SYNGR1

Basic Information

Gene Symbol	SYNGR1
Entrez Id	9145
Position	chr22:39745954..39781593
Description	synaptogyrin 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1007337	22:39781585	T/C	SYNGR1	untranslated-3	0.972	0.96425	0.0116	0.0017		7
rs1010169	22:39778167	A/G	SYNGR1	untranslated-3	0.993	1.03396	0.0116	0.00395		1f
rs10745050	22:39758881	A/G	SYNGR1	intron,near-gene-5	0.867	0.99671	0.0150	0.8242		5
rs111659885	22:39753395	C/G	SYNGR1	intron	0.732	1.08970	0.0601	0.1533		5
rs112796610	22:39755528	T/C	SYNGR1	intron	0.915	1.00371	0.0227	0.8712		7
rs113241772	22:39751897	A/G	SYNGR1	intron	0.670	0.91971	0.0556	0.1321		6
rs12152131	22:39751203	A/T	SYNGR1	intron	0.670	1.01035	0.0272	0.7048		5
rs12166817	22:39746424	A/C	SYNGR1	intron	0.975	0.98275	0.0109	0.1096		5
rs137695	22:39744223	A/G	SYNGR1	near-gene-5	0.810	1.00793	0.0232	0.7328		6
rs137698	22:39746803	A/C	SYNGR1	intron	0.975	0.98354	0.0109	0.1259		1f
rs137699	22:39748854	A/G	SYNGR1	intron	0.969	1.00904	0.0116	0.4345		5
rs137700	22:39749072	A/G	SYNGR1	intron	0.902	1.00421	0.0123	0.7317		7
rs137701	22:39750146	T/C	SYNGR1	intron	0.922	1.00190	0.0127	0.8805		6
rs137702	22:39750158	T/C	SYNGR1	intron	0.950	1.00491	0.0127	0.702		7
rs137703	22:39750241	A/G	SYNGR1	intron	0.967	1.00803	0.0116	0.4901		5
rs137705	22:39751394	T/C	SYNGR1	intron	0.944	1.00582	0.0118	0.6225		5
rs137707	22:39751401	T/C	SYNGR1	intron	0.906	1.00010	0.0127	0.9937		5
rs137708	22:39751774	A/G	SYNGR1	intron	0.926	1.00240	0.0127	0.8528		6
rs137709	22:39752203	I13/D	SYNGR1	intron	0.878	0.99263	0.0126	0.5577		-
rs142164994	22:39750582	T/C	SYNGR1	intron	0.739	0.96041	0.0278	0.1463		-
rs142242031	22:39752468	T/C	SYNGR1	intron	0.670	1.00210	0.0498	0.9665		-
rs142952844	22:39757623	C/G	SYNGR1	intron	0.723	0.97971	0.0384	0.5941		-
rs145554377	22:39770118	A/G	SYNGR1	intron	0.731	0.95925	0.0363	0.2507		-
rs149739938	22:39755568	A/G	SYNGR1	intron	0.861	1.03107	0.0275	0.2671		-
rs149861947	22:39767408	A/G	SYNGR1	intron	0.901	1.00723	0.0604	0.9045		-
rs1569499	22:39769818	T/C	SYNGR1	intron	0.975	1.03241	0.0114	0.00499		1f
rs2049985	22:39756650	C/G	SYNGR1	intron	0.939	1.01593	0.0127	0.2112		5
rs2049986	22:39756854	C/G	SYNGR1	intron	0.964	0.99432	0.0115	0.6224		4
rs2069235	22:39747780	A/G	SYNGR1	intron	0.967	1.01349	0.0116	0.2495		1d
rs2267407	22:39747050	A/G	SYNGR1	intron	0.957	1.01390	0.0125	0.2716		5
rs2267408	22:39758830	C/G	SYNGR1	intron,near-gene-5	0.716	1.02439	0.0139	0.08283		5
rs2413586	22:39753722	T/C	SYNGR1	intron	0.830	0.98807	0.0119	0.3114		5
rs2413587	22:39753779	T/C	SYNGR1	intron	0.947	1.00652	0.0118	0.5808		5
rs2413588	22:39755175	A/G	SYNGR1	intron	0.951	1.00642	0.0118	0.5837		5
rs2413589	22:39755689	T/C	SYNGR1	intron	0.952	1.00662	0.0127	0.6022		5
rs3788551	22:39752527	A/T	SYNGR1	intron	0.940	0.99015	0.0217	0.6482		1f
rs41274557	22:39780819	T/C	SYNGR1	untranslated-3	0.696	0.99025	0.0521	0.8514		2b
rs4594543	22:39762576	A/G	SYNGR1	intron	0.694	0.94639	0.0608	0.3646		6
rs4820377	22:39770780	A/G	SYNGR1	intron	0.967	0.96948	0.0114	0.006481		5
rs4821887	22:39756985	T/C	SYNGR1	intron	0.950	0.99422	0.0127	0.646		1f
rs4821888	22:39770597	A/G	SYNGR1	intron	0.967	1.03231	0.0114	0.005238		5
rs4821889	22:39777254	T/C	SYNGR1	intron	0.976	1.03386	0.0115	0.003808		3a
rs4821890	22:39777523	A/G	SYNGR1	intron	0.976	0.96715	0.0115	0.00365		5
rs6001552	22:39749984	T/G	SYNGR1	intron	0.956	0.99233	0.0219	0.7256		7
rs6001553	22:39751711	A/G	SYNGR1	intron	0.945	1.01187	0.0218	0.5891		7
rs61616683	22:39755773	T/C	SYNGR1	intron	0.941	1.01572	0.0127	0.2183		5
rs62228448	22:39769095	T/G	SYNGR1	intron	0.920	0.96667	0.0396	0.392		5
rs62228451	22:39780017	T/G	SYNGR1	untranslated-3	0.868	0.96802	0.0390	0.4046		6
rs6519190	22:39774525	A/G	SYNGR1	intron,near-gene-3	0.965	1.03149	0.0116	0.007407		7
rs73167316	22:39762311	A/G	SYNGR1	intron	0.934	1.03583	0.0337	0.296		6
rs73887476	22:39750356	A/G	SYNGR1	intron	0.655	1.05823	0.0562	0.3137		5
rs78751209	22:39767994	T/C	SYNGR1	intron	0.793	0.98560	0.0219	0.5079		4
rs79758575	22:39755279	A/G	SYNGR1	intron	0.671	0.90050	0.0528	0.04728		5
rs79951272	22:39755787	T/C	SYNGR1	intron	0.772	0.99531	0.0205	0.8178		5
rs80181382	22:39771114	A/G	SYNGR1	intron	0.697	0.98089	0.0582	0.7405		5
rs8135738	22:39777680	T/C	SYNGR1	intron	0.745	1.03025	0.0542	0.5819		5
rs8141261	22:39750457	T/C	SYNGR1	intron	0.976	1.00451	0.0220	0.839		5
rs909685	22:39747671	A/T	SYNGR1	intron	0.967	1.01400	0.0116	0.2295		1b
rs9607634	22:39745241	T/C	SYNGR1	near-gene-5	0.979	1.00864	0.0219	0.6935		4
rs9607635	22:39745260	T/G	SYNGR1	near-gene-5	0.968	1.00612	0.0223	0.7838		4
rs9607636	22:39745698	T/G	SYNGR1	near-gene-5	0.973	0.98432	0.0109	0.1446		4
rs9607637	22:39747419	A/C	SYNGR1	intron	0.978	1.00582	0.0220	0.7903		5
rs9607639	22:39757656	T/C	SYNGR1	intron	0.946	0.99780	0.0223	0.923		2b
rs9611159	22:39745417	T/C	SYNGR1	near-gene-5	0.980	0.97716	0.0277	0.4051		2b
rs9611160	22:39747418	A/G	SYNGR1	intron	0.978	1.00642	0.0220	0.7712		5
rs9611162	22:39767247	A/C	SYNGR1	intron	0.974	0.96938	0.0113	0.006032		6
rs9611164	22:39767291	A/G	SYNGR1	intron	0.950	0.96909	0.0113	0.005687		7
rs9611165	22:39775250	A/G	SYNGR1	intron	0.985	1.03376	0.0116	0.004213		7
rs9611166	22:39775268	T/C	SYNGR1	intron	0.985	1.03396	0.0116	0.003995		7
rs9611167	22:39775583	A/G	SYNGR1	intron	0.972	0.96773	0.0115	0.004361		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information