STX1A

Basic Information

Gene Symbol	STX1A
Entrez Id	6804
Position	chr7:73113535..73134017
Description	syntaxin 1A (brain)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10227463	7:73128971	T/C	STX1A	intron	0.788	1.00541	0.0123	0.659		7
rs10246419	7:73121713	A/G	STX1A	intron	0.923	1.00552	0.0112	0.6256		2b
rs13245286	7:73122508	T/C	STX1A	intron	0.898	0.98797	0.0112	0.2824		7
rs137973063	7:73133300	A/C	STX1A	intron	0.697	0.97015	0.0368	0.41		-
rs2228607	7:73122923	A/G	STX1A	coding-synon,ncRNA	0.927	1.00411	0.0110	0.713		5
rs2229854	7:73122977	A/G	STX1A	coding-synon,ncRNA	0.864	0.99870	0.0208	0.9491		5
rs28526693	7:73133414	T/C	STX1A	intron	0.853	0.96117	0.0151	0.008859		4
rs3793243	7:73121347	A/G	STX1A	intron	0.921	1.00944	0.0111	0.3969		5
rs4717102	7:73120461	T/C	STX1A	intron	0.819	1.01136	0.0368	0.7589		2b
rs6951030	7:73133241	T/G	STX1A	intron	0.866	0.96146	0.0150	0.008649		4
rs72555385	7:73123473	A/G	STX1A	intron	0.809	0.98896	0.0288	0.7004		3a
rs73138850	7:73128427	A/G	STX1A	intron	0.852	0.96909	0.0196	0.1084		7
rs73362402	7:73123529	T/C	STX1A	intron	0.864	0.99850	0.0208	0.9424		4
rs7776771	7:73128525	A/G	STX1A	intron	0.829	0.99750	0.0116	0.8303		7
rs78791161	7:73121391	A/G	STX1A	intron	0.611	1.05654	0.0552	0.3191		5
rs875342	7:73127098	A/G	STX1A	intron	0.639	1.01217	0.0444	0.7857		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information