TNF

Basic Information

Gene Symbol	TNF
Entrez Id	7124
Position	chr6:3052966..3055728
Description	tumor necrosis factor
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1800610	6:31543827	A/G	TNF	intron	0.952	1.01390	0.0185	0.4541		5
rs1800629	6:31543031	A/G	TNF	near-gene-5	0.983	0.91293	0.0147	5.566E-10		1f
rs3093661	6:31543758	A/G	TNF	intron	0.973	1.02347	0.0285	0.4151		4
rs3093662	6:31544189	A/G	TNF	intron	0.985	1.00874	0.0214	0.683		4
rs3093664	6:31544642	A/G	TNF	intron	0.970	0.99990	0.0202	0.995		4
rs3093665	6:31545391	A/C	TNF	untranslated-3	0.995	1.06930	0.0384	0.08121		7
rs3093668	6:31546495	C/G	TNF	near-gene-3	0.972	1.02092	0.0287	0.4709		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information