TCF20

Basic Information

Gene Symbol	TCF20
Entrez Id	6942
Position	chr22:65900..121331
Description	transcription factor 20 (AR1)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1033459	22:42619067	A/G	TCF20	intron	0.999	1.01319	0.0131	0.3163		7
rs1033460	22:42619308	A/G	TCF20	intron	1.000	1.01248	0.0130	0.3419		7
rs111404889	22:42638205	T/C	TCF20	intron	0.984	0.98728	0.0133	0.3351		6
rs111957468	22:42651567	A/G	TCF20	intron	0.744	0.96262	0.0505	0.4505		7
rs112991199	22:42569124	C/G	TCF20	intron	0.880	1.03510	0.0224	0.1245		5
rs113036988	22:42589464	A/C	TCF20	intron	0.864	0.99730	0.0426	0.9496		5
rs113631412	22:42642047	A/G	TCF20	intron	0.828	0.87853	0.0501	0.009739		7
rs116858138	22:42571637	C/G	TCF20	intron	0.681	0.94441	0.0504	0.2561		7
rs116867592	22:42627290	A/G	TCF20	intron	0.959	1.07229	0.0235	0.002951		7
rs116943841	22:42611788	A/C	TCF20	intron,near-gene-5	0.818	1.06684	0.0416	0.1198		6
rs117484537	22:42622781	T/C	TCF20	intron	0.914	1.02829	0.0521	0.593		7
rs117518412	22:42637023	A/G	TCF20	intron	0.839	1.02214	0.0282	0.4365		7
rs117542216	22:42594243	C/G	TCF20	intron	0.686	0.95371	0.0501	0.345		6
rs117750154	22:42663751	A/G	TCF20	intron	0.935	1.05338	0.0556	0.3493		7
rs117878768	22:42618662	T/C	TCF20	intron	0.958	0.93221	0.0234	0.002758		5
rs117965774	22:42593624	A/G	TCF20	intron	0.789	1.03884	0.0410	0.3529		6
rs118002301	22:42612360	T/C	TCF20	intron,near-gene-5	0.780	1.03852	0.0352	0.2831		4
rs118040307	22:42616172	T/C	TCF20	intron,near-gene-5	0.914	1.02809	0.0521	0.595		6
rs12165846	22:42649298	T/C	TCF20	intron	0.905	1.04655	0.0232	0.05028		6
rs12484402	22:42586073	T/C	TCF20	intron	0.998	0.96609	0.0120	0.003947		5
rs13056975	22:42650854	C/G	TCF20	intron	0.823	0.92238	0.0275	0.003363		6
rs134868	22:42651967	A/G	TCF20	intron	1.000	1.03314	0.0119	0.00633		6
rs134869	22:42652074	A/G	TCF20	intron	0.999	1.06078	0.0106	2.644E-8		7
rs134870	22:42652317	T/C	TCF20	intron	1.000	0.96783	0.0106	0.001947		5
rs134875	22:42661935	A/C	TCF20	intron	0.775	0.96127	0.0301	0.1905		6
rs134877	22:42662371	T/C	TCF20	intron	0.997	1.06311	0.0106	8.338E-9		7
rs137992872	22:42642843	A/G	TCF20	intron	0.930	0.99312	0.0232	0.765		-
rs138687708	22:42635459	A/G	TCF20	intron	0.793	0.97083	0.0371	0.4249		-
rs138926378	22:42650013	T/C	TCF20	intron	0.925	1.04289	0.0513	0.4127		-
rs138982580	22:42654047	T/C	TCF20	intron	0.720	1.00934	0.0481	0.8469		-
rs139000896	22:42590761	T/C	TCF20	intron	0.649	0.99263	0.0561	0.8955		-
rs139398603	22:42595192	A/G	TCF20	intron	0.789	0.95676	0.0495	0.3715		-
rs142871472	22:42610793	A/G	TCF20	coding-synon	0.745	1.03066	0.0519	0.56		-
rs143525991	22:42611265	C/G	TCF20	missense	0.914	0.97278	0.0521	0.5961		-
rs143879709	22:42632589	T/C	TCF20	intron	0.793	0.97103	0.0371	0.4283		-
rs144054744	22:42556656	A/C	TCF20	untranslated-3	0.820	0.97971	0.0490	0.6764		-
rs144242396	22:42621228	T/C	TCF20	intron	0.800	1.11416	0.0298	0.0002851		-
rs144478622	22:42578659	A/G	TCF20	intron	0.732	1.03686	0.0610	0.5527		-
rs144975479	22:42602658	A/G	TCF20	intron	0.728	0.94990	0.0573	0.3694		-
rs145566136	22:42618350	T/C	TCF20	intron	0.976	0.94990	0.0366	0.161		-
rs145996226	22:42569527	T/C	TCF20	intron	0.769	1.04509	0.0607	0.4677		-
rs146453058	22:42652937	A/G	TCF20	intron	0.919	0.95390	0.0550	0.3909		-
rs146668082	22:42591943	A/G	TCF20	intron	0.797	0.97035	0.0487	0.5369		-
rs146771028	22:42558056	A/G	TCF20	intron	0.729	0.96156	0.0400	0.3272		-
rs147135783	22:42571439	T/C	TCF20	intron	0.797	1.02963	0.0486	0.5481		-
rs147924505	22:42600855	A/G	TCF20	intron	0.646	0.98787	0.0557	0.827		-
rs148341813	22:42586914	T/C	TCF20	intron	0.928	0.96098	0.0358	0.2661		-
rs148704559	22:42621232	T/C	TCF20	intron	0.725	0.98089	0.0436	0.6585		-
rs149010974	22:42601571	T/G	TCF20	intron	0.793	0.96783	0.0482	0.497		-
rs150398197	22:42638140	T/C	TCF20	intron	0.977	0.91888	0.0206	0.00004028		-
rs150408344	22:42598307	A/G	TCF20	intron	0.826	0.90620	0.0504	0.05063		-
rs150891729	22:42586930	A/G	TCF20	intron	0.715	1.00321	0.0475	0.9457		-
rs151030711	22:42618034	A/G	TCF20	intron	0.774	0.90493	0.0648	0.1227		-
rs151300565	22:42634981	A/G	TCF20	intron	0.624	1.00180	0.0363	0.9607		-
rs16986035	22:42602139	T/C	TCF20	intron	0.977	0.97074	0.0120	0.01302		6
rs17002868	22:42584466	C/G	TCF20	intron	0.996	1.03025	0.0121	0.01327		7
rs17002872	22:42597836	C/G	TCF20	intron	0.986	0.96696	0.0121	0.005474		6
rs17002876	22:42599647	C/G	TCF20	intron	0.987	1.05876	0.0111	2.729E-7		6
rs17002897	22:42615054	C/G	TCF20	intron,near-gene-5	0.994	0.96831	0.0119	0.006953		7
rs17002902	22:42625509	C/G	TCF20	intron	1.000	1.01238	0.0130	0.3465		5
rs17386314	22:42612296	T/C	TCF20	intron,near-gene-5	0.766	1.00210	0.0312	0.9472		5
rs17386770	22:42630745	T/C	TCF20	intron	0.867	0.92719	0.0265	0.004316		7
rs17476888	22:42584612	A/C	TCF20	intron	0.848	0.93847	0.0257	0.0134		7
rs17478227	22:42654327	C/G	TCF20	intron	0.991	1.01227	0.0141	0.3872		1f
rs17478318	22:42658821	T/C	TCF20	intron	0.893	0.99860	0.0250	0.9542		7
rs183004220	22:42579868	T/G	TCF20	intron	0.867	0.97941	0.0416	0.617		-
rs184069792	22:42560720	T/C	TCF20	intron	0.684	0.95399	0.0567	0.406		-
rs184660836	22:42646273	T/G	TCF20	intron	0.731	1.07562	0.0537	0.1742		-
rs185649718	22:42650034	A/T	TCF20	intron	0.759	1.09417	0.0609	0.1392		-
rs185764039	22:42635553	A/G	TCF20	intron	0.793	0.90032	0.0659	0.1112		-
rs188160285	22:42570937	A/C	TCF20	intron	0.627	0.96880	0.0721	0.6599		-
rs188932318	22:42622937	T/C	TCF20	intron	0.706	0.89128	0.0681	0.091		-
rs189892230	22:42635632	A/G	TCF20	intron	0.748	0.96957	0.0520	0.5525		-
rs190443391	22:42621590	A/G	TCF20	intron	0.828	1.02398	0.0276	0.3909		-
rs191265815	22:42634980	T/C	TCF20	intron	0.623	0.99830	0.0364	0.963		-
rs192384471	22:42642267	T/C	TCF20	intron	0.631	0.84030	0.0761	0.02213		-
rs1989375	22:42573139	C/G	TCF20	intron	0.998	1.00572	0.0127	0.6536		7
rs2070116	22:42606257	T/C	TCF20	coding-synon	0.977	0.96060	0.0126	0.001411		6
rs2142695	22:42581248	T/C	TCF20	intron	0.914	1.01552	0.0230	0.5027		5
rs2143138	22:42618340	T/C	TCF20	intron	0.996	0.96725	0.0106	0.001642		4
rs2143139	22:42614401	C/G	TCF20	intron	0.992	1.05866	0.0111	2.946E-7		6
rs2223273	22:42599446	T/C	TCF20	intron	0.958	0.95810	0.0277	0.1225		6
rs2413684	22:42574830	T/C	TCF20	intron	0.979	1.05929	0.0108	8.785E-8		7
rs2839707	22:42643900	A/T	TCF20	intron	0.635	1.10517	0.0596	0.09349		5
rs28407360	22:42570595	T/C	TCF20	intron	0.796	0.86866	0.0412	0.0006298		6
rs28438468	22:42580975	A/G	TCF20	intron	0.931	1.02881	0.0345	0.4095		4
rs28582339	22:42629354	A/G	TCF20	intron	0.931	1.02439	0.0344	0.4834		2b
rs28805093	22:42639227	A/G	TCF20	intron	1.000	0.96735	0.0119	0.005446		6
rs28854583	22:42627122	T/C	TCF20	intron	0.993	0.96609	0.0120	0.00393		7
rs2899355	22:42579520	T/C	TCF20	intron	0.985	0.94582	0.0107	2.05E-7		4
rs34030679	22:42610099	T/C	TCF20	missense	0.993	1.09232	0.0198	8.283E-6		5
rs34107327	22:42648353	T/G	TCF20	intron	1.000	1.01177	0.0130	0.3686		6
rs34427781	22:42563525	I2/D	TCF20	intron	0.993	0.99980	0.0129	0.9887		-
rs34614590	22:42563532	T/G	TCF20	intron	0.988	1.00080	0.0130	0.9497		7
rs34979382	22:42614823	D/I4	TCF20	intron	0.993	1.01491	0.0130	0.2541		-
rs35234745	22:42580982	T/C	TCF20	intron	0.848	0.93838	0.0257	0.01325		4
rs35516504	22:42569247	I2/D	TCF20	intron	0.991	1.00070	0.0127	0.9531		-
rs4349441	22:42584389	T/C	TCF20	intron	0.927	0.99661	0.0233	0.8842		7
rs4453786	22:42563308	T/C	TCF20	intron	0.998	0.99840	0.0128	0.9016		1f
rs4464374	22:42584395	A/G	TCF20	intron	0.927	0.99661	0.0233	0.8842		7
rs4822099	22:42659964	A/G	TCF20	intron	0.842	1.02132	0.0281	0.4529		7
rs58197149	22:42574454	I2/D	TCF20	intron	0.986	1.09308	0.0199	7.518E-6		-
rs58654759	22:42642576	T/C	TCF20	intron	1.000	1.01157	0.0130	0.376		7
rs62240864	22:42563889	T/C	TCF20	intron	0.993	0.98797	0.0140	0.3891		7
rs62240933	22:42617456	T/C	TCF20	intron	0.925	1.00481	0.0233	0.8365		6
rs73167200	22:42566417	A/G	TCF20	intron	0.986	0.91613	0.0199	0.00001082		5
rs73169115	22:42583871	T/C	TCF20	intron	0.786	0.85907	0.0442	0.0005883		5
rs73169118	22:42598538	T/C	TCF20	intron	0.983	1.08047	0.0201	0.0001142		7
rs73169123	22:42611834	C/G	TCF20	intron,near-gene-5	0.993	0.91604	0.0198	9.791E-6		7
rs73169135	22:42656681	A/G	TCF20	intron	0.983	0.92155	0.0206	0.00007579		7
rs74539107	22:42632747	T/G	TCF20	intron	0.915	1.02337	0.0318	0.4681		7
rs75628172	22:42640518	A/G	TCF20	intron	0.978	1.05327	0.0366	0.157		7
rs75971674	22:42595926	A/G	TCF20	intron	0.922	0.94696	0.0258	0.03492		6
rs75993207	22:42578609	A/G	TCF20	intron	0.813	0.96735	0.0229	0.1466		5
rs77134147	22:42641535	T/C	TCF20	intron	0.669	0.91897	0.0466	0.06986		7
rs78179954	22:42649443	A/G	TCF20	intron	0.854	0.97113	0.0232	0.2073		6
rs78356795	22:42609845	A/G	TCF20	coding-synon	0.989	1.14488	0.0519	0.009088		6
rs78463060	22:42631773	T/C	TCF20	intron	0.953	0.93295	0.0234	0.003043		7
rs78555069	22:42615492	T/G	TCF20	intron,near-gene-5	0.962	0.95047	0.0366	0.1654		6
rs78630558	22:42580158	A/G	TCF20	intron	0.909	0.93025	0.0246	0.003301		6
rs78870601	22:42630772	T/C	TCF20	intron	0.961	0.93351	0.0235	0.003441		6
rs79724799	22:42559051	A/G	TCF20	intron	0.917	0.92747	0.0239	0.001654		5
rs79812456	22:42632556	T/C	TCF20	intron	0.916	0.94705	0.0259	0.03569		3a
rs79829846	22:42653852	C/G	TCF20	intron	0.846	1.07015	0.0374	0.06994		5
rs8137968	22:42635326	T/C	TCF20	intron	0.867	0.95820	0.0221	0.05357		6
rs8141134	22:42584071	A/G	TCF20	intron	0.988	0.97054	0.0121	0.01343		6
rs8142673	22:42596253	A/C	TCF20	intron	0.910	0.99124	0.0244	0.718		6
rs9306356	22:42567090	T/C	TCF20	intron	0.983	1.09319	0.0198	6.922E-6		5
rs932376	22:42614362	T/C	TCF20	intron	1.000	1.04227	0.0117	0.0003895		6
rs9607882	22:42567451	A/G	TCF20	intron	0.997	1.00110	0.0128	0.9325		6
rs9607885	22:42578596	T/C	TCF20	intron	0.998	1.00120	0.0128	0.9249		1f
rs9611746	22:42561365	A/G	TCF20	intron	0.990	1.00562	0.0127	0.6611		5
rs9611749	22:42570897	A/C	TCF20	intron	0.804	1.14236	0.0336	0.00007561		7
rs9611755	22:42596641	T/C	TCF20	intron	0.958	0.96339	0.0270	0.1674		7
rs9623534	22:42565200	A/G	TCF20	intron	0.986	0.91613	0.0199	0.00001035		2b
rs9623538	22:42597378	T/G	TCF20	intron	0.906	1.03998	0.0232	0.0903		7
rs9623543	22:42622369	T/C	TCF20	intron	0.902	0.95734	0.0232	0.05952		6
rs9623546	22:42655283	T/G	TCF20	intron	0.992	0.91439	0.0199	7.14E-6		3a
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information