SYN2

Basic Information

Gene Symbol	SYN2
Entrez Id	6854
Position	chr3:12045862..12233532
Description	synapsin II
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1021679	3:12181598	A/G	SYN2	intron	0.994	1.02092	0.0232	0.3722		7
rs1039247	3:12186304	T/G	SYN2	intron,near-gene-5	0.996	0.98354	0.0210	0.4302		6
rs10510409	3:12083304	T/C	SYN2	intron	0.997	1.01187	0.0211	0.578		6
rs1087692	3:12120453	A/G	SYN2	intron	0.987	1.03967	0.0149	0.009236		6
rs111259094	3:12067303	T/G	SYN2	intron	0.780	1.10639	0.0509	0.04684		6
rs111371051	3:12207743	T/G	SYN2	intron	0.729	0.97824	0.0538	0.6832		5
rs111497521	3:12227307	T/G	SYN2	intron,near-gene-3	0.638	0.97346	0.0609	0.6581		7
rs111510723	3:12109696	T/C	SYN2	intron	0.866	0.92210	0.0300	0.006904		6
rs111833688	3:12173015	T/C	SYN2	intron	0.864	1.00823	0.0542	0.88		4
rs111842412	3:12068832	T/C	SYN2	intron	0.833	1.05866	0.0578	0.3245		4
rs112014711	3:12124873	A/G	SYN2	intron	0.874	1.08058	0.0541	0.1517		7
rs112110461	3:12186515	A/G	SYN2	intron,near-gene-5	0.798	1.00904	0.0307	0.77		7
rs112253409	3:12148472	A/G	SYN2	intron	0.740	1.12806	0.0625	0.0538		7
rs112413890	3:12147038	A/G	SYN2	intron	0.774	0.97746	0.0553	0.6795		6
rs112514054	3:12086257	A/G	SYN2	intron	0.844	1.07026	0.0339	0.04518		7
rs112517560	3:12106685	A/G	SYN2	intron	0.708	1.13304	0.0642	0.0516		7
rs112586888	3:12132480	T/G	SYN2	intron	0.716	1.00451	0.0545	0.9335		7
rs113732310	3:12229200	A/G	SYN2	intron	0.741	0.95047	0.0562	0.3663		4
rs114034838	3:12104057	A/G	SYN2	intron	0.872	0.91457	0.0342	0.008944		7
rs114344742	3:12179304	A/G	SYN2	intron	0.702	0.92367	0.0640	0.2148		6
rs115025291	3:12096615	C/G	SYN2	intron	0.855	1.00904	0.0282	0.7488		6
rs115255204	3:12149142	A/G	SYN2	intron	0.888	1.00622	0.0274	0.8209		4
rs115633989	3:12176274	A/G	SYN2	intron	0.816	1.01684	0.0261	0.5223		6
rs115636614	3:12168317	T/C	SYN2	intron	0.744	1.04645	0.0421	0.2814		6
rs115838730	3:12193097	A/C	SYN2	intron	0.744	1.02583	0.0603	0.673		5
rs115872705	3:12156059	T/C	SYN2	intron	0.887	0.99541	0.0273	0.8667		6
rs115937369	3:12099022	A/T	SYN2	intron	0.954	0.98305	0.0286	0.5493		7
rs116265536	3:12077087	A/G	SYN2	intron	0.780	0.90348	0.0509	0.04604		7
rs116286676	3:12156138	C/G	SYN2	intron	0.903	1.03097	0.0332	0.3585		6
rs116369596	3:12083184	A/G	SYN2	intron	0.782	1.10694	0.0509	0.04601		7
rs116565791	3:12170507	A/G	SYN2	intron	0.887	0.99581	0.0273	0.8767		6
rs116743320	3:12050306	T/C	SYN2	intron	0.766	0.95066	0.0434	0.2438		5
rs11716141	3:12108754	T/C	SYN2	intron	0.995	1.00602	0.0161	0.7066		6
rs11914767	3:12173658	T/C	SYN2	intron	0.995	1.00000	0.0268	0.9992		7
rs11916408	3:12210132	T/C	SYN2	intron	0.997	1.00331	0.0267	0.9026		6
rs11918037	3:12118809	A/T	SYN2	intron	0.807	1.04415	0.0268	0.107		6
rs11918040	3:12206425	T/G	SYN2	intron	0.996	0.99980	0.0268	0.9943		6
rs11920045	3:12208049	A/G	SYN2	intron	0.997	1.00230	0.0269	0.9305		6
rs11921394	3:12179649	T/G	SYN2	intron	1.000	0.99920	0.0268	0.9774		4
rs11922042	3:12206489	T/C	SYN2	intron	0.979	0.99710	0.0277	0.9158		6
rs11922864	3:12161535	T/C	SYN2	intron	0.999	0.99880	0.0269	0.9645		6
rs11923383	3:12204137	A/G	SYN2	intron	0.996	1.00240	0.0267	0.9277		5
rs11924163	3:12210153	A/G	SYN2	intron	0.997	0.99700	0.0266	0.9093		6
rs11924362	3:12210784	A/T	SYN2	intron	0.997	0.99681	0.0267	0.9042		5
rs12233399	3:12125041	A/T	SYN2	intron	0.991	0.99253	0.0161	0.6398		7
rs12485253	3:12185555	A/G	SYN2	intron,near-gene-5	0.876	1.06471	0.0535	0.2411		5
rs12485638	3:12050051	A/C	SYN2	intron	0.915	1.00713	0.0287	0.8042		5
rs12486565	3:12204690	T/C	SYN2	intron	0.985	0.99561	0.0276	0.8744		7
rs12492981	3:12058246	T/C	SYN2	intron	0.983	0.99970	0.0272	0.9905		6
rs12494778	3:12088379	A/G	SYN2	intron	0.934	1.00180	0.0255	0.9432		7
rs12495716	3:12177661	A/G	SYN2	intron	0.999	1.00200	0.0269	0.9414		6
rs12496936	3:12166338	A/G	SYN2	intron	0.999	0.99840	0.0269	0.9523		6
rs12629034	3:12097669	T/G	SYN2	intron	0.776	0.99263	0.0141	0.5995		6
rs13064273	3:12216131	A/G	SYN2	intron	0.925	1.02276	0.0201	0.2649		7
rs13064800	3:12151657	A/C	SYN2	intron	0.996	1.01369	0.0212	0.5215		6
rs13064956	3:12170251	T/C	SYN2	intron	0.996	0.99960	0.0160	0.981		6
rs13070993	3:12217797	T/C	SYN2	intron	0.988	1.01593	0.0212	0.4559		5
rs13079332	3:12148848	A/G	SYN2	intron	0.997	1.01461	0.0211	0.4937		3a
rs137886308	3:12209075	T/C	SYN2	intron	0.809	1.09090	0.0406	0.03226		-
rs140330551	3:12094727	C/G	SYN2	intron	0.854	0.97570	0.0360	0.4954		-
rs140410207	3:12133140	A/G	SYN2	intron	0.780	1.06460	0.0486	0.1979		-
rs141026521	3:12117510	T/C	SYN2	intron	0.664	1.04216	0.0493	0.4026		-
rs141159119	3:12156017	A/G	SYN2	intron	0.670	0.97531	0.0634	0.6937		-
rs142615956	3:12088767	A/G	SYN2	intron	0.776	1.06545	0.0486	0.1923		-
rs142693485	3:12229216	T/C	SYN2	intron	0.701	1.03138	0.0584	0.5968		-
rs142903762	3:12089739	A/G	SYN2	intron	0.802	0.93146	0.0572	0.2144		-
rs144352105	3:12184503	A/G	SYN2	intron	0.804	0.97181	0.0568	0.6152		-
rs145040445	3:12223657	A/G	SYN2	intron	0.915	1.00010	0.0442	0.9977		-
rs145181907	3:12064285	T/C	SYN2	intron	0.700	1.01066	0.0533	0.843		-
rs145351952	3:12149898	A/G	SYN2	intron	0.739	1.04019	0.0583	0.4986		-
rs145477558	3:12069788	C/G	SYN2	intron	0.677	1.04770	0.0634	0.4616		-
rs145599277	3:12077247	A/C	SYN2	intron	0.779	0.94563	0.0478	0.2427		-
rs146058284	3:12143636	T/C	SYN2	intron	0.925	0.97239	0.0409	0.4938		-
rs146621855	3:12100502	C/G	SYN2	intron	0.710	0.99641	0.0545	0.9475		-
rs147003295	3:12186283	A/G	SYN2	intron,near-gene-5	0.977	0.97307	0.0231	0.2369		-
rs147433183	3:12120002	A/G	SYN2	intron	0.998	0.98718	0.0211	0.5404		-
rs147453400	3:12204314	A/G	SYN2	intron	0.629	1.06823	0.0493	0.1809		-
rs148260600	3:12075098	A/G	SYN2	intron	0.934	0.98265	0.0523	0.738		-
rs148796792	3:12149280	A/G	SYN2	intron	0.818	0.98226	0.0479	0.709		-
rs148863761	3:12138923	A/G	SYN2	intron	0.668	1.02562	0.0635	0.6901		-
rs149769005	3:12146130	A/G	SYN2	intron	0.932	0.99173	0.0368	0.8219		-
rs149822980	3:12140383	T/C	SYN2	intron	0.662	0.91824	0.0580	0.1415		-
rs151156302	3:12128251	C/G	SYN2	intron	0.793	1.01298	0.0491	0.7924		-
rs1587385	3:12129236	C/G	SYN2	intron	0.997	0.98403	0.0210	0.4436		6
rs160113	3:12145239	T/C	SYN2	intron	0.997	1.03138	0.0128	0.01569		7
rs160208	3:12159294	A/G	SYN2	intron	0.997	0.95571	0.0154	0.00323		5
rs160210	3:12152723	A/G	SYN2	intron	0.918	1.00541	0.0316	0.8646		7
rs160211	3:12150852	A/G	SYN2	intron	1.000	0.93735	0.0181	0.0003538		7
rs160212	3:12166977	C/G	SYN2	intron	1.000	1.06577	0.0181	0.0004409		6
rs160213	3:12168656	A/G	SYN2	intron	0.996	0.97365	0.0120	0.02589		7
rs160217	3:12130637	A/C	SYN2	intron	1.000	0.93857	0.0181	0.0004684		7
rs160218	3:12132727	A/G	SYN2	intron	0.999	1.06524	0.0181	0.0004795		6
rs160219	3:12134937	C/G	SYN2	intron	1.000	0.93913	0.0181	0.0005302		7
rs160220	3:12135706	A/G	SYN2	intron	1.000	0.93913	0.0181	0.0005292		6
rs1661584	3:12230439	T/C	SYN2	intron	0.978	0.97210	0.0121	0.01914		5
rs167408	3:12088448	A/G	SYN2	intron	1.000	1.04477	0.0144	0.002319		7
rs167436	3:12152187	A/G	SYN2	intron	0.915	0.99054	0.0166	0.5679		7
rs1680247	3:12098847	T/C	SYN2	intron	0.871	1.01511	0.0341	0.6598		7
rs17035778	3:12118344	A/T	SYN2	intron	0.914	1.02829	0.0170	0.1014		7
rs17035806	3:12148393	A/G	SYN2	intron	0.991	0.99362	0.0160	0.689		7
rs17035842	3:12158597	C/G	SYN2	intron	0.994	1.01949	0.0232	0.4038		5
rs17035847	3:12161107	T/G	SYN2	intron	0.989	0.98206	0.0232	0.4355		3a
rs17035857	3:12163060	A/G	SYN2	intron	0.813	0.97161	0.0564	0.61		6
rs17035861	3:12164213	A/G	SYN2	intron	0.989	1.01796	0.0232	0.441		6
rs17035868	3:12167716	T/G	SYN2	intron	0.990	0.98177	0.0232	0.4258		7
rs17035871	3:12171012	A/G	SYN2	intron	0.997	1.01918	0.0232	0.4133		6
rs17035873	3:12172369	A/G	SYN2	intron	0.996	0.97971	0.0232	0.3775		7
rs17035874	3:12172744	T/C	SYN2	intron	0.996	0.98000	0.0232	0.3826		7
rs17035883	3:12176975	T/C	SYN2	intron	0.997	0.97922	0.0232	0.3654		5
rs17035910	3:12183083	C/G	SYN2	intron	0.993	1.02306	0.0233	0.3288		5
rs17035913	3:12184338	A/G	SYN2	intron	0.993	1.02357	0.0233	0.3168		5
rs17035957	3:12201111	A/G	SYN2	intron,near-gene-5	0.973	1.01633	0.0232	0.4848		5
rs17612402	3:12059993	A/T	SYN2	intron	0.993	0.97677	0.0234	0.3156		5
rs17612444	3:12060484	A/G	SYN2	intron	0.992	1.02747	0.0232	0.2419		7
rs17624249	3:12133641	A/G	SYN2	intron	0.931	0.99243	0.0372	0.8374		7
rs17624700	3:12151206	A/G	SYN2	intron	0.991	1.01939	0.0234	0.4126		7
rs17669062	3:12043966	T/C	SYN2	near-gene-5	0.811	1.01177	0.0222	0.5982		5
rs17669333	3:12061036	A/G	SYN2	intron	0.993	1.02378	0.0234	0.3152		7
rs17670862	3:12174012	T/C	SYN2	intron	0.996	0.97981	0.0233	0.38		6
rs17671091	3:12182778	T/C	SYN2	intron	0.993	0.97697	0.0234	0.32		7
rs17793495	3:12227577	A/G	SYN2	intron,near-gene-3	0.981	0.98797	0.0256	0.6371		7
rs181667775	3:12092442	A/C	SYN2	intron	0.671	1.03863	0.0596	0.5245		-
rs181721432	3:12154126	T/C	SYN2	intron	0.934	0.98472	0.0558	0.7824		-
rs186089181	3:12046123	A/C	SYN2	missense	0.638	0.99840	0.0376	0.9666		-
rs190970487	3:12068537	T/G	SYN2	intron	0.653	1.10738	0.0569	0.07295		-
rs191216368	3:12179443	A/T	SYN2	intron	0.747	0.96474	0.0657	0.5846		-
rs191643833	3:12064861	T/C	SYN2	intron	0.759	1.07605	0.0505	0.1471		-
rs1994077	3:12117220	A/G	SYN2	intron	0.993	1.00642	0.0161	0.689		6
rs2030150	3:12091690	T/C	SYN2	intron	0.986	1.01035	0.0211	0.624		7
rs2119810	3:12187575	C/G	SYN2	intron,untranslated-5	0.934	1.02809	0.0523	0.5969		6
rs2119812	3:12131687	T/C	SYN2	intron	0.997	1.01339	0.0211	0.5289		6
rs217049	3:12060917	T/C	SYN2	intron	0.999	0.95724	0.0144	0.00238		7
rs219015	3:12215375	C/G	SYN2	intron	0.985	0.96609	0.0149	0.02094		6
rs2289708	3:12225353	C/G	SYN2	intron,untranslated-3	0.991	0.99710	0.0269	0.9133		7
rs2584064	3:12185939	A/G	SYN2	intron,near-gene-5	1.000	1.06631	0.0181	0.0003998		2b
rs2600235	3:12046445	T/G	SYN2	intron	0.921	1.04258	0.0143	0.003483		5
rs2600243	3:12111192	A/G	SYN2	intron	0.994	1.01898	0.0120	0.1161		7
rs2618384	3:12050408	A/G	SYN2	intron	0.989	0.99970	0.0199	0.9864		5
rs2618385	3:12050397	A/G	SYN2	intron	0.989	0.99980	0.0199	0.9909		5
rs2618386	3:12049627	T/G	SYN2	intron	0.990	0.99960	0.0199	0.9821		5
rs2618387	3:12049463	A/T	SYN2	intron	0.998	0.95734	0.0144	0.002401		5
rs2618389	3:12048734	T/C	SYN2	intron	0.998	0.95734	0.0144	0.002399		5
rs2618390	3:12047854	A/G	SYN2	intron	0.990	0.99920	0.0201	0.968		5
rs2618391	3:12047723	C/G	SYN2	intron	0.991	1.00050	0.0199	0.981		5
rs2618396	3:12079287	T/G	SYN2	intron	0.997	0.97599	0.0120	0.04357		7
rs2618407	3:12078425	C/G	SYN2	intron	0.997	0.97619	0.0120	0.04477		7
rs2623873	3:12045767	T/G	SYN2	near-gene-5	0.881	1.00190	0.0158	0.9047		3a
rs2623879	3:12046446	T/C	SYN2	intron	0.919	1.03769	0.0140	0.008067		5
rs2623880	3:12046530	A/G	SYN2	intron	0.990	1.00461	0.0201	0.818		5
rs2623882	3:12049218	A/G	SYN2	intron	0.990	0.98926	0.0158	0.4962		5
rs2623901	3:12063500	T/G	SYN2	intron	0.994	1.02542	0.0121	0.03769		7
rs2648337	3:12162280	A/G	SYN2	intron	0.997	1.04498	0.0154	0.004234		5
rs2648346	3:12110787	C/G	SYN2	intron	0.996	1.02429	0.0120	0.04578		6
rs2648347	3:12057200	T/G	SYN2	intron	0.990	1.03749	0.0131	0.005063		7
rs2923857	3:12046364	C/G	SYN2	missense	0.991	0.95993	0.0144	0.004437		5
rs308950	3:12202866	C/G	SYN2	intron	0.993	1.04394	0.0156	0.005688		7
rs308951	3:12201468	A/C	SYN2	intron,near-gene-5	0.951	1.02173	0.0119	0.0709		7
rs308955	3:12188630	A/C	SYN2	intron,near-gene-5	0.999	1.06641	0.0181	0.0003894		6
rs308956	3:12188658	A/G	SYN2	intron,near-gene-5	0.997	0.97258	0.0120	0.02051		6
rs308957	3:12189306	A/G	SYN2	intron,near-gene-5	0.856	0.91220	0.0307	0.00277		7
rs308958	3:12189510	A/T	SYN2	intron,near-gene-5	0.995	0.95782	0.0154	0.005145		6
rs308961	3:12150014	T/G	SYN2	intron	0.981	0.99531	0.0110	0.6675		6
rs308962	3:12148751	T/C	SYN2	intron	1.000	0.93904	0.0181	0.0005184		5
rs308963	3:12181751	C/G	SYN2	intron	0.995	1.02881	0.0120	0.01788		7
rs308964	3:12183011	A/G	SYN2	intron	1.000	1.06620	0.0181	0.0004064		5
rs308965	3:12183741	C/G	SYN2	intron	1.000	1.06620	0.0181	0.000404		5
rs308966	3:12171439	A/T	SYN2	intron	0.998	1.02788	0.0120	0.0216		5
rs308967	3:12176189	A/T	SYN2	intron	1.000	0.93810	0.0181	0.0004244		7
rs308969	3:12177083	T/C	SYN2	intron	1.000	0.93810	0.0181	0.0004226		6
rs308971	3:12116620	A/G	SYN2	intron	0.991	0.95542	0.0154	0.00299		6
rs308972	3:12116676	A/G	SYN2	intron	0.994	0.97511	0.0120	0.03636		6
rs308973	3:12118013	A/C	SYN2	intron	1.000	0.93913	0.0181	0.0005249		6
rs308974	3:12128779	A/G	SYN2	intron	1.000	0.93866	0.0181	0.0004748		7
rs310754	3:12216187	A/G	SYN2	intron	0.982	0.97200	0.0121	0.01866		7
rs310758	3:12218523	T/C	SYN2	intron	0.991	0.97132	0.0121	0.01581		7
rs310760	3:12220535	T/C	SYN2	intron,near-gene-3	0.993	0.93829	0.0185	0.0005705		5
rs310761	3:12221429	A/G	SYN2	intron	0.993	1.06567	0.0185	0.0005864		7
rs310762	3:12224151	T/C	SYN2	intron	0.981	1.01420	0.0109	0.1935		5
rs310764	3:12232074	A/G	SYN2	coding-synon	0.994	1.06311	0.0185	0.0009336		7
rs34104796	3:12214274	C/G	SYN2	intron	0.831	0.98472	0.0285	0.5897		7
rs34206487	3:12145349	A/G	SYN2	intron	1.010	0.98896	0.0210	0.5965		7
rs34831171	3:12173655	T/C	SYN2	intron	0.996	0.99950	0.0160	0.9752		7
rs35381451	3:12118808	A/T	SYN2	intron	0.907	1.01511	0.0134	0.2627		6
rs35522627	3:12188566	A/C	SYN2	intron,near-gene-5	0.995	1.01471	0.0211	0.4891		7
rs35929545	3:12145244	T/G	SYN2	intron	0.637	0.96368	0.0631	0.558		7
rs35976104	3:12090463	A/G	SYN2	intron	0.898	0.99750	0.0132	0.8479		7
rs366270	3:12138889	A/G	SYN2	intron	0.984	0.97181	0.0120	0.01755		6
rs378006	3:12076712	T/G	SYN2	intron	0.997	1.02347	0.0120	0.05368		6
rs379917	3:12138956	A/G	SYN2	intron	0.999	1.06577	0.0181	0.000432		7
rs381938	3:12075336	T/G	SYN2	intron	0.997	0.97590	0.0120	0.04264		7
rs3821616	3:12150194	A/G	SYN2	intron	0.991	0.98098	0.0234	0.4118		6
rs3913280	3:12052922	T/G	SYN2	intron	0.970	0.99611	0.0201	0.8446		5
rs3931883	3:12212285	A/G	SYN2	intron	0.991	0.99850	0.0268	0.9551		7
rs394945	3:12075117	T/C	SYN2	intron	0.991	1.04404	0.0144	0.00277		6
rs402122	3:12141389	T/C	SYN2	intron	0.953	0.97025	0.0127	0.0173		7
rs407610	3:12139143	T/G	SYN2	intron	0.969	1.06983	0.0180	0.000177		7
rs408748	3:12065683	C/G	SYN2	intron	0.871	0.97746	0.0118	0.05385		7
rs414721	3:12055556	T/C	SYN2	intron	0.993	0.97511	0.0120	0.03614		7
rs422584	3:12056247	A/G	SYN2	intron	0.994	1.02552	0.0120	0.03635		6
rs444788	3:12147476	A/G	SYN2	intron	1.000	1.06577	0.0181	0.0004368		6
rs4488811	3:12182028	T/C	SYN2	intron	0.997	1.01349	0.0211	0.5255		7
rs449605	3:12065682	A/T	SYN2	intron	0.871	1.02143	0.0118	0.07339		7
rs453011	3:12118798	T/C	SYN2	intron	0.850	0.97453	0.0145	0.07547		6
rs454615	3:12077010	T/C	SYN2	intron	1.000	1.04436	0.0144	0.00254		7
rs4549255	3:12063099	A/T	SYN2	intron	0.993	1.02378	0.0234	0.314		5
rs4684095	3:12047765	T/C	SYN2	intron	0.993	1.02214	0.0116	0.05834		5
rs4684096	3:12085707	A/C	SYN2	intron	0.688	1.01227	0.0127	0.3367		7
rs4684098	3:12171810	A/G	SYN2	intron	0.998	0.97453	0.0120	0.03155		7
rs4684841	3:12192440	A/T	SYN2	intron	0.995	0.93885	0.0181	0.0005024		5
rs58313189	3:12160617	T/C	SYN2	intron	0.988	0.98167	0.0232	0.4246		7
rs58683249	3:12140265	T/C	SYN2	intron	0.980	0.98039	0.0208	0.3415		7
rs58999612	3:12171621	T/C	SYN2	intron	0.996	1.02010	0.0232	0.3915		5
rs59067429	3:12160677	A/G	SYN2	intron	0.988	1.01867	0.0232	0.4244		7
rs59306735	3:12062003	T/C	SYN2	intron	0.990	0.98689	0.0210	0.5292		6
rs59504240	3:12160982	C/G	SYN2	intron	0.988	0.98314	0.0231	0.4638		7
rs60564283	3:12227591	T/C	SYN2	intron,near-gene-3	0.991	0.99990	0.0270	0.9962		7
rs61289654	3:12190384	T/C	SYN2	intron	0.967	0.98857	0.0144	0.4246		4
rs62240361	3:12047275	A/G	SYN2	intron	0.995	1.02224	0.0116	0.05705		5
rs62240362	3:12066803	A/G	SYN2	intron	0.932	0.99203	0.0559	0.8859		5
rs62240407	3:12121236	T/C	SYN2	intron	0.927	0.94176	0.0229	0.008788		7
rs62240408	3:12136085	A/G	SYN2	intron	0.927	0.94167	0.0229	0.008647		5
rs62240409	3:12143645	T/G	SYN2	intron	0.934	0.98837	0.0558	0.8334		6
rs62240442	3:12227819	A/G	SYN2	intron	0.899	1.05106	0.0245	0.04257		7
rs6442305	3:12109805	A/G	SYN2	intron	0.991	1.00270	0.0271	0.9209		7
rs6442307	3:12143355	A/C	SYN2	intron	0.996	0.98069	0.0209	0.3508		7
rs6442308	3:12203888	A/G	SYN2	intron	0.995	1.00050	0.0266	0.9845		5
rs665505	3:12140201	T/C	SYN2	intron	1.000	1.06492	0.0181	0.0005233		6
rs6765812	3:12065852	A/G	SYN2	intron	0.985	1.01045	0.0271	0.7		7
rs6767059	3:12076562	A/G	SYN2	intron	0.997	0.98857	0.0211	0.5854		7
rs6768568	3:12189818	A/G	SYN2	intron,near-gene-5	0.995	1.01471	0.0211	0.4882		5
rs6781687	3:12216260	A/G	SYN2	intron	0.978	0.98324	0.0209	0.4189		7
rs6792867	3:12189900	A/C	SYN2	intron,near-gene-5	0.995	0.98551	0.0211	0.4881		5
rs71304083	3:12111642	A/G	SYN2	intron	0.994	0.99332	0.0161	0.6796		6
rs71304084	3:12118900	T/C	SYN2	intron	0.993	0.99810	0.0163	0.9079		7
rs71304085	3:12118915	A/G	SYN2	intron	0.993	1.00672	0.0161	0.6753		6
rs71304088	3:12181133	T/C	SYN2	intron	0.997	0.98580	0.0211	0.4987		5
rs71624931	3:12167148	A/G	SYN2	intron	0.997	1.01440	0.0211	0.4997		6
rs71628736	3:12156535	A/C	SYN2	intron	0.997	1.01481	0.0211	0.4876		7
rs727682	3:12152820	A/G	SYN2	intron	0.958	0.97511	0.0220	0.2526		7
rs73013521	3:12082288	A/G	SYN2	intron	0.902	0.99203	0.0263	0.7619		7
rs73015310	3:12144776	A/G	SYN2	intron	0.913	0.99471	0.0256	0.8344		6
rs73813125	3:12148263	T/C	SYN2	intron	0.997	0.98069	0.0209	0.3506		7
rs73813126	3:12153646	A/G	SYN2	intron	0.992	0.98187	0.0233	0.4306		5
rs73813127	3:12160503	T/C	SYN2	intron	0.988	0.98167	0.0232	0.4248		6
rs73813128	3:12160570	T/C	SYN2	intron	0.988	0.98167	0.0232	0.4246		6
rs73813129	3:12167418	T/C	SYN2	intron	0.963	0.98147	0.0230	0.4156		5
rs73813130	3:12172010	A/G	SYN2	intron	0.996	1.02041	0.0232	0.3843		7
rs73813133	3:12176314	A/G	SYN2	intron	0.996	0.97893	0.0232	0.3589		7
rs73813137	3:12191896	T/C	SYN2	intron	0.990	1.02388	0.0233	0.3103		5
rs74213196	3:12046131	A/C	SYN2	missense	0.615	1.01126	0.0204	0.5833		5
rs74795148	3:12156039	A/G	SYN2	intron	0.994	1.01918	0.0232	0.414		6
rs74806943	3:12180090	C/G	SYN2	intron	0.936	0.99035	0.0126	0.4437		7
rs74859369	3:12060824	A/G	SYN2	intron	0.980	1.00120	0.0274	0.965		7
rs74956164	3:12158114	A/G	SYN2	intron	0.953	1.01898	0.0286	0.5112		7
rs74990785	3:12046912	A/G	SYN2	intron	0.993	1.02214	0.0234	0.35		5
rs75055685	3:12098755	A/G	SYN2	intron	0.992	0.97560	0.0234	0.2901		6
rs75079961	3:12172761	A/G	SYN2	intron	0.996	0.97951	0.0233	0.3739		7
rs75140719	3:12104742	T/C	SYN2	intron	0.707	0.99681	0.0329	0.9225		5
rs75228524	3:12108684	A/G	SYN2	intron	0.625	1.11115	0.0553	0.05644		6
rs75244809	3:12186399	T/C	SYN2	intron,near-gene-5	0.996	1.00682	0.0271	0.8013		6
rs75353030	3:12130997	A/G	SYN2	intron	0.979	1.02922	0.0232	0.2149		6
rs75378034	3:12080778	A/T	SYN2	intron	0.992	0.97638	0.0233	0.3062		6
rs75397150	3:12155650	A/G	SYN2	intron	0.994	0.98118	0.0232	0.4142		7
rs75472361	3:12045135	T/C	SYN2	near-gene-5	0.993	0.97844	0.0234	0.3508		5
rs75545917	3:12053932	A/G	SYN2	intron	0.982	1.02255	0.0234	0.3413		5
rs75659266	3:12212877	A/G	SYN2	intron	0.982	0.98847	0.0235	0.6222		6
rs75719041	3:12223413	T/C	SYN2	intron	0.892	0.97521	0.0268	0.349		5
rs75794610	3:12129076	A/C	SYN2	intron	0.981	0.98177	0.0238	0.4401		6
rs76338639	3:12052369	A/G	SYN2	intron	0.992	1.02204	0.0234	0.352		5
rs76434916	3:12052639	C/G	SYN2	intron	0.991	1.02204	0.0234	0.3514		5
rs7644513	3:12209508	T/C	SYN2	intron	0.997	1.00300	0.0267	0.9107		5
rs76594829	3:12097682	A/T	SYN2	intron	0.911	0.97424	0.0227	0.2497		6
rs76709921	3:12111162	T/C	SYN2	intron	0.858	1.01177	0.0282	0.6781		7
rs76958853	3:12138234	A/C	SYN2	intron	0.982	1.02819	0.0231	0.2282		6
rs77116964	3:12045836	C/G	SYN2	near-gene-5,untranslated-5	0.932	0.96012	0.0140	0.00375		4
rs77296114	3:12093995	A/G	SYN2	intron	0.990	0.99144	0.0273	0.7527		6
rs77594417	3:12103900	C/G	SYN2	intron	0.993	1.02378	0.0233	0.3133		7
rs77652485	3:12052792	A/T	SYN2	intron	0.992	1.02204	0.0234	0.3508		7
rs77811710	3:12186808	A/G	SYN2	intron,near-gene-5	0.992	0.97658	0.0233	0.3096		7
rs77823770	3:12044412	A/G	SYN2	near-gene-5	0.992	0.97863	0.0234	0.3558		5
rs77867338	3:12098005	A/G	SYN2	intron	0.930	0.98324	0.0150	0.2599		7
rs77889122	3:12209621	A/G	SYN2	intron	0.995	0.99541	0.0270	0.8651		7
rs78007059	3:12100347	C/G	SYN2	intron	0.784	1.05274	0.0314	0.1014		7
rs78052305	3:12130490	T/G	SYN2	intron	0.981	0.98167	0.0238	0.4376		6
rs78096090	3:12230378	A/G	SYN2	intron	0.878	0.95801	0.0532	0.4201		5
rs78220281	3:12144328	A/G	SYN2	intron	0.987	0.98128	0.0235	0.4207		6
rs78230452	3:12146123	A/G	SYN2	intron	0.987	0.97307	0.0230	0.2342		7
rs78300434	3:12145357	T/C	SYN2	intron	0.988	0.98118	0.0235	0.419		7
rs78305626	3:12146487	A/G	SYN2	intron	0.742	1.03697	0.0373	0.3295		7
rs78342715	3:12230833	C/G	SYN2	intron	0.982	1.00944	0.0234	0.6887		7
rs78392478	3:12149468	T/C	SYN2	intron	0.989	1.01990	0.0234	0.4006		7
rs78445517	3:12169419	T/C	SYN2	intron	0.997	0.99273	0.0271	0.787		6
rs78478178	3:12103598	A/G	SYN2	intron	0.993	1.02378	0.0233	0.3133		7
rs78512510	3:12226789	A/G	SYN2	intron,untranslated-3	0.901	1.00521	0.0334	0.8767		5
rs78518024	3:12207461	T/C	SYN2	intron	0.988	0.98452	0.0212	0.4611		4
rs78544396	3:12147630	C/G	SYN2	intron	0.987	1.02850	0.0229	0.221		7
rs78567438	3:12178019	A/T	SYN2	intron	0.996	1.02122	0.0233	0.368		7
rs78666029	3:12053485	T/C	SYN2	intron	0.992	0.97834	0.0234	0.3482		7
rs78754955	3:12230387	T/C	SYN2	intron	0.901	1.01725	0.0275	0.5336		5
rs78761661	3:12080781	A/G	SYN2	intron	0.782	0.90348	0.0509	0.04613		6
rs78766240	3:12067966	A/G	SYN2	intron	0.820	1.03097	0.0473	0.5188		6
rs78866461	3:12051917	A/G	SYN2	intron	0.992	1.02194	0.0234	0.3542		7
rs78941961	3:12058753	A/C	SYN2	intron	0.993	1.02337	0.0234	0.3232		7
rs78979257	3:12183154	A/G	SYN2	intron	0.879	1.00884	0.0261	0.7369		5
rs79186078	3:12191441	T/C	SYN2	intron	0.909	0.97161	0.0333	0.3882		5
rs79187649	3:12159193	T/C	SYN2	intron	0.932	1.00955	0.0129	0.4602		5
rs79293336	3:12186568	A/G	SYN2	intron,near-gene-5	0.992	0.97658	0.0233	0.3094		6
rs79624759	3:12045891	T/C	SYN2	untranslated-5	0.692	0.97638	0.0513	0.6421		2b
rs79658324	3:12130256	A/G	SYN2	intron	0.995	1.00090	0.0270	0.9721		6
rs79735517	3:12155219	C/G	SYN2	intron	0.995	1.00713	0.0271	0.7921		7
rs79772513	3:12087753	C/G	SYN2	intron	0.985	0.97658	0.0233	0.3093		7
rs79779580	3:12101997	T/G	SYN2	intron	0.874	1.03593	0.0546	0.5173		4
rs79804472	3:12061578	A/G	SYN2	intron	0.993	0.97677	0.0234	0.3148		6
rs79897630	3:12108634	A/G	SYN2	intron	0.994	1.02634	0.0233	0.2649		7
rs80130857	3:12222830	T/C	SYN2	intron	0.872	0.96764	0.0520	0.5261		7
rs80235264	3:12155697	T/G	SYN2	intron	0.994	0.98118	0.0232	0.4142		6
rs900138	3:12098825	A/G	SYN2	intron	0.991	1.02409	0.0121	0.0492		7
rs92090	3:12177641	T/G	SYN2	intron	0.998	0.97239	0.0120	0.01952		5
rs9310398	3:12056755	A/G	SYN2	intron	0.982	0.99312	0.0271	0.7993		5
rs9310399	3:12160736	A/G	SYN2	intron	0.995	1.00391	0.0269	0.8856		6
rs931676	3:12188443	T/C	SYN2	coding-synon,intron,near-gene-5	0.991	1.02429	0.0233	0.3032		6
rs9808956	3:12215656	A/G	SYN2	intron	0.983	0.99094	0.0170	0.5926		6
rs9813811	3:12068164	A/G	SYN2	intron	0.981	1.00733	0.0270	0.7882		7
rs9819041	3:12129308	A/G	SYN2	intron	0.994	0.99830	0.0270	0.9492		6
rs9820009	3:12129920	C/G	SYN2	intron	0.995	0.99910	0.0270	0.9722		6
rs9822753	3:12075218	T/C	SYN2	intron	0.920	0.97716	0.0303	0.4452		6
rs9826746	3:12132436	A/T	SYN2	intron	0.995	0.99890	0.0270	0.9671		7
rs9828885	3:12136996	T/C	SYN2	intron	0.650	0.97113	0.0221	0.1841		7
rs9844367	3:12211048	T/C	SYN2	intron	0.996	0.99900	0.0266	0.9709		5
rs9851144	3:12216130	T/C	SYN2	intron	0.996	1.00170	0.0269	0.9491		7
rs9870180	3:12170544	T/C	SYN2	intron	0.999	0.99840	0.0269	0.9533		7
rs9873301	3:12065264	T/G	SYN2	intron	0.985	1.00975	0.0270	0.7197		6
rs9877371	3:12187651	T/C	SYN2	intron,untranslated-5	0.999	0.99950	0.0269	0.9841		7
rs99365	3:12194085	T/C	SYN2	intron,near-gene-3	0.991	1.04248	0.0155	0.007402		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information