TTL

Basic Information

Gene Symbol	TTL
Entrez Id	150465
Position	chr2:40921269..41055143
Description	tubulin tyrosine ligase
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10202834	2:113244669	T/C	TTL	intron	0.884	0.99511	0.0114	0.6687		5
rs111877846	2:113280815	C/G	TTL	intron	0.835	1.05792	0.0476	0.2368		5
rs112176668	2:113269604	T/C	TTL	intron	0.776	0.98669	0.0380	0.7251		6
rs113993274	2:113250021	A/G	TTL	intron	0.859	0.98383	0.0386	0.6727		6
rs115100139	2:113238346	A/G	TTL	near-gene-5	0.609	0.98669	0.0312	0.6686		4
rs115387474	2:113272908	A/G	TTL	intron	0.747	1.03334	0.0428	0.444		7
rs115410449	2:113258479	A/C	TTL	intron	0.763	1.02102	0.0210	0.3214		7
rs115564359	2:113274289	T/C	TTL	intron	0.845	1.02583	0.0466	0.5846		7
rs11692276	2:113261035	A/G	TTL	intron	0.976	0.97492	0.0130	0.05138		7
rs11891971	2:113240917	C/G	TTL	intron	0.977	1.01654	0.0172	0.3391		4
rs11899598	2:113259473	A/G	TTL	intron	0.986	0.99960	0.0109	0.9732		6
rs12464735	2:113269400	A/G	TTL	intron	0.951	1.00733	0.0232	0.7529		7
rs12464895	2:113278700	T/C	TTL	intron	0.788	0.98079	0.0272	0.4754		7
rs12465446	2:113275119	T/C	TTL	intron	0.990	1.00180	0.0109	0.8707		7
rs12469608	2:113270792	A/G	TTL	intron	0.952	0.99144	0.0232	0.7126		7
rs12614651	2:113252403	A/G	TTL	intron	0.975	1.03107	0.0139	0.02839		7
rs13024583	2:113260861	T/G	TTL	intron	0.973	0.97424	0.0130	0.04495		7
rs13030618	2:113277070	T/G	TTL	intron	0.993	0.99740	0.0109	0.8116		5
rs13424690	2:113239833	T/C	TTL	untranslated-5	0.819	1.00793	0.0171	0.6442		4
rs138933236	2:113275015	A/G	TTL	intron	0.883	0.98649	0.0476	0.7756		-
rs139220201	2:113283208	A/G	TTL	intron	0.997	0.96793	0.0150	0.0294		-
rs141061850	2:113277648	C/G	TTL	intron	0.946	1.00833	0.0231	0.72		-
rs141588567	2:113273380	T/C	TTL	intron	0.744	0.96165	0.0302	0.1948		-
rs143200986	2:113285076	T/G	TTL	intron	0.997	1.03376	0.0150	0.02667		-
rs143694550	2:113256871	A/T	TTL	intron	0.880	1.03314	0.0550	0.5538		-
rs1465817	2:113286492	A/T	TTL	untranslated-3	0.997	1.03365	0.0150	0.02712		6
rs146913486	2:113282799	T/G	TTL	intron	0.896	1.04540	0.0176	0.01145		-
rs148885078	2:113248232	T/C	TTL	intron	0.625	1.00813	0.0651	0.9006		-
rs150515970	2:113270234	A/G	TTL	intron	0.874	1.01694	0.0390	0.6673		-
rs1561266	2:113287964	A/G	TTL	untranslated-3	0.993	1.03707	0.0147	0.0132		7
rs17043158	2:113276716	A/G	TTL	intron	0.992	1.00270	0.0109	0.8039		5
rs17043167	2:113276899	T/C	TTL	intron	0.993	1.00260	0.0109	0.8118		1f
rs181976834	2:113253853	A/T	TTL	intron	0.901	1.03967	0.0569	0.4944		-
rs182817496	2:113271170	A/G	TTL	intron	0.760	0.90638	0.0486	0.04297		-
rs182827445	2:113261006	A/T	TTL	intron	0.617	1.05675	0.0364	0.1299		-
rs186513612	2:113253983	A/T	TTL	intron	0.900	0.96493	0.0569	0.5302		-
rs187528999	2:113239388	A/T	TTL	near-gene-5	0.941	1.03894	0.0551	0.4882		-
rs188176789	2:113281703	A/G	TTL	intron	0.617	1.04164	0.0503	0.4177		-
rs189634795	2:113257090	T/C	TTL	intron	0.766	0.92321	0.0630	0.2047		-
rs2028167	2:113250360	T/C	TTL	intron	0.969	0.96880	0.0139	0.02304		6
rs28542310	2:113271212	A/G	TTL	intron	0.990	0.99930	0.0109	0.9499		6
rs34047777	2:113248304	A/G	TTL	intron	0.998	0.96561	0.0148	0.01788		6
rs34082454	2:113278311	A/C	TTL	intron	0.990	0.99681	0.0109	0.7688		7
rs34179430	2:113259739	A/G	TTL	intron	0.973	0.97570	0.0131	0.05928		7
rs34325725	2:113255936	T/C	TTL	intron	0.740	1.06641	0.0417	0.1236		7
rs34892661	2:113246947	A/C	TTL	intron	0.998	0.96541	0.0148	0.01725		6
rs35419160	2:113277436	C/G	TTL	intron	0.991	0.99730	0.0109	0.8068		5
rs36086865	2:113248673	A/G	TTL	intron	0.998	0.96561	0.0148	0.01799		7
rs3811038	2:113240183	T/C	TTL	intron	0.992	0.97064	0.0120	0.01263		4
rs3849314	2:113272924	A/T	TTL	intron	0.991	0.99790	0.0109	0.844		7
rs3910512	2:113268668	T/C	TTL	intron	0.990	1.00200	0.0109	0.8565		7
rs3961919	2:113243321	A/G	TTL	intron	1.000	0.99890	0.0107	0.9219		1f
rs58956595	2:113247620	C/G	TTL	intron	0.973	1.02788	0.0140	0.05009		5
rs59920746	2:113248967	T/C	TTL	intron	0.974	1.03159	0.0139	0.02565		7
rs61733584	2:113251880	A/G	TTL	missense	0.771	0.92026	0.0631	0.1881		5
rs62157494	2:113247755	A/G	TTL	intron	0.973	0.96948	0.0140	0.0261		5
rs62157497	2:113250712	T/G	TTL	intron	0.942	1.00531	0.0233	0.8219		4
rs62157498	2:113250737	A/G	TTL	intron	0.941	0.99461	0.0233	0.8158		4
rs62157516	2:113258671	A/G	TTL	intron	0.751	0.99910	0.0145	0.9504		7
rs62157525	2:113270914	T/C	TTL	intron	0.979	0.96957	0.0139	0.02635		7
rs62157526	2:113273833	A/G	TTL	intron	0.980	1.03179	0.0139	0.0244		6
rs62157527	2:113275339	A/G	TTL	intron	0.983	1.00511	0.0109	0.6434		7
rs62157532	2:113276770	T/G	TTL	intron	0.980	0.96986	0.0139	0.02786		6
rs62157534	2:113277217	A/G	TTL	intron	0.978	0.97122	0.0138	0.03446		3a
rs62157536	2:113277497	T/C	TTL	intron	0.979	1.02347	0.0131	0.07677		5
rs62157537	2:113277505	T/C	TTL	intron	0.977	0.96802	0.0140	0.01985		5
rs62157538	2:113277949	T/C	TTL	coding-synon	0.979	1.03231	0.0139	0.02207		5
rs6542059	2:113253178	A/G	TTL	intron	0.990	0.99910	0.0109	0.9339		7
rs6542060	2:113253252	A/G	TTL	intron	0.988	0.99890	0.0109	0.9165		7
rs6542061	2:113269706	T/C	TTL	intron	0.989	0.99790	0.0109	0.8496		6
rs6707618	2:113243799	A/T	TTL	intron	0.989	1.03448	0.0148	0.02199		6
rs67178025	2:113286023	A/G	TTL	intron	0.997	0.96735	0.0150	0.02669		6
rs6718241	2:113271946	A/G	TTL	intron	0.987	1.00210	0.0109	0.845		6
rs71414672	2:113276539	A/C	TTL	intron	0.947	0.96590	0.0144	0.01622		3a
rs71414673	2:113285621	A/G	TTL	intron	0.997	1.03314	0.0150	0.02933		7
rs74406364	2:113268517	A/T	TTL	intron	0.601	0.96214	0.0467	0.4087		7
rs75210106	2:113246436	T/C	TTL	intron	0.955	0.96812	0.0140	0.02053		6
rs7576952	2:113270599	A/G	TTL	intron	0.951	0.99283	0.0232	0.7546		7
rs7589692	2:113284565	T/G	TTL	intron	0.606	0.91916	0.0360	0.01933		6
rs7589916	2:113284795	A/G	TTL	intron	0.798	0.94280	0.0566	0.2979		7
rs76898093	2:113252827	T/C	TTL	intron	0.902	1.03780	0.0569	0.5142		7
rs79071692	2:113282243	A/G	TTL	intron	0.997	0.96735	0.0150	0.02661		6
rs80256382	2:113255044	T/C	TTL	intron	0.977	0.96967	0.0139	0.02669		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information