WHSC1L1

Basic Information

Gene Symbol	WHSC1L1
Entrez Id	54904
Position	chr8:38132560..38239790
Description	Wolf-Hirschhorn syndrome candidate 1-like 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10095753	8:38236890	A/G	WHSC1L1	intron	0.993	0.93941	0.0128	1.01E-6		6
rs10099378	8:38235387	T/C	WHSC1L1	intron	0.997	0.93998	0.0128	1.234E-6		7
rs10100090	8:38134877	A/C	WHSC1L1	intron	0.989	0.94148	0.0128	2.362E-6		7
rs10100894	8:38143357	T/C	WHSC1L1	intron	0.991	1.05919	0.0126	4.907E-6		3a
rs10101145	8:38143572	T/G	WHSC1L1	intron	0.991	1.05919	0.0126	4.901E-6		5
rs10102341	8:38161469	T/C	WHSC1L1	intron	0.991	1.05929	0.0126	4.761E-6		5
rs10107763	8:38232738	T/G	WHSC1L1	intron	0.995	0.94356	0.0126	3.709E-6		5
rs10109023	8:38143540	T/G	WHSC1L1	intron	0.989	0.94393	0.0126	4.441E-6		5
rs10156310	8:38209129	A/T	WHSC1L1	intron	0.907	1.06833	0.0132	5.865E-7		7
rs10448063	8:38210275	A/G	WHSC1L1	intron	0.993	0.94441	0.0126	5.337E-6		7
rs10958606	8:38149404	T/C	WHSC1L1	intron	0.993	0.94082	0.0128	1.773E-6		5
rs111260066	8:38171292	T/C	WHSC1L1	intron	0.713	1.03800	0.0463	0.4195		7
rs111422868	8:38221030	T/C	WHSC1L1	intron	0.761	1.04833	0.0478	0.3231		5
rs111507808	8:38227861	T/C	WHSC1L1	intron	0.786	1.02768	0.0384	0.4766		5
rs111569526	8:38172334	T/C	WHSC1L1	intron	0.646	0.84645	0.0479	0.0004961		2b
rs111684217	8:38211587	T/C	WHSC1L1	intron	0.625	1.00632	0.0548	0.9086		4
rs111737759	8:38135074	T/C	WHSC1L1	intron	0.683	0.91256	0.0499	0.06666		7
rs112231065	8:38150477	A/G	WHSC1L1	intron	0.647	1.04404	0.0544	0.4278		7
rs112419852	8:38150516	A/C	WHSC1L1	intron	0.781	0.97716	0.0383	0.5462		7
rs112825594	8:38224270	T/C	WHSC1L1	intron	0.622	1.01745	0.0545	0.7514		6
rs113092086	8:38143539	T/C	WHSC1L1	intron	0.649	0.85223	0.0473	0.0007213		5
rs113248778	8:38164270	T/C	WHSC1L1	intron	0.624	1.00411	0.0550	0.941		7
rs113480893	8:38234961	A/G	WHSC1L1	intron	0.696	1.03045	0.0588	0.6093		5
rs113682951	8:38202468	T/C	WHSC1L1	intron	0.765	1.01877	0.0389	0.6325		5
rs116784230	8:38228241	A/G	WHSC1L1	intron	0.624	1.06524	0.0467	0.1754		5
rs116919107	8:38185550	A/T	WHSC1L1	intron	0.828	1.02932	0.0413	0.4845		7
rs117236346	8:38161586	C/G	WHSC1L1	intron	0.789	0.96204	0.0418	0.3548		5
rs117404237	8:38213632	A/G	WHSC1L1	intron	0.711	1.09417	0.0440	0.04076		6
rs11777811	8:38221468	T/G	WHSC1L1	intron	0.997	1.06428	0.0128	1.085E-6		6
rs11785041	8:38206242	T/C	WHSC1L1	intron	0.995	0.94026	0.0128	1.433E-6		7
rs117880184	8:38207119	T/C	WHSC1L1	intron	0.701	0.90276	0.0514	0.04656		7
rs11985168	8:38160043	T/C	WHSC1L1	intron	0.993	0.94026	0.0128	1.46E-6		6
rs12056642	8:38165072	A/G	WHSC1L1	intron	0.994	1.06322	0.0128	1.556E-6		5
rs12114353	8:38192044	A/G	WHSC1L1	intron	0.992	1.05908	0.0126	5.002E-6		6
rs12386951	8:38152592	C/G	WHSC1L1	intron	0.929	1.06460	0.0134	2.974E-6		7
rs12386976	8:38152444	A/G	WHSC1L1	intron	0.970	1.06067	0.0127	3.545E-6		6
rs12674515	8:38137530	A/G	WHSC1L1	intron	0.990	1.05876	0.0126	5.737E-6		5
rs12677360	8:38227564	A/G	WHSC1L1	intron	0.997	0.93951	0.0128	1.053E-6		6
rs12677788	8:38203423	A/G	WHSC1L1	intron	0.992	0.94412	0.0126	4.78E-6		7
rs12681196	8:38236594	C/G	WHSC1L1	intron	0.996	1.06471	0.0128	9.265E-7		6
rs13264830	8:38141173	T/C	WHSC1L1	intron	0.829	0.96580	0.0215	0.1049		6
rs139389441	8:38168988	T/G	WHSC1L1	intron	0.724	1.03066	0.0333	0.365		-
rs139804623	8:38221280	T/G	WHSC1L1	intron	0.713	0.95590	0.0582	0.4387		-
rs139987980	8:38161064	A/G	WHSC1L1	intron	0.840	0.95590	0.0471	0.3382		-
rs141471977	8:38225226	T/C	WHSC1L1	intron	0.654	1.02829	0.0254	0.2722		-
rs141622276	8:38148006	T/C	WHSC1L1	coding-synon	0.640	1.02173	0.0407	0.5979		-
rs142836804	8:38231514	T/C	WHSC1L1	intron	0.748	0.97142	0.0402	0.4704		-
rs144064663	8:38164619	T/C	WHSC1L1	intron	0.644	1.05443	0.0436	0.2243		-
rs144269447	8:38234750	T/C	WHSC1L1	intron	0.695	0.97132	0.0239	0.2244		-
rs145458997	8:38145072	T/G	WHSC1L1	intron	0.764	1.04949	0.0487	0.3216		-
rs145583989	8:38228803	C/G	WHSC1L1	intron	0.629	1.01613	0.0457	0.7267		-
rs147238012	8:38168140	T/C	WHSC1L1	intron	0.696	1.02327	0.0294	0.4353		-
rs147681629	8:38145424	T/C	WHSC1L1	intron	0.810	1.06354	0.0471	0.1914		-
rs150831097	8:38144237	A/G	WHSC1L1	intron	0.777	0.98383	0.0597	0.785		-
rs150979096	8:38160853	A/G	WHSC1L1	intron	0.810	0.94035	0.0471	0.1919		-
rs1599918	8:38164287	A/G	WHSC1L1	intron	0.994	0.94064	0.0128	1.692E-6		7
rs16887324	8:38166401	T/G	WHSC1L1	intron	0.994	0.94092	0.0128	1.871E-6		6
rs16887325	8:38173375	C/G	WHSC1L1	intron	0.992	0.94422	0.0126	4.913E-6		6
rs16887340	8:38223697	T/C	WHSC1L1	intron	0.997	0.94016	0.0128	1.355E-6		7
rs16887343	8:38226277	A/G	WHSC1L1	intron	0.995	1.05823	0.0126	6.474E-6		1b
rs185811622	8:38162945	A/G	WHSC1L1	missense	0.712	0.85505	0.0494	0.001514		-
rs186307250	8:38195837	A/T	WHSC1L1	intron	0.636	1.02030	0.0579	0.7287		-
rs186690547	8:38234056	T/C	WHSC1L1	intron	0.637	1.09757	0.0649	0.1513		-
rs190676759	8:38137055	T/C	WHSC1L1	intron	0.607	0.98511	0.0630	0.8117		-
rs191110909	8:38207492	T/C	WHSC1L1	intron	0.646	0.93651	0.0540	0.2242		-
rs191208560	8:38152624	A/T	WHSC1L1	intron	0.645	1.02696	0.0478	0.5784		-
rs191332826	8:38203822	A/C	WHSC1L1	intron	0.612	1.04216	0.0516	0.4231		-
rs192886430	8:38189403	A/G	WHSC1L1	intron	0.729	0.99352	0.0440	0.8827		-
rs1975132	8:38217612	C/G	WHSC1L1	intron	0.989	1.05993	0.0126	3.993E-6		5
rs2130033	8:38217741	T/C	WHSC1L1	intron	0.985	1.05897	0.0127	6.184E-6		5
rs2171616	8:38163303	A/T	WHSC1L1	intron	0.991	0.94403	0.0126	4.701E-6		7
rs2234549	8:38188013	A/G	WHSC1L1	intron	0.992	1.05897	0.0126	5.18E-6		7
rs2234555	8:38178767	A/C	WHSC1L1	intron	0.995	0.94045	0.0128	1.51E-6		5
rs2234558	8:38176435	T/G	WHSC1L1	coding-synon	0.802	0.97814	0.0299	0.4602		7
rs2280847	8:38176187	T/G	WHSC1L1	intron	0.992	1.05929	0.0126	4.56E-6		5
rs28439472	8:38155167	A/G	WHSC1L1	intron	0.991	0.94450	0.0126	5.562E-6		6
rs28460372	8:38200221	T/G	WHSC1L1	intron	0.986	1.05792	0.0126	8.305E-6		7
rs28634296	8:38207690	A/G	WHSC1L1	intron	0.990	1.05961	0.0126	4.229E-6		6
rs28674538	8:38198789	A/G	WHSC1L1	intron	0.992	1.05929	0.0126	4.508E-6		6
rs2932003	8:38141766	A/G	WHSC1L1	intron	0.873	1.02296	0.0376	0.5461		5
rs2932005	8:38231874	T/C	WHSC1L1	intron	0.978	0.95495	0.0113	0.0000435		7
rs2955594	8:38198505	A/G	WHSC1L1	intron	0.874	0.97746	0.0376	0.5432		7
rs2956728	8:38168699	T/C	WHSC1L1	intron	0.971	0.99074	0.0180	0.6032		6
rs2956729	8:38170948	A/G	WHSC1L1	intron	0.735	1.02583	0.0538	0.6348		6
rs2956731	8:38190769	T/G	WHSC1L1	intron	0.943	1.01816	0.0201	0.3697		7
rs2978078	8:38227245	T/C	WHSC1L1	intron	0.905	1.00723	0.0216	0.7399		7
rs34504029	8:38145420	T/C	WHSC1L1	intron	0.828	0.96406	0.0215	0.08903		7
rs36105509	8:38139729	A/C	WHSC1L1	intron	0.823	1.03821	0.0215	0.08094		7
rs58279725	8:38212611	T/C	WHSC1L1	intron	0.988	1.05982	0.0125	3.365E-6		5
rs59978327	8:38183595	A/G	WHSC1L1	intron	0.989	0.93960	0.0129	1.297E-6		7
rs60312002	8:38193013	C/G	WHSC1L1	intron	0.984	1.06290	0.0129	2.228E-6		5
rs60464825	8:38225171	A/G	WHSC1L1	intron	0.934	0.99930	0.0172	0.9693		7
rs62503952	8:38142459	A/G	WHSC1L1	intron	0.776	1.02286	0.0168	0.1768		5
rs62503953	8:38155738	A/G	WHSC1L1	intron	0.753	1.03438	0.0178	0.05766		7
rs62503957	8:38224076	T/C	WHSC1L1	intron	0.665	1.09812	0.0282	0.0008838		7
rs6474268	8:38214506	A/G	WHSC1L1	intron	0.993	1.05908	0.0126	5.003E-6		6
rs6984464	8:38141379	A/G	WHSC1L1	intron	0.990	0.94422	0.0126	5.124E-6		6
rs6989666	8:38135075	A/G	WHSC1L1	intron	0.767	1.02204	0.0192	0.2567		7
rs72630604	8:38198203	A/C	WHSC1L1	intron	0.990	1.05929	0.0125	4.265E-6		7
rs72630608	8:38200639	A/G	WHSC1L1	intron	0.775	1.01755	0.0189	0.3575		7
rs72630609	8:38201232	T/C	WHSC1L1	intron	0.995	0.93988	0.0128	1.209E-6		6
rs72630610	8:38205881	A/C	WHSC1L1	intron	0.776	1.01643	0.0189	0.3877		5
rs72630614	8:38213583	A/G	WHSC1L1	intron	0.993	1.05897	0.0126	5.225E-6		6
rs72630617	8:38231314	A/T	WHSC1L1	intron	0.992	1.05855	0.0126	6.191E-6		6
rs72630619	8:38233670	T/C	WHSC1L1	intron	0.646	1.06865	0.0541	0.2194		5
rs72630620	8:38234509	T/C	WHSC1L1	intron	0.995	0.94064	0.0128	1.7E-6		7
rs72644720	8:38134780	T/G	WHSC1L1	intron	0.994	0.94120	0.0128	2.158E-6		7
rs74302890	8:38178918	T/C	WHSC1L1	intron	0.822	1.01939	0.0168	0.2509		5
rs74716160	8:38190359	C/G	WHSC1L1	intron	0.828	1.02932	0.0413	0.4846		6
rs75379101	8:38228269	A/T	WHSC1L1	intron	0.816	0.97834	0.0349	0.5308		5
rs76806580	8:38148760	A/G	WHSC1L1	intron	0.776	0.95964	0.0455	0.3651		5
rs77184785	8:38178928	A/G	WHSC1L1	intron	0.732	1.02153	0.0338	0.5296		5
rs77367878	8:38213552	T/C	WHSC1L1	intron	0.839	1.02327	0.0362	0.5247		7
rs77561982	8:38156740	T/C	WHSC1L1	intron	0.856	0.97395	0.0293	0.3671		7
rs77732910	8:38147091	T/C	WHSC1L1	intron	0.684	1.08535	0.0295	0.005545		7
rs7823681	8:38142735	T/C	WHSC1L1	intron	0.989	1.05897	0.0126	5.4E-6		6
rs78997520	8:38141546	A/G	WHSC1L1	intron	0.742	0.97015	0.0505	0.5483		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information