAN3	intron,near-gene-5	0.764	0.99920	0.0347	0.9814		7
rs116406755	6:28326431	A/G	ZKSCAN3	intron,near-gene-5	0.991	0.96262	0.0200	0.05647		7
rs11752496	6:28335903	C/G	ZKSCAN3	untranslated-3	0.979	1.08796	0.0119	1.225E-12		5
rs12662767	6:28327942	A/T	ZKSCAN3	intron,near-gene-5	0.768	0.99392	0.0357	0.8649		6
rs13199081	6:28331834	T/C	ZKSCAN3	intron	1.000	1.10617	0.0126	1.208E-15		7
rs13201753	6:28331128	A/C	ZKSCAN3	missense	0.841	1.08405	0.0139	6.369E-9		6
rs13214023	6:28332141	A/G	ZKSCAN3	intron	1.010	0.80670	0.0198	2.26E-27		6
rs144931476	6:28326535	A/C	ZKSCAN3	intron,near-gene-5	0.993	1.01268	0.0219	0.5649		-
rs1555046	6:28329037	C/G	ZKSCAN3	intron	1.010	0.98926	0.0236	0.6464		6
rs1555047	6:28328683	A/G	ZKSCAN3	intron	0.983	1.00592	0.0240	0.8049		5
rs16894011	6:28332453	A/T	ZKSCAN3	intron	1.000	1.02542	0.0246	0.307		5
rs17313059	6:28333396	T/C	ZKSCAN3	coding-synon	1.000	0.99382	0.0233	0.7889		3a
rs17856167	6:28331094	A/G	ZKSCAN3	missense	1.000	1.02368	0.0246	0.3417		7
rs185739336	6:28332366	T/C	ZKSCAN3	intron	0.987	1.06705	0.0592	0.2734		-
rs2027362	6:28332698	T/C	ZKSCAN3	intron	1.000	0.99213	0.0234	0.7371		7
rs213230	6:28330264	A/G	ZKSCAN3	intron	1.010	1.10683	0.0125	4.73E-16		7
rs213231	6:28326988	T/G	ZKSCAN3	intron,near-gene-5	1.010	1.00934	0.0216	0.6653		5
rs213232	6:28326490	A/G	ZKSCAN3	intron,near-gene-5	0.984	1.07659	0.0110	2.282E-11		6
rs213233	6:28325675	A/G	ZKSCAN3	intron	1.010	1.01613	0.0157	0.3059		7
rs34924864	6:28332006	T/G	ZKSCAN3	intron	1.000	1.09002	0.0118	2.3E-13		7
rs35191424	6:28334831	T/C	ZKSCAN3	near-gene-3,untranslated-3	0.998	1.09024	0.0118	2.201E-13		6
rs35353359	6:28324378	T/C	ZKSCAN3	intron	1.010	0.80565	0.0199	1.736E-27		4
rs35875412	6:28331818	T/C	ZKSCAN3	intron	1.010	0.87845	0.0139	1.101E-20		7
rs60184496	6:28330431	A/G	ZKSCAN3	intron	1.000	0.99045	0.0234	0.6816		7
rs62401453	6:28337344	A/G	ZKSCAN3	near-gene-3	0.787	0.92895	0.0381	0.05272		7
rs6921919	6:28325201	C/G	ZKSCAN3	intron	1.010	1.13394	0.0135	1.334E-20		1f
rs6922111	6:28325308	T/C	ZKSCAN3	intron	1.010	0.88241	0.0135	1.945E-20		6
rs71559077	6:28328065	A/G	ZKSCAN3	intron,near-gene-5	0.969	0.98847	0.0211	0.5804		5
rs76980205	6:28336692	A/G	ZKSCAN3	untranslated-3	0.993	1.04185	0.0488	0.4017		5
rs7750526	6:28336004	A/T	ZKSCAN3	untranslated-3	1.000	1.10594	0.0127	1.908E-15		6
rs7773018	6:28331331	T/C	ZKSCAN3	intron	0.768	1.00300	0.0346	0.9299		7
rs78320307	6:28329610	T/C	ZKSCAN3	intron	0.958	1.02891	0.0410	0.4866		6
rs78512949	6:28328293	A/G	ZKSCAN3	intron,untranslated-5	1.000	1.03056	0.0267	0.2603		6
rs78769075	6:28328064	T/C	ZKSCAN3	intron,near-gene-5	0.986	0.97404	0.0394	0.5041		5
rs9461455	6:28329731	T/C	ZKSCAN3	intron	1.000	0.91787	0.0118	3.121E-13		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information