TOM1L2

Basic Information

Gene Symbol	TOM1L2
Entrez Id	146691
Position	chr17:17746822..17875784
Description	target of myb1-like 2 (chicken)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10048206	17:17866897	A/G	TOM1L2	intron	0.996	0.94649	0.0110	5.201E-7		7
rs11078400	17:17757728	A/G	TOM1L2	intron	1.000	1.05359	0.0110	2.26E-6		4
rs11078401	17:17769452	A/G	TOM1L2	intron	0.890	1.04039	0.0431	0.3584		6
rs11078403	17:17803416	A/G	TOM1L2	intron	0.992	0.94838	0.0110	1.344E-6		7
rs11078404	17:17820487	A/T	TOM1L2	intron	0.996	0.94630	0.0110	4.737E-7		6
rs11078405	17:17824978	T/G	TOM1L2	intron	1.000	1.05929	0.0110	1.661E-7		2a
rs11078406	17:17840823	T/G	TOM1L2	intron	1.000	1.05548	0.0109	7.824E-7		5
rs11078407	17:17841083	T/C	TOM1L2	intron	1.000	0.94705	0.0109	6.474E-7		5
rs111650396	17:17749872	C/G	TOM1L2	untranslated-3	0.757	0.94866	0.0378	0.1632		5
rs112525639	17:17813410	T/C	TOM1L2	intron,near-gene-5	0.764	0.94318	0.0374	0.1175		7
rs113046680	17:17820794	T/C	TOM1L2	intron	0.746	1.00180	0.0400	0.9632		6
rs113763559	17:17860003	A/G	TOM1L2	intron	0.655	1.00854	0.0330	0.7979		6
rs117296440	17:17751390	C/G	TOM1L2	intron	0.686	0.98610	0.0617	0.8203		5
rs117327272	17:17788602	T/C	TOM1L2	intron	0.990	0.97795	0.0407	0.5842		4
rs117544762	17:17856336	T/C	TOM1L2	intron	0.794	0.95772	0.0479	0.3664		5
rs117815291	17:17863840	T/C	TOM1L2	intron	0.939	1.02922	0.0297	0.3318		7
rs117861021	17:17814417	T/C	TOM1L2	intron	0.916	0.93988	0.0371	0.09444		4
rs117890270	17:17870778	A/G	TOM1L2	intron	0.970	1.00150	0.0285	0.958		5
rs117898889	17:17833685	A/G	TOM1L2	intron	0.750	1.05834	0.0493	0.2499		7
rs117924262	17:17757520	C/G	TOM1L2	intron	0.900	1.00511	0.0396	0.8973		4
rs117924544	17:17860100	T/C	TOM1L2	intron	0.954	1.05253	0.0164	0.001812		6
rs11869536	17:17826528	A/T	TOM1L2	intron	1.000	1.05591	0.0109	6.34E-7		4
rs11871899	17:17826748	C/G	TOM1L2	intron	1.000	0.94412	0.0110	1.663E-7		6
rs12452219	17:17829423	T/C	TOM1L2	intron	0.999	1.06014	0.0110	1.208E-7		7
rs12452254	17:17829434	A/G	TOM1L2	intron	1.000	1.05908	0.0110	1.763E-7		7
rs12453825	17:17819635	T/C	TOM1L2	intron	0.956	1.04571	0.0114	0.00009395		7
rs12600546	17:17867614	A/G	TOM1L2	intron	0.994	0.94724	0.0110	7.794E-7		5
rs12602500	17:17869517	T/C	TOM1L2	intron	0.923	1.03728	0.0373	0.3258		6
rs12603148	17:17865257	T/C	TOM1L2	intron	0.996	1.05696	0.0110	4.261E-7		6
rs12936037	17:17777245	A/G	TOM1L2	intron	1.000	1.05844	0.0111	3.144E-7		4
rs12940832	17:17853900	T/C	TOM1L2	intron	0.797	1.01471	0.0215	0.4954		5
rs12941039	17:17765655	T/C	TOM1L2	intron,near-gene-5	1.000	0.94497	0.0111	3.412E-7		4
rs12941550	17:17753828	A/C	TOM1L2	intron	0.917	0.94810	0.0113	2.532E-6		2b
rs12943500	17:17790588	T/C	TOM1L2	intron	0.999	0.94554	0.0109	2.501E-7		5
rs12951376	17:17752809	T/C	TOM1L2	intron	0.991	1.04467	0.0114	0.0001207		1b
rs138120331	17:17781227	A/C	TOM1L2	intron	0.679	0.98590	0.0452	0.754		-
rs138628526	17:17871870	T/C	TOM1L2	intron	0.863	0.95218	0.0424	0.2477		-
rs141353505	17:17774602	A/G	TOM1L2	intron	0.835	1.14591	0.0560	0.01507		-
rs141610547	17:17754670	A/G	TOM1L2	intron	0.683	1.00030	0.0454	0.9949		-
rs142050683	17:17850095	A/G	TOM1L2	intron	0.831	1.07144	0.0410	0.09253		-
rs143309642	17:17871596	A/G	TOM1L2	intron	0.828	1.07724	0.0454	0.1011		-
rs147747231	17:17752639	A/C	TOM1L2	intron	0.726	1.12772	0.0632	0.05737		-
rs148099819	17:17776504	A/G	TOM1L2	intron	0.819	0.93941	0.0451	0.1656		-
rs148500340	17:17847648	T/C	TOM1L2	intron	0.825	0.92951	0.0461	0.1132		-
rs149193716	17:17828532	T/C	TOM1L2	intron	0.611	0.86140	0.0671	0.0262		-
rs149829211	17:17832390	A/G	TOM1L2	intron	0.747	0.96387	0.0547	0.5018		-
rs150281431	17:17824779	A/C	TOM1L2	intron	0.757	1.01715	0.0509	0.7378		-
rs16960744	17:17755259	A/G	TOM1L2	intron	0.998	1.05359	0.0111	2.504E-6		6
rs184884476	17:17815988	T/C	TOM1L2	intron	0.689	1.09264	0.0464	0.05621		-
rs185377366	17:17767628	T/C	TOM1L2	intron	0.797	0.94866	0.0467	0.2588		-
rs189792214	17:17816119	A/C	TOM1L2	intron	0.615	1.03448	0.0368	0.3558		-
rs190725344	17:17830695	T/C	TOM1L2	intron	0.832	1.06673	0.0410	0.1152		-
rs2236513	17:17747366	A/C	TOM1L2	untranslated-3	0.998	1.05633	0.0111	8.493E-7		5
rs2350977	17:17802779	T/C	TOM1L2	intron	1.000	0.94630	0.0109	4.529E-7		6
rs28428991	17:17827649	T/C	TOM1L2	intron	1.000	1.05591	0.0109	6.468E-7		5
rs3183702	17:17747289	A/G	TOM1L2	untranslated-3	0.998	1.05717	0.0111	6.12E-7		5
rs34434158	17:17869391	T/C	TOM1L2	intron	0.969	1.00501	0.0283	0.8586		6
rs35451946	17:17764061	C/G	TOM1L2	intron,ncRNA	1.000	1.05369	0.0110	2.123E-6		2b
rs35985348	17:17814827	A/G	TOM1L2	intron	0.854	0.98236	0.0262	0.4972		4
rs4077198	17:17834563	T/C	TOM1L2	intron	1.000	0.94705	0.0109	6.29E-7		7
rs4077828	17:17833644	A/T	TOM1L2	intron	1.000	0.94705	0.0109	6.43E-7		7
rs4244602	17:17841456	A/G	TOM1L2	intron	1.000	0.94431	0.0110	1.881E-7		5
rs4257260	17:17857003	A/G	TOM1L2	intron	0.996	0.94686	0.0110	6.151E-7		7
rs4341796	17:17839024	A/C	TOM1L2	intron	1.000	1.05908	0.0110	1.819E-7		2a
rs4343339	17:17872589	T/C	TOM1L2	intron	0.988	0.94488	0.0110	2.477E-7		5
rs4413022	17:17858280	C/G	TOM1L2	intron	0.996	1.05665	0.0110	4.864E-7		7
rs4414547	17:17859052	T/G	TOM1L2	intron	0.986	1.05665	0.0110	5.504E-7		7
rs4458058	17:17813322	A/G	TOM1L2	intron,near-gene-5	0.607	0.99432	0.0434	0.8963		7
rs4470201	17:17844870	A/G	TOM1L2	intron	1.000	1.05580	0.0109	6.626E-7		7
rs4534911	17:17852330	A/G	TOM1L2	intron	0.999	0.94469	0.0110	2.336E-7		7
rs4553680	17:17857722	A/G	TOM1L2	intron	0.999	0.94441	0.0110	2.056E-7		6
rs4616340	17:17861360	T/C	TOM1L2	intron	0.996	0.94630	0.0110	4.616E-7		5
rs4924822	17:17748013	A/G	TOM1L2	untranslated-3	0.993	1.05792	0.0112	4.474E-7		4
rs4924823	17:17764502	A/G	TOM1L2	intron,near-gene-5	1.000	1.05327	0.0110	2.59E-6		4
rs4924826	17:17798046	A/C	TOM1L2	intron	0.729	1.00995	0.0287	0.7292		7
rs4925120	17:17754633	T/C	TOM1L2	intron	0.995	0.94885	0.0111	2.154E-6		5
rs4925123	17:17784374	T/C	TOM1L2	intron	1.000	1.05919	0.0110	1.688E-7		1f
rs4925125	17:17794444	T/C	TOM1L2	intron	1.000	1.05485	0.0109	1.028E-6		4
rs4925126	17:17798633	A/G	TOM1L2	intron	1.000	1.05580	0.0109	6.792E-7		6
rs4925129	17:17807186	A/G	TOM1L2	intron	1.000	0.94478	0.0110	2.456E-7		7
rs4925130	17:17807858	A/G	TOM1L2	intron	0.999	1.06184	0.0110	5.327E-8		7
rs5002487	17:17832460	A/G	TOM1L2	intron	1.000	0.94422	0.0110	1.75E-7		1f
rs60073596	17:17870974	T/G	TOM1L2	intron	0.973	1.04488	0.0113	0.00009516		7
rs60743050	17:17801745	A/T	TOM1L2	intron	0.965	0.99432	0.0284	0.841		5
rs61217632	17:17775706	T/C	TOM1L2	intron	0.842	1.02480	0.0203	0.2257		6
rs62064156	17:17822480	T/C	TOM1L2	intron	1.000	1.05908	0.0110	1.75E-7		4
rs62064158	17:17826935	T/C	TOM1L2	intron	1.000	0.94829	0.0109	1.224E-6		5
rs62072047	17:17872537	A/C	TOM1L2	intron	0.833	0.91101	0.0411	0.02331		7
rs6502619	17:17779704	C/G	TOM1L2	intron	1.000	1.05919	0.0110	1.713E-7		5
rs6502622	17:17834691	A/G	TOM1L2	intron	1.000	0.94696	0.0109	6.063E-7		7
rs6502624	17:17847936	A/G	TOM1L2	intron	0.999	1.05654	0.0109	4.937E-7		5
rs6502625	17:17848286	C/G	TOM1L2	intron	0.991	1.05739	0.0110	3.686E-7		5
rs6502626	17:17849450	T/C	TOM1L2	intron	0.997	1.05654	0.0110	5.074E-7		7
rs6502627	17:17849671	T/C	TOM1L2	intron	0.997	1.05633	0.0110	5.597E-7		5
rs6502629	17:17869642	A/G	TOM1L2	intron	0.997	0.94630	0.0109	3.939E-7		6
rs66531105	17:17809001	T/C	TOM1L2	intron	1.000	1.05570	0.0109	6.878E-7		7
rs67253360	17:17828973	T/C	TOM1L2	intron	1.000	0.94715	0.0109	6.677E-7		7
rs71367425	17:17829403	A/T	TOM1L2	intron	0.862	0.98551	0.0266	0.5816		7
rs7207395	17:17819335	T/C	TOM1L2	intron	1.000	1.05929	0.0110	1.59E-7		7
rs7213225	17:17869111	T/C	TOM1L2	intron	0.996	0.94620	0.0110	4.53E-7		7
rs74506959	17:17797474	A/C	TOM1L2	intron	0.607	0.97356	0.0543	0.6211		7
rs74528549	17:17785769	A/G	TOM1L2	intron	0.638	1.00854	0.0244	0.7292		4
rs74582416	17:17831603	A/T	TOM1L2	intron	0.873	0.95075	0.0334	0.1301		7
rs75406820	17:17788614	A/T	TOM1L2	intron	0.990	0.97795	0.0407	0.5842		4
rs75865442	17:17797530	A/G	TOM1L2	intron	0.607	0.97356	0.0543	0.6211		5
rs76099088	17:17806597	T/G	TOM1L2	intron	0.966	1.00030	0.0286	0.9926		6
rs76595964	17:17837410	A/G	TOM1L2	intron	0.656	0.97707	0.0325	0.4752		4
rs76722346	17:17802426	T/C	TOM1L2	intron	0.918	1.07810	0.0302	0.01276		5
rs76852760	17:17771415	A/T	TOM1L2	intron	0.906	0.96618	0.0368	0.3495		6
rs77431985	17:17754926	A/G	TOM1L2	intron	0.900	1.00501	0.0396	0.9		5
rs77574734	17:17786980	A/G	TOM1L2	intron	0.908	1.03894	0.0367	0.2974		7
rs77735858	17:17866190	A/G	TOM1L2	intron	0.895	1.03293	0.0367	0.377		7
rs77821901	17:17799613	A/G	TOM1L2	intron	0.966	0.99810	0.0282	0.9465		6
rs79380527	17:17844818	T/C	TOM1L2	intron	0.967	1.00521	0.0284	0.8547		7
rs79572919	17:17785752	T/C	TOM1L2	intron	0.908	1.03904	0.0367	0.2968		4
rs79619630	17:17787081	T/C	TOM1L2	intron	0.653	1.05138	0.0506	0.3216		7
rs79665189	17:17800090	A/G	TOM1L2	intron	0.623	1.02840	0.0441	0.5258		5
rs79743842	17:17756872	T/C	TOM1L2	intron	0.699	1.06226	0.0538	0.2615		5
rs80347931	17:17829844	T/C	TOM1L2	intron	0.788	1.11193	0.0382	0.005444		7
rs8065416	17:17851162	T/C	TOM1L2	intron	0.993	1.05432	0.0110	1.452E-6		6
rs8065497	17:17782649	A/G	TOM1L2	intron	0.998	1.05802	0.0109	2.172E-7		7
rs8065563	17:17782404	A/G	TOM1L2	intron	1.000	0.94393	0.0110	1.572E-7		6
rs8065970	17:17858771	A/G	TOM1L2	intron	0.996	0.94649	0.0110	5.082E-7		7
rs8066145	17:17806914	A/G	TOM1L2	intron	0.886	1.05844	0.0118	1.597E-6		7
rs8066982	17:17851377	T/C	TOM1L2	intron	0.997	0.94658	0.0110	5.399E-7		4
rs8067044	17:17806945	T/C	TOM1L2	intron	0.841	0.95104	0.0117	0.00001749		6
rs8068281	17:17816158	T/G	TOM1L2	intron	0.675	0.94488	0.0184	0.002039		4
rs8068820	17:17834119	A/G	TOM1L2	intron	0.999	0.94933	0.0110	2.164E-6		6
rs8070128	17:17804725	T/C	TOM1L2	intron	1.000	0.94422	0.0110	1.8E-7		3a
rs8070624	17:17843396	A/G	TOM1L2	intron	0.986	1.05887	0.0110	1.742E-7		7
rs8070722	17:17813562	T/C	TOM1L2	intron,near-gene-5	1.000	1.05570	0.0109	7.214E-7		5
rs8070748	17:17859421	A/G	TOM1L2	intron	0.996	0.94658	0.0110	5.422E-7		4
rs8073001	17:17831716	T/G	TOM1L2	intron	1.000	1.05591	0.0109	6.458E-7		6
rs8075965	17:17853180	A/T	TOM1L2	intron	0.976	0.94677	0.0111	8.402E-7		6
rs8076747	17:17853595	T/C	TOM1L2	intron	0.988	1.05897	0.0110	1.734E-7		7
rs8077338	17:17860546	T/C	TOM1L2	intron	0.994	0.94469	0.0109	1.765E-7		7
rs8077530	17:17853454	T/C	TOM1L2	intron	0.977	0.94563	0.0111	4.903E-7		6
rs8078105	17:17853782	T/C	TOM1L2	intron	0.981	0.94734	0.0110	9.299E-7		5
rs8078138	17:17811251	T/C	TOM1L2	intron	1.000	1.05887	0.0110	2.025E-7		7
rs8078583	17:17811465	T/C	TOM1L2	intron	1.000	1.05897	0.0110	1.88E-7		7
rs8079321	17:17760789	T/C	TOM1L2	intron	1.000	1.05348	0.0110	2.336E-6		5
rs8080061	17:17776389	T/C	TOM1L2	intron	1.000	0.94819	0.0110	1.434E-6		5
rs8080823	17:17864048	T/C	TOM1L2	intron	0.999	0.94450	0.0110	2.215E-7		4
rs8081654	17:17806783	T/C	TOM1L2	intron	0.613	1.02706	0.0248	0.2821		6
rs950966	17:17783748	A/G	TOM1L2	intron	1.000	1.05887	0.0110	1.95E-7		5
rs9635697	17:17870394	A/T	TOM1L2	intron	0.996	1.05665	0.0110	4.898E-7		5
rs9635698	17:17871884	T/C	TOM1L2	intron	0.983	1.05739	0.0110	4.05E-7		7
rs9890341	17:17823175	C/G	TOM1L2	intron	1.000	1.05591	0.0109	6.273E-7		5
rs9892963	17:17848602	A/T	TOM1L2	intron	0.799	0.95734	0.0133	0.001012		7
rs9893690	17:17753846	A/T	TOM1L2	intron	0.986	1.05464	0.0111	1.735E-6		3a
rs9895335	17:17767767	A/G	TOM1L2	intron	0.980	1.05390	0.0111	2.105E-6		7
rs9895750	17:17767819	T/C	TOM1L2	intron	1.000	0.94459	0.0111	2.883E-7		7
rs9904163	17:17830553	T/C	TOM1L2	intron	1.000	1.05570	0.0109	6.885E-7		5
rs9905284	17:17865752	A/G	TOM1L2	intron	0.996	1.05622	0.0110	6.072E-7		7
rs9907246	17:17770965	T/C	TOM1L2	intron	1.000	1.05781	0.0111	4.058E-7		7
rs9907287	17:17774118	T/C	TOM1L2	intron	1.000	0.94819	0.0110	1.41E-6		5
rs9908017	17:17774422	T/C	TOM1L2	intron	1.000	0.94819	0.0110	1.419E-6		7
rs9908299	17:17774568	T/C	TOM1L2	intron	1.000	0.94488	0.0111	3.24E-7		6
rs9908832	17:17871068	T/C	TOM1L2	intron	0.984	1.05876	0.0110	2.252E-7		6
rs9912895	17:17826020	A/G	TOM1L2	intron	1.000	0.94667	0.0109	5.348E-7		1f
rs9913724	17:17819101	A/G	TOM1L2	intron	0.998	0.94592	0.0110	3.944E-7		6
rs9915248	17:17747514	T/C	TOM1L2	untranslated-3	0.996	0.94715	0.0112	1.101E-6		5
rs9915776	17:17749056	A/G	TOM1L2	untranslated-3	0.997	1.05728	0.0111	5.837E-7		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information