VPS45

Basic Information

Gene Symbol	VPS45
Entrez Id	11311
Position	chr1:150039342..150117505
Description	vacuolar protein sorting 45 homolog (S. cerevisiae)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10494264	1:150093628	T/C	VPS45	intron	0.973	1.08709	0.0146	1.123E-8		2b
rs10749674	1:150077069	T/C	VPS45	intron	0.973	1.08600	0.0146	1.599E-8		7
rs10888572	1:150103589	T/C	VPS45	intron	0.906	1.08513	0.0146	2.128E-8		7
rs111397987	1:150074141	T/C	VPS45	intron	0.993	0.91503	0.0148	2.023E-9		7
rs111443519	1:150090738	A/G	VPS45	intron	0.994	0.91714	0.0148	4.702E-9		7
rs111465664	1:150050772	C/G	VPS45	intron	0.993	0.91539	0.0148	2.349E-9		7
rs112245786	1:150074642	A/G	VPS45	intron	0.993	1.09286	0.0148	2.008E-9		7
rs112287706	1:150046132	C/G	VPS45	intron	0.993	1.09243	0.0148	2.377E-9		7
rs112521467	1:150073298	A/G	VPS45	intron	0.993	0.91503	0.0148	2.033E-9		7
rs112814713	1:150074759	A/G	VPS45	intron	0.993	0.91503	0.0148	2.019E-9		7
rs113082139	1:150089914	T/C	VPS45	intron	0.956	0.91539	0.0148	2.29E-9		5
rs113316220	1:150074172	T/C	VPS45	intron	0.993	0.91503	0.0148	2.021E-9		7
rs113897387	1:150085959	A/G	VPS45	intron	0.993	0.91475	0.0148	1.755E-9		6
rs113961006	1:150109095	A/C	VPS45	intron	0.992	0.91448	0.0148	1.576E-9		6
rs114293536	1:150076497	A/C	VPS45	intron	0.762	1.02224	0.0582	0.7057		6
rs115226233	1:150076076	A/G	VPS45	intron	0.712	1.08242	0.0406	0.0509		6
rs115611531	1:150115623	C/G	VPS45	intron	0.713	0.91879	0.0404	0.03607		7
rs11577346	1:150066530	A/T	VPS45	intron	0.988	1.09341	0.0148	1.466E-9		6
rs115802109	1:150053389	T/C	VPS45	intron	0.734	0.96928	0.0291	0.2832		7
rs11580393	1:150077330	A/G	VPS45	intron	0.762	1.02224	0.0582	0.7054		6
rs11584091	1:150101169	T/C	VPS45	intron	0.993	0.91457	0.0148	1.639E-9		3a
rs116203299	1:150089307	A/C	VPS45	intron	0.994	0.91714	0.0147	4.372E-9		7
rs116256724	1:150054676	A/G	VPS45	intron	0.802	0.96445	0.0653	0.5795		5
rs116676131	1:150091867	T/C	VPS45	intron	0.839	0.94535	0.0678	0.407		6
rs116819476	1:150055361	T/C	VPS45	intron	0.610	0.98738	0.0393	0.7472		6
rs12032146	1:150089520	C/G	VPS45	intron	0.914	1.02316	0.0172	0.1818		7
rs12138231	1:150115398	A/T	VPS45	intron	0.949	1.08622	0.0144	8.846E-9		6
rs12139248	1:150108487	T/C	VPS45	intron	0.916	1.08774	0.0146	9.31E-9		6
rs12723224	1:150098436	A/G	VPS45	intron	0.625	1.04362	0.0189	0.02388		6
rs138588954	1:150090016	A/G	VPS45	intron	0.781	1.05127	0.0625	0.4243		-
rs139780328	1:150044673	A/G	VPS45	intron	0.874	1.00894	0.0200	0.6541		-
rs143419015	1:150105118	C/G	VPS45	intron	0.629	0.97356	0.0313	0.3926		-
rs186558333	1:150103587	A/G	VPS45	intron	0.808	0.95657	0.0650	0.4944		-
rs193018301	1:150101483	A/G	VPS45	intron	0.769	0.94677	0.0535	0.3061		-
rs1975957	1:150104269	C/G	VPS45	intron	0.973	0.92008	0.0146	1.184E-8		6
rs2027349	1:150039678	A/G	VPS45	intron,near-gene-5,untranslated-5	0.973	1.08567	0.0146	1.733E-8		2c
rs2039800	1:150095754	A/G	VPS45	intron	0.973	0.91952	0.0146	9.776E-9		6
rs2318763	1:150115974	A/G	VPS45	intron	0.990	1.08970	0.0148	5.839E-9		7
rs34334719	1:150058019	A/G	VPS45	intron	0.671	1.00260	0.0447	0.953		7
rs34447451	1:150089073	T/C	VPS45	intron	0.730	0.98955	0.0334	0.7542		7
rs3850838	1:150065378	A/T	VPS45	intron	0.972	0.92072	0.0146	1.593E-8		6
rs3925724	1:150080265	T/C	VPS45	intron	0.972	1.08719	0.0146	1.117E-8		6
rs4058847	1:150058727	T/C	VPS45	intron	0.972	1.08611	0.0146	1.563E-8		5
rs4926406	1:150046970	A/T	VPS45	intron	0.921	1.08264	0.0146	5.488E-8		6
rs4926407	1:150087824	T/G	VPS45	intron	0.973	0.91962	0.0146	9.941E-9		6
rs4926408	1:150106226	T/G	VPS45	intron	0.972	0.91971	0.0146	1.008E-8		6
rs4926409	1:150110435	A/T	VPS45	intron	0.924	1.08698	0.0145	8.367E-9		5
rs61805643	1:150060613	A/G	VPS45	intron	0.670	1.00351	0.0437	0.9364		6
rs61807307	1:150106651	A/T	VPS45	intron	0.867	1.02061	0.0270	0.4503		5
rs6657062	1:150107509	T/C	VPS45	intron	0.969	1.08893	0.0146	5.695E-9		7
rs6694729	1:150079777	C/G	VPS45	intron	0.971	0.92072	0.0146	1.555E-8		7
rs72692893	1:150047119	A/G	VPS45	intron	0.993	1.09243	0.0148	2.377E-9		7
rs72692895	1:150047856	C/G	VPS45	intron	0.994	1.08774	0.0147	1.095E-8		6
rs72692896	1:150048871	A/T	VPS45	intron	0.993	1.09068	0.0148	4.197E-9		6
rs72692897	1:150049934	A/G	VPS45	intron	0.994	1.08763	0.0147	1.109E-8		6
rs72692898	1:150049982	T/C	VPS45	intron	0.993	0.91539	0.0148	2.355E-9		6
rs72692899	1:150050058	A/G	VPS45	intron	0.993	0.91539	0.0148	2.352E-9		7
rs72692900	1:150050268	A/G	VPS45	intron	0.993	1.09243	0.0148	2.369E-9		7
rs72692901	1:150056510	A/T	VPS45	intron	0.994	0.91925	0.0147	1.061E-8		5
rs72692902	1:150058577	T/G	VPS45	intron	0.961	0.91925	0.0149	1.742E-8		6
rs72694905	1:150062644	A/C	VPS45	intron	0.989	0.91778	0.0148	6.393E-9		6
rs72694906	1:150065287	T/C	VPS45	intron	0.994	1.08806	0.0147	9.752E-9		6
rs72694908	1:150068071	A/C	VPS45	intron	0.994	1.08806	0.0147	9.492E-9		7
rs72694914	1:150074945	A/G	VPS45	intron	0.993	1.09286	0.0148	2.007E-9		5
rs72694915	1:150074988	A/G	VPS45	intron	0.993	0.91503	0.0148	2.015E-9		5
rs72694917	1:150076613	A/G	VPS45	intron	0.994	0.91851	0.0147	7.537E-9		6
rs72694918	1:150076663	A/G	VPS45	intron	0.994	1.08883	0.0147	7.465E-9		7
rs72694919	1:150076808	T/C	VPS45	intron	0.994	0.91842	0.0147	7.506E-9		6
rs72694923	1:150077266	A/G	VPS45	intron	0.993	1.09286	0.0148	1.981E-9		6
rs72694926	1:150080113	A/C	VPS45	intron	0.993	0.91475	0.0148	1.803E-9		7
rs72694927	1:150080659	A/C	VPS45	intron	0.994	1.08904	0.0147	7.034E-9		6
rs72694928	1:150081568	A/G	VPS45	intron	0.993	1.09319	0.0148	1.792E-9		7
rs72694933	1:150094532	T/C	VPS45	intron	0.993	0.91466	0.0148	1.722E-9		7
rs72694936	1:150098110	A/G	VPS45	intron	0.993	1.09330	0.0148	1.696E-9		7
rs72694942	1:150110480	A/G	VPS45	intron	0.986	0.91503	0.0148	1.977E-9		5
rs72694943	1:150111980	T/C	VPS45	intron	0.990	0.91475	0.0148	1.688E-9		7
rs72694944	1:150112476	T/C	VPS45	intron	0.992	0.91439	0.0148	1.575E-9		7
rs72694945	1:150113490	A/T	VPS45	intron	0.992	0.91439	0.0148	1.569E-9		7
rs72694946	1:150115486	T/G	VPS45	intron	0.982	1.09101	0.0148	3.825E-9		7
rs75215871	1:150062783	A/C	VPS45	intron	0.632	1.00050	0.0471	0.9908		7
rs75472288	1:150041892	T/C	VPS45	intron	0.879	1.01076	0.0198	0.5896		6
rs79011663	1:150098679	A/G	VPS45	intron	0.615	1.03510	0.0387	0.3723		7
rs79190103	1:150084724	T/C	VPS45	intron	0.616	0.97326	0.0365	0.4589		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information