STAG1

Basic Information

Gene Symbol	STAG1
Entrez Id	10274
Position	chr3:136055999..136471245
Description	stromal antigen 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10155016	3:136466108	C/G	STAG1	intron	0.983	0.97064	0.0115	0.009683		4
rs10155017	3:136466019	A/G	STAG1	intron	0.987	1.03169	0.0115	0.006508		7
rs1017881	3:136357693	A/G	STAG1	intron	0.986	1.04980	0.0120	0.00004989		7
rs1017882	3:136357705	T/C	STAG1	intron	0.997	1.06695	0.0109	2.922E-9		7
rs10212476	3:136423976	C/G	STAG1	intron	0.952	0.99950	0.0445	0.9915		6
rs10513016	3:136343945	A/G	STAG1	intron	1.010	1.03645	0.0185	0.05316		5
rs1070228	3:136245815	A/G	STAG1	intron	0.992	0.93613	0.0109	1.462E-9		7
rs1070229	3:136246097	A/C	STAG1	intron	0.615	1.03200	0.0283	0.265		7
rs1070230	3:136247748	T/G	STAG1	intron	0.980	1.05485	0.0122	0.00001237		7
rs1070232	3:136248087	T/G	STAG1	intron	0.998	1.05570	0.0122	9.547E-6		6
rs10804640	3:136165695	A/G	STAG1	intron	0.999	0.93576	0.0109	1.031E-9		6
rs10935181	3:136098408	A/G	STAG1	intron	0.997	0.94176	0.0107	2.21E-8		7
rs10935182	3:136137422	A/G	STAG1	intron	0.995	0.93885	0.0108	4.648E-9		6
rs10935183	3:136149139	T/C	STAG1	intron	1.000	0.93660	0.0109	1.754E-9		7
rs10935184	3:136153468	T/C	STAG1	intron	0.999	1.06951	0.0108	4.368E-10		4
rs10935185	3:136290529	C/G	STAG1	intron	0.997	1.07272	0.0108	9.145E-11		7
rs10935186	3:136346206	T/C	STAG1	intron	1.000	1.07186	0.0108	1.341E-10		7
rs111311105	3:136404019	A/G	STAG1	intron	0.992	1.03583	0.0187	0.05986		6
rs111324712	3:136446669	T/C	STAG1	intron	0.748	1.03521	0.0567	0.5417		7
rs111379782	3:136369953	A/T	STAG1	intron	0.851	0.94705	0.0146	0.0002012		7
rs111388247	3:136363825	A/G	STAG1	intron	0.822	1.02061	0.0495	0.6799		5
rs111602733	3:136296925	A/G	STAG1	intron	0.912	0.97756	0.0266	0.3924		4
rs111681309	3:136431005	A/G	STAG1	intron	0.993	1.03490	0.0189	0.06928		5
rs111730376	3:136108619	T/C	STAG1	intron	1.000	1.03759	0.0192	0.05514		6
rs111822807	3:136117226	T/C	STAG1	intron	1.000	1.03283	0.0186	0.08234		6
rs111843797	3:136301097	T/G	STAG1	intron	0.803	0.89342	0.0647	0.08159		3a
rs111919234	3:136466400	A/C	STAG1	intron	1.000	0.96551	0.0185	0.05815		6
rs111942290	3:136207034	A/G	STAG1	intron	0.880	0.96657	0.0189	0.07183		7
rs111949903	3:136422932	A/G	STAG1	intron	0.793	1.06003	0.0340	0.08603		7
rs112006512	3:136308750	T/G	STAG1	intron	1.010	1.03790	0.0186	0.04517		7
rs112169023	3:136111897	C/G	STAG1	intron	0.699	0.95028	0.0447	0.2537		7
rs112172904	3:136080665	A/G	STAG1	intron	1.010	1.03210	0.0186	0.08879		7
rs112177812	3:136339272	T/G	STAG1	intron	0.802	0.89244	0.0647	0.07843		5
rs112402636	3:136143829	A/G	STAG1	intron	1.010	1.03407	0.0186	0.07117		7
rs112511298	3:136129591	A/G	STAG1	intron	1.010	1.03365	0.0186	0.07469		6
rs112907850	3:136292767	T/C	STAG1	intron	1.000	1.03811	0.0185	0.04303		6
rs113217413	3:136236684	T/C	STAG1	intron	0.792	1.09286	0.0646	0.1694		7
rs113317862	3:136120788	A/G	STAG1	intron	1.010	1.03355	0.0186	0.07572		7
rs113335876	3:136450542	T/C	STAG1	intron	0.843	1.05117	0.0351	0.1546		5
rs113498805	3:136176462	A/G	STAG1	intron	0.739	0.92054	0.0556	0.1367		3a
rs113531732	3:136255572	T/C	STAG1	intron	0.720	0.94554	0.0486	0.2499		6
rs113632149	3:136220746	A/G	STAG1	intron	0.990	1.03500	0.0185	0.06272		7
rs113823771	3:136272473	A/G	STAG1	intron	0.910	1.04123	0.0227	0.07514		6
rs113934788	3:136411445	T/C	STAG1	intron	1.010	1.03634	0.0185	0.05364		7
rs113946559	3:136338292	A/G	STAG1	intron	0.882	0.88630	0.0646	0.06183		7
rs114157713	3:136220502	T/C	STAG1	intron	0.979	0.94781	0.0395	0.1745		7
rs114161093	3:136130895	T/C	STAG1	intron	0.989	1.03759	0.0559	0.5091		7
rs114168833	3:136152664	T/C	STAG1	intron	0.795	1.09582	0.0646	0.1568		6
rs114192045	3:136168126	A/G	STAG1	intron	0.883	0.97726	0.0456	0.6149		7
rs114242526	3:136363965	C/G	STAG1	intron	0.994	1.01837	0.0402	0.6507		5
rs114305326	3:136169786	T/C	STAG1	intron	0.986	1.06759	0.0398	0.1005		7
rs114344800	3:136457080	T/C	STAG1	intron	0.734	0.94308	0.0566	0.3001		7
rs114436530	3:136422079	T/C	STAG1	intron	0.884	0.93342	0.0611	0.2594		4
rs114452756	3:136150869	A/G	STAG1	intron	0.789	1.05390	0.0286	0.06617		6
rs114462013	3:136448887	T/C	STAG1	intron	0.798	1.05908	0.0509	0.2594		6
rs1145101	3:136069286	T/C	STAG1	intron	0.993	1.05348	0.0140	0.0002067		4
rs114598930	3:136358320	A/G	STAG1	intron	0.835	0.94327	0.0483	0.2265		5
rs114630541	3:136197210	T/C	STAG1	intron	0.965	0.96793	0.0560	0.5613		7
rs114747734	3:136120878	A/G	STAG1	intron	0.911	0.95964	0.0461	0.3717		7
rs115229902	3:136467631	T/C	STAG1	intron	0.881	0.91147	0.0614	0.1312		7
rs115316129	3:136119697	A/G	STAG1	intron	0.767	0.92747	0.0505	0.1357		7
rs115498639	3:136108213	A/G	STAG1	intron	0.924	1.05295	0.0252	0.04106		6
rs115498810	3:136210173	T/C	STAG1	intron	0.875	0.96618	0.0375	0.36		6
rs115769262	3:136082119	A/G	STAG1	intron	0.907	1.00874	0.0281	0.7571		7
rs115777303	3:136401281	A/T	STAG1	intron	0.962	0.97863	0.0177	0.2215		6
rs115905504	3:136327037	A/G	STAG1	intron	0.737	0.94064	0.0566	0.2795		7
rs116020151	3:136192943	T/C	STAG1	intron	0.771	1.22250	0.0567	0.0003916		5
rs116079103	3:136118876	T/C	STAG1	intron	0.773	0.85899	0.0502	0.002446		6
rs116172169	3:136340042	A/G	STAG1	intron	0.966	1.03458	0.0192	0.07665		6
rs116245010	3:136356311	T/C	STAG1	intron	0.912	0.98679	0.0270	0.6227		6
rs116323751	3:136164401	T/C	STAG1	intron	0.978	0.91512	0.0371	0.01686		7
rs116330348	3:136237959	T/C	STAG1	intron	0.876	0.96822	0.0376	0.3901		6
rs116387571	3:136339949	T/C	STAG1	intron	0.833	1.08383	0.0218	0.0002273		7
rs116636776	3:136383241	A/G	STAG1	intron	0.953	1.05760	0.0384	0.1445		3b
rs11714098	3:136427337	A/G	STAG1	intron	0.964	0.95313	0.0486	0.3237		4
rs11715257	3:136182053	T/C	STAG1	intron	0.997	0.96117	0.0122	0.001137		5
rs11915629	3:136139730	C/G	STAG1	intron	0.991	1.06269	0.0108	1.599E-8		7
rs11919030	3:136348599	A/G	STAG1	intron	0.999	0.93622	0.0109	1.443E-9		6
rs12107125	3:136464612	T/C	STAG1	intron	0.991	0.96618	0.0110	0.001852		7
rs12163529	3:136298879	A/G	STAG1	intron	0.996	0.93277	0.0108	1.353E-10		7
rs12330258	3:136061168	T/C	STAG1	intron	0.982	0.97113	0.0110	0.0079		6
rs12330800	3:136178072	A/G	STAG1	intron	0.972	0.96754	0.0116	0.00435		6
rs12489577	3:136213145	T/C	STAG1	intron	1.000	0.95485	0.0119	0.0001087		6
rs12492510	3:136151631	T/G	STAG1	intron	1.000	0.93622	0.0109	1.34E-9		5
rs12630999	3:136300927	A/G	STAG1	intron	0.998	0.94819	0.0123	0.00001393		5
rs12635723	3:136300732	A/G	STAG1	intron	1.000	1.05506	0.0123	0.00001238		6
rs12637102	3:136211960	A/G	STAG1	intron	0.997	1.04928	0.0125	0.0001233		7
rs12695649	3:136271916	T/C	STAG1	intron	0.998	0.98157	0.0125	0.1371		7
rs13062352	3:136464762	A/G	STAG1	intron	0.998	1.02357	0.0129	0.07116		7
rs13063893	3:136387638	T/C	STAG1	intron	0.964	1.05085	0.0157	0.00163		5
rs13063987	3:136445397	C/G	STAG1	intron	0.993	0.95839	0.0126	0.0007451		6
rs13065626	3:136294757	C/G	STAG1	intron	0.938	0.95113	0.0164	0.002216		7
rs13066401	3:136345819	A/G	STAG1	intron	0.977	1.00120	0.0155	0.9385		7
rs13067764	3:136282585	A/G	STAG1	intron	0.980	0.99820	0.0184	0.9224		7
rs13068119	3:136206369	T/C	STAG1	intron	0.987	0.95285	0.0129	0.0001883		7
rs13069695	3:136291562	T/C	STAG1	intron	0.934	0.95094	0.0170	0.002998		6
rs13070680	3:136404095	T/C	STAG1	intron	0.987	0.95218	0.0130	0.00017		7
rs13071220	3:136314119	T/C	STAG1	intron	0.994	0.97941	0.0126	0.09852		5
rs13072691	3:136425600	T/C	STAG1	intron	0.971	0.94563	0.0170	0.001036		6
rs13072698	3:136222998	T/C	STAG1	intron	0.996	0.99810	0.0185	0.92		7
rs13078721	3:136433796	A/T	STAG1	intron	0.769	1.04571	0.0167	0.007548		6
rs13082184	3:136138467	T/G	STAG1	intron	0.758	0.96860	0.0144	0.02695		6
rs13092193	3:136240366	T/C	STAG1	intron	0.998	0.98039	0.0126	0.1143		7
rs13096466	3:136255483	T/C	STAG1	intron	0.997	1.01969	0.0126	0.1194		7
rs13100192	3:136421291	A/C	STAG1	intron	0.989	1.02614	0.0130	0.04802		7
rs13316214	3:136158221	A/G	STAG1	intron	0.987	0.97961	0.0127	0.1057		6
rs13316240	3:136158285	A/C	STAG1	intron	0.775	0.96300	0.0125	0.002464		5
rs13321721	3:136209550	A/G	STAG1	intron	0.997	0.98098	0.0126	0.1294		6
rs13326151	3:136261744	A/G	STAG1	intron	0.998	1.01765	0.0126	0.1636		6
rs13433688	3:136409171	T/C	STAG1	intron	0.974	1.02051	0.0134	0.1282		7
rs13433980	3:136350801	A/C	STAG1	intron	0.996	1.03479	0.0115	0.002948		1f
rs13434116	3:136353074	C/G	STAG1	intron	0.994	1.01939	0.0126	0.1267		6
rs137950796	3:136183226	T/C	STAG1	intron	0.862	1.02655	0.0441	0.5524		-
rs138225440	3:136250633	A/G	STAG1	intron	0.973	1.04279	0.0288	0.1456		-
rs138431876	3:136091590	T/C	STAG1	intron	0.679	1.08676	0.0482	0.08402		-
rs138545323	3:136340555	A/T	STAG1	intron	0.920	0.95600	0.0471	0.3396		-
rs138571983	3:136148236	T/C	STAG1	intron	0.680	0.92914	0.0467	0.1153		-
rs138586478	3:136090808	T/C	STAG1	intron	0.991	0.98138	0.0225	0.4043		-
rs138628138	3:136126695	A/G	STAG1	intron	0.801	1.00060	0.0329	0.985		-
rs138694926	3:136102130	T/G	STAG1	intron	0.616	0.93174	0.0691	0.3065		-
rs138924615	3:136348952	A/G	STAG1	intron	0.843	1.04687	0.0502	0.3614		-
rs138926056	3:136423796	A/G	STAG1	intron	0.614	1.09922	0.0498	0.05761		-
rs138968983	3:136295599	T/C	STAG1	intron	0.642	0.93379	0.0696	0.3254		-
rs139073443	3:136089734	A/G	STAG1	intron	0.856	0.98778	0.0248	0.6189		-
rs139270227	3:136435148	T/C	STAG1	intron	0.926	0.98108	0.0362	0.5977		-
rs139332609	3:136414793	A/G	STAG1	intron	0.706	1.02020	0.0390	0.6075		-
rs139595171	3:136452005	A/C	STAG1	intron	0.707	0.98442	0.0393	0.6901		-
rs139689491	3:136187366	T/C	STAG1	intron	0.931	1.01725	0.0307	0.5786		-
rs139742671	3:136137549	A/T	STAG1	intron	0.783	1.00260	0.0315	0.9345		-
rs139748314	3:136429342	T/C	STAG1	intron	0.969	1.10495	0.0428	0.01962		-
rs140017560	3:136141711	A/G	STAG1	intron	0.716	0.93829	0.0397	0.1088		-
rs140048840	3:136465679	T/C	STAG1	intron	0.998	1.02368	0.0129	0.06998		-
rs140153629	3:136419481	T/C	STAG1	intron	0.640	0.95916	0.0332	0.2097		-
rs140239349	3:136425592	A/C	STAG1	intron	0.860	1.10153	0.0605	0.1099		-
rs140256132	3:136344888	C/G	STAG1	intron	0.878	0.96841	0.0376	0.3941		-
rs140329089	3:136186021	A/G	STAG1	intron	0.864	1.05496	0.0491	0.2764		-
rs140350752	3:136205094	A/G	STAG1	intron	0.640	1.09232	0.0477	0.06405		-
rs140434213	3:136058466	T/C	STAG1	intron	0.605	0.91594	0.0717	0.2206		-
rs140686568	3:136195042	A/G	STAG1	intron	0.645	1.12919	0.0659	0.06525		-
rs140690491	3:136330243	A/T	STAG1	intron	0.757	1.05043	0.0699	0.4818		-
rs140774039	3:136390872	A/C	STAG1	intron	0.815	1.04227	0.0532	0.4368		-
rs141173920	3:136140912	T/C	STAG1	intron	0.849	1.03780	0.0336	0.2705		-
rs141307235	3:136284307	A/G	STAG1	intron	0.779	0.92100	0.0510	0.1069		-
rs141307752	3:136376580	T/C	STAG1	intron	0.973	1.02624	0.0561	0.6445		-
rs141364970	3:136289402	A/T	STAG1	intron	0.813	0.95916	0.0612	0.4952		-
rs141704377	3:136315060	T/G	STAG1	intron	0.815	0.92895	0.0503	0.143		-
rs141720374	3:136396233	T/C	STAG1	intron	0.814	0.95945	0.0532	0.4364		-
rs141845681	3:136355886	A/G	STAG1	intron	0.784	1.04865	0.0529	0.3692		-
rs141982996	3:136234703	T/C	STAG1	intron	0.813	0.87862	0.0455	0.004428		-
rs142068154	3:136437099	A/G	STAG1	intron	0.715	1.08350	0.0592	0.175		-
rs142503315	3:136086323	A/C	STAG1	intron	0.872	0.96358	0.0375	0.322		-
rs142601645	3:136235605	C/G	STAG1	intron	0.779	0.92395	0.0511	0.1215		-
rs142886516	3:136424037	A/G	STAG1	intron	0.779	1.10340	0.0468	0.0356		-
rs143210631	3:136090793	T/C	STAG1	intron	0.611	1.02061	0.0345	0.555		-
rs143256543	3:136400343	A/T	STAG1	intron	0.704	0.92404	0.0409	0.0536		-
rs143563224	3:136062148	A/T	STAG1	intron	0.640	1.05338	0.0638	0.4153		-
rs143656075	3:136246332	T/G	STAG1	intron	0.823	1.20274	0.0651	0.004566		-
rs144080910	3:136265393	T/C	STAG1	intron	0.944	0.88834	0.0511	0.02061		-
rs144081699	3:136187906	T/C	STAG1	intron	0.647	1.04938	0.0599	0.421		-
rs144407016	3:136332103	T/C	STAG1	intron	0.873	0.97697	0.0371	0.5303		-
rs144532273	3:136092414	C/G	STAG1	intron	0.991	1.02112	0.0244	0.3921		-
rs144787327	3:136217200	A/G	STAG1	intron	0.752	1.11138	0.0575	0.06621		-
rs145172807	3:136442533	T/C	STAG1	intron	0.931	0.96348	0.0126	0.00308		-
rs145335486	3:136259525	A/G	STAG1	intron	0.927	0.95590	0.0406	0.2669		-
rs145505534	3:136190906	T/C	STAG1	intron	0.639	1.08839	0.0477	0.07572		-
rs145511462	3:136085951	T/G	STAG1	intron	0.755	1.09834	0.0562	0.09519		-
rs145691683	3:136401724	T/C	STAG1	intron	0.805	0.87110	0.0512	0.007047		-
rs145712167	3:136447390	T/C	STAG1	intron	0.717	0.88719	0.0627	0.05627		-
rs145804203	3:136152162	A/G	STAG1	intron	0.675	0.92719	0.0450	0.09291		-
rs146430635	3:136188441	A/G	STAG1	intron	0.996	0.97863	0.0126	0.08777		-
rs146686387	3:136223557	T/G	STAG1	intron	0.881	0.91631	0.0604	0.1478		-
rs147049965	3:136392344	T/C	STAG1	intron	0.809	1.05696	0.0603	0.3582		-
rs147072475	3:136435284	A/G	STAG1	intron	0.769	1.06588	0.0450	0.1566		-
rs147497488	3:136145724	C/G	STAG1	intron	0.940	0.92017	0.0602	0.1669		-
rs147736596	3:136357912	A/C	STAG1	intron	0.626	0.94952	0.0628	0.4093		-
rs147775164	3:136282596	T/C	STAG1	intron	0.618	0.91375	0.0496	0.06889		-
rs147930002	3:136358330	A/G	STAG1	intron	0.815	0.98491	0.0482	0.7527		-
rs148034382	3:136092596	T/G	STAG1	intron	0.961	0.98462	0.0135	0.2517		-
rs148084830	3:136242749	A/G	STAG1	intron	0.885	1.02051	0.0456	0.6557		-
rs148170552	3:136419193	T/C	STAG1	intron	0.842	0.96060	0.0438	0.3585		-
rs148415710	3:136414212	C/G	STAG1	intron	0.881	0.91220	0.0614	0.1342		-
rs148469828	3:136244352	T/C	STAG1	intron	0.990	0.97132	0.0114	0.01073		-
rs148486720	3:136347142	T/C	STAG1	intron	0.601	0.93044	0.0523	0.1679		-
rs148726310	3:136259829	A/G	STAG1	intron	0.632	0.90095	0.0488	0.03237		-
rs148844971	3:136386574	C/G	STAG1	intron	0.973	1.02644	0.0561	0.6414		-
rs149083637	3:136063596	T/C	STAG1	intron	0.831	1.00100	0.0415	0.9811		-
rs149584140	3:136316035	T/C	STAG1	intron	0.880	1.01116	0.0422	0.7935		-
rs149586656	3:136427626	C/G	STAG1	intron	0.717	0.88736	0.0627	0.05656		-
rs149859747	3:136409647	A/C	STAG1	intron	0.811	1.04415	0.0530	0.4149		-
rs149987619	3:136420022	T/C	STAG1	intron	0.624	0.90393	0.0494	0.04084		-
rs150127558	3:136182614	T/C	STAG1	intron	0.760	1.02768	0.0130	0.03591		-
rs150450479	3:136426565	T/C	STAG1	intron	0.791	1.07380	0.0485	0.1423		-
rs150461191	3:136233670	T/C	STAG1	intron	0.822	0.83644	0.0650	0.006024		-
rs150619835	3:136195547	T/C	STAG1	intron	0.883	1.02204	0.0456	0.633		-
rs150651064	3:136187101	C/G	STAG1	intron	0.949	1.02881	0.0194	0.1437		-
rs150862536	3:136226259	A/G	STAG1	intron	0.641	1.09406	0.0477	0.05913		-
rs150982686	3:136429672	T/C	STAG1	intron	0.616	1.10528	0.0522	0.05529		-
rs151006381	3:136182038	T/C	STAG1	intron	0.923	1.04436	0.0481	0.3661		-
rs1604793	3:136181070	C/G	STAG1	intron	0.995	1.02092	0.0127	0.1023		6
rs16843941	3:136062150	A/G	STAG1	intron	0.778	1.05770	0.0496	0.2582		7
rs16843978	3:136106435	C/G	STAG1	intron	1.010	0.96676	0.0185	0.0677		7
rs16843991	3:136196028	T/C	STAG1	intron	0.990	0.97132	0.0114	0.01068		7
rs16844056	3:136335157	C/G	STAG1	intron	1.010	1.03780	0.0185	0.04433		5
rs1711161	3:136080537	T/G	STAG1	intron	0.989	0.95171	0.0122	0.00004883		6
rs17200118	3:136062523	A/G	STAG1	intron	0.879	1.04917	0.0346	0.1648		2b
rs17200216	3:136067232	A/C	STAG1	intron	0.998	1.01837	0.0125	0.1462		7
rs17200503	3:136102316	T/C	STAG1	intron	0.791	0.92450	0.0270	0.00369		6
rs17266364	3:136101180	T/C	STAG1	intron	1.000	1.03769	0.0192	0.05412		6
rs17298525	3:136193025	C/G	STAG1	intron	0.996	1.02143	0.0127	0.09436		5
rs17298882	3:136222954	T/G	STAG1	intron	0.911	1.02850	0.0190	0.1389		7
rs17364170	3:136163234	T/C	STAG1	intron	0.770	0.90765	0.0586	0.09822		7
rs17364492	3:136204437	A/C	STAG1	intron	0.998	0.98098	0.0125	0.125		6
rs17365351	3:136340339	T/G	STAG1	intron	1.010	1.03479	0.0185	0.06525		5
rs17466223	3:136398883	C/G	STAG1	intron	0.997	1.03365	0.0185	0.07311		6
rs180688051	3:136283849	A/C	STAG1	intron	0.684	0.99850	0.0235	0.9482		-
rs181057813	3:136168572	T/G	STAG1	intron	0.892	0.89137	0.0630	0.06808		-
rs181557308	3:136214722	A/G	STAG1	intron	0.647	0.89360	0.0469	0.01648		-
rs181682489	3:136376275	A/G	STAG1	intron	0.959	1.12874	0.0526	0.02118		-
rs181756545	3:136181962	A/T	STAG1	intron	0.980	1.13701	0.0500	0.0102		-
rs181805136	3:136241980	T/C	STAG1	intron	0.772	0.85019	0.0626	0.00958		-
rs181982993	3:136403542	T/C	STAG1	intron	0.601	0.97570	0.0604	0.6839		-
rs181984400	3:136241572	A/C	STAG1	intron	0.822	0.83119	0.0651	0.004499		-
rs182001598	3:136235722	T/C	STAG1	intron	0.713	0.98334	0.0398	0.6724		-
rs182185203	3:136172319	C/G	STAG1	intron	0.713	1.03676	0.0476	0.4482		-
rs182754488	3:136405360	A/G	STAG1	intron	0.601	0.97570	0.0604	0.6836		-
rs182785254	3:136332132	A/G	STAG1	intron	0.885	0.95753	0.0505	0.3894		-
rs182800690	3:136245270	T/G	STAG1	intron	0.735	1.06972	0.0668	0.3129		-
rs182818929	3:136091658	T/G	STAG1	intron	0.882	0.96793	0.0492	0.5073		-
rs182854229	3:136242687	A/G	STAG1	intron	0.955	0.88497	0.0526	0.0201		-
rs183116893	3:136179533	A/C	STAG1	intron	0.654	1.04456	0.0520	0.4017		-
rs183125927	3:136217081	T/C	STAG1	intron	0.661	0.96580	0.0236	0.141		-
rs183283025	3:136290171	A/G	STAG1	intron	0.705	0.97844	0.0390	0.5765		-
rs183543557	3:136438499	A/G	STAG1	intron	0.732	0.98314	0.0201	0.3972		-
rs184236146	3:136384660	T/G	STAG1	intron	0.808	1.09374	0.0494	0.06941		-
rs184548526	3:136442808	C/G	STAG1	intron	0.685	1.08828	0.0637	0.1846		-
rs184964698	3:136253846	T/C	STAG1	intron	0.753	1.10794	0.0547	0.06075		-
rs185133193	3:136182609	A/G	STAG1	intron	0.683	0.98955	0.0260	0.6851		-
rs185212790	3:136187233	A/T	STAG1	intron	0.718	0.89270	0.0622	0.06817		-
rs185345606	3:136439397	T/C	STAG1	intron	0.614	1.02030	0.0361	0.5773		-
rs185543918	3:136092487	A/G	STAG1	intron	0.803	1.07058	0.0554	0.2184		-
rs185812679	3:136444453	T/C	STAG1	intron	0.810	1.05749	0.0604	0.3543		-
rs185931403	3:136115554	A/G	STAG1	intron	0.640	0.95945	0.0446	0.3537		-
rs186187342	3:136314538	A/C	STAG1	intron	0.782	0.94933	0.0577	0.3678		-
rs186487003	3:136268355	T/C	STAG1	intron	0.729	0.91092	0.0693	0.1783		-
rs186584221	3:136299665	A/G	STAG1	intron	0.817	1.04498	0.0414	0.2886		-
rs186592503	3:136283861	A/C	STAG1	intron	0.674	0.96715	0.0228	0.1425		-
rs186800644	3:136422446	A/G	STAG1	intron	0.822	0.97941	0.0495	0.6752		-
rs187043030	3:136148525	T/C	STAG1	intron	0.929	0.91284	0.0564	0.1054		-
rs187402809	3:136217073	T/C	STAG1	intron	0.654	1.05012	0.0203	0.01603		-
rs187882238	3:136332548	T/C	STAG1	intron	0.785	1.04844	0.0383	0.2166		-
rs187886370	3:136315762	A/G	STAG1	intron	0.691	0.96812	0.0733	0.6584		-
rs187930718	3:136389864	T/C	STAG1	intron	0.625	1.11986	0.0551	0.04002		-
rs188000813	3:136082895	T/C	STAG1	intron	0.807	1.07283	0.0412	0.08768		-
rs188269799	3:136375457	A/G	STAG1	intron	0.604	0.99830	0.0359	0.9617		-
rs188306027	3:136439624	T/C	STAG1	intron	0.717	1.12693	0.0627	0.05658		-
rs188460966	3:136197850	T/G	STAG1	intron	0.862	0.99710	0.0411	0.943		-
rs188650363	3:136227239	A/G	STAG1	intron	0.868	0.93819	0.0696	0.3592		-
rs188864712	3:136134155	A/T	STAG1	intron	0.954	1.02265	0.0405	0.5805		-
rs188866412	3:136304462	A/T	STAG1	intron	0.623	1.00713	0.0472	0.8799		-
rs189034413	3:136406594	T/C	STAG1	intron	0.625	1.10219	0.0500	0.05139		-
rs189563852	3:136334519	T/C	STAG1	intron	0.900	1.07347	0.0367	0.05366		-
rs189840145	3:136438491	A/G	STAG1	intron	0.740	1.02173	0.0165	0.1921		-
rs190118742	3:136462486	T/C	STAG1	intron	0.821	0.93716	0.0393	0.09888		-
rs190249188	3:136380373	A/T	STAG1	intron	0.663	1.01704	0.0448	0.7053		-
rs190392714	3:136115706	A/G	STAG1	intron	0.639	0.91338	0.0551	0.1002		-
rs191077240	3:136182617	A/C	STAG1	intron	0.613	1.05432	0.0321	0.09929		-
rs191219330	3:136315500	T/C	STAG1	intron	0.959	0.88577	0.0526	0.02104		-
rs191278387	3:136249997	A/C	STAG1	intron	0.955	0.88488	0.0526	0.01996		-
rs191388830	3:136104915	A/C	STAG1	intron	0.693	1.04519	0.0604	0.4638		-
rs191393175	3:136067682	A/T	STAG1	intron	0.808	1.07573	0.0409	0.07437		-
rs191415756	3:136401290	A/T	STAG1	intron	0.723	1.02163	0.0479	0.6558		-
rs191418863	3:136165771	A/T	STAG1	intron	0.883	0.97716	0.0456	0.6127		-
rs191553767	3:136442744	A/G	STAG1	intron	0.785	1.02214	0.0325	0.5016		-
rs191658065	3:136242917	T/C	STAG1	intron	0.865	0.95447	0.0442	0.2909		-
rs191751573	3:136346414	A/T	STAG1	intron	0.959	0.88577	0.0526	0.02097		-
rs191819607	3:136432873	A/G	STAG1	intron	0.788	0.92229	0.0557	0.1464		-
rs192022732	3:136416863	A/G	STAG1	intron	0.844	1.08719	0.0594	0.1593		-
rs192049058	3:136442384	A/C	STAG1	intron	0.989	1.02235	0.0128	0.08485		-
rs192550757	3:136398398	A/G	STAG1	intron	0.723	0.98748	0.0587	0.8303		-
rs1964478	3:136094858	T/C	STAG1	intron	0.656	0.99442	0.0158	0.7229		6
rs1964675	3:136114945	T/C	STAG1	intron	0.991	0.96223	0.0118	0.001099		7
rs2062322	3:136408886	A/G	STAG1	intron	0.773	1.05064	0.0122	0.0000498		5
rs2623099	3:136265134	A/G	STAG1	intron	0.742	0.95552	0.0306	0.137		6
rs2655008	3:136123775	A/T	STAG1	intron	0.998	1.03956	0.0122	0.001421		5
rs2688600	3:136252596	A/C	STAG1	intron	0.997	0.93538	0.0109	9.022E-10		7
rs2688601	3:136252601	A/G	STAG1	intron	0.997	0.93538	0.0109	9.022E-10		7
rs28390205	3:136364850	C/G	STAG1	intron	0.999	0.97687	0.0129	0.06917		4
rs28396702	3:136167381	A/G	STAG1	intron	0.995	1.03076	0.0113	0.007452		7
rs28452147	3:136438354	C/G	STAG1	intron	0.976	0.97687	0.0245	0.3386		6
rs28472992	3:136406708	A/G	STAG1	intron	0.998	0.98098	0.0126	0.1279		6
rs28478252	3:136121600	A/C	STAG1	intron	0.985	1.04019	0.0123	0.001329		7
rs28489907	3:136461544	A/G	STAG1	intron	0.982	0.96676	0.0111	0.002318		6
rs28634226	3:136129882	A/G	STAG1	intron	0.997	1.01888	0.0125	0.1361		7
rs28641809	3:136290489	A/G	STAG1	intron	0.998	1.01898	0.0125	0.1337		7
rs28657043	3:136309706	C/G	STAG1	intron	0.954	0.95619	0.0185	0.01532		6
rs28682370	3:136363064	T/C	STAG1	intron	0.998	0.96657	0.0115	0.00312		7
rs28718456	3:136204006	A/G	STAG1	intron	0.998	0.98049	0.0125	0.1166		7
rs28750366	3:136361055	T/C	STAG1	intron	0.998	0.98059	0.0125	0.119		6
rs2880501	3:136295540	T/C	STAG1	intron	0.685	1.00733	0.0451	0.8713		4
rs28811905	3:136252052	T/C	STAG1	intron	0.997	0.98069	0.0126	0.1196		7
rs28833292	3:136254193	A/G	STAG1	intron	0.774	0.94450	0.0333	0.08595		6
rs28877020	3:136395716	T/G	STAG1	intron	0.998	0.98069	0.0126	0.1219		6
rs28889583	3:136179532	A/C	STAG1	intron	0.934	1.02963	0.0117	0.01263		6
rs33999043	3:136100040	A/G	STAG1	intron	0.988	0.95266	0.0141	0.0005689		4
rs34135127	3:136226498	T/C	STAG1	intron	0.997	0.98196	0.0126	0.1486		7
rs34154714	3:136154860	T/C	STAG1	intron	0.947	1.05570	0.0166	0.00106		7
rs34165586	3:136172419	T/C	STAG1	intron	0.989	1.02922	0.0114	0.01162		7
rs34168675	3:136183106	A/G	STAG1	intron	0.998	0.98039	0.0125	0.1153		6
rs34169052	3:136468000	A/G	STAG1	intron	0.950	0.94791	0.0182	0.003327		4
rs34281413	3:136461860	T/C	STAG1	intron	0.963	1.05633	0.0162	0.0007235		6
rs34282798	3:136143357	C/G	STAG1	intron	0.996	1.02132	0.0126	0.09422		7
rs34324561	3:136101242	T/G	STAG1	intron	0.997	0.98147	0.0126	0.1367		6
rs34379561	3:136183216	C/G	STAG1	intron	0.990	1.02942	0.0114	0.0111		7
rs34421305	3:136418274	T/C	STAG1	intron	0.956	0.99820	0.0184	0.9217		5
rs34438032	3:136337029	A/G	STAG1	intron	0.994	0.93576	0.0109	1.16E-9		5
rs34498968	3:136195130	T/C	STAG1	intron	0.949	0.94847	0.0161	0.001037		6
rs34523567	3:136089309	A/G	STAG1	intron	0.992	0.97103	0.0114	0.009722		6
rs34553037	3:136379413	T/C	STAG1	intron	0.994	0.95810	0.0128	0.0008105		7
rs34602896	3:136346385	A/G	STAG1	intron	0.986	0.95791	0.0126	0.0006509		5
rs34613715	3:136455007	A/T	STAG1	intron	0.922	0.95151	0.0156	0.001461		7
rs34738913	3:136437884	A/T	STAG1	intron	0.968	1.05527	0.0163	0.0009397		7
rs34757183	3:136143668	T/G	STAG1	intron	0.996	1.02143	0.0126	0.09312		6
rs34804893	3:136339970	A/G	STAG1	intron	0.998	1.02388	0.0129	0.06677		6
rs34807246	3:136170901	A/G	STAG1	coding-synon	0.609	0.96899	0.0604	0.6021		7
rs34913797	3:136127570	A/G	STAG1	intron	0.994	1.02000	0.0127	0.1179		7
rs34962604	3:136229990	T/C	STAG1	intron	0.983	0.97346	0.0114	0.0183		5
rs34967300	3:136268818	A/G	STAG1	intron	0.986	0.95304	0.0129	0.0002041		6
rs34992220	3:136468637	T/C	STAG1	intron	0.991	0.96735	0.0111	0.002769		5
rs35100027	3:136467561	A/T	STAG1	intron	0.993	1.02316	0.0130	0.07727		6
rs35159729	3:136468503	A/G	STAG1	intron	0.991	1.04321	0.0126	0.0007973		7
rs35304385	3:136386253	T/C	STAG1	intron	0.998	0.97961	0.0126	0.1002		5
rs35326900	3:136183253	A/G	STAG1	intron	0.995	1.02245	0.0126	0.0787		6
rs35375192	3:136175525	A/G	STAG1	intron	0.990	0.97132	0.0114	0.01074		5
rs35428413	3:136380698	A/T	STAG1	intron	0.998	1.02357	0.0129	0.07135		6
rs35644083	3:136222468	T/C	STAG1	intron	0.989	0.97161	0.0114	0.01168		7
rs35849216	3:136327569	T/C	STAG1	intron	0.947	1.05739	0.0169	0.0009578		7
rs35874192	3:136470004	C/G	STAG1	intron	0.986	1.06855	0.0109	1.161E-9		3a
rs35899944	3:136229057	A/G	STAG1	intron	0.994	1.01949	0.0126	0.1239		6
rs3856637	3:136391195	A/G	STAG1	intron	1.000	0.95877	0.0117	0.0003365		6
rs3931416	3:136260576	T/C	STAG1	intron	1.000	0.96580	0.0183	0.05723		7
rs3932048	3:136258924	C/G	STAG1	intron	0.981	0.97210	0.0116	0.015		7
rs4038578	3:136426822	A/T	STAG1	intron	0.974	0.94035	0.0110	2.228E-8		6
rs4038586	3:136363291	T/C	STAG1	intron	0.998	0.98020	0.0126	0.1112		4
rs4038587	3:136381368	A/C	STAG1	intron	0.999	0.93594	0.0109	1.197E-9		7
rs41537550	3:136349636	C/G	STAG1	intron	0.883	0.90665	0.0610	0.1079		7
rs4336059	3:136408414	A/G	STAG1	intron	0.991	0.97015	0.0114	0.007925		6
rs4402873	3:136404411	T/C	STAG1	intron	0.996	1.03190	0.0113	0.005625		7
rs4408829	3:136404683	T/C	STAG1	intron	0.998	1.06833	0.0109	1.298E-9		7
rs4452981	3:136307767	A/G	STAG1	intron	0.977	1.05369	0.0123	0.00001967		6
rs4456810	3:136402153	T/C	STAG1	intron	0.999	0.95581	0.0120	0.0001599		7
rs4521165	3:136369710	T/C	STAG1	intron	0.999	0.93679	0.0109	1.993E-9		6
rs4630889	3:136278251	T/C	STAG1	intron	0.986	1.07315	0.0109	1.034E-10		5
rs4678269	3:136189865	A/G	STAG1	intron	0.983	0.93763	0.0110	4.958E-9		6
rs4678270	3:136387348	A/G	STAG1	intron	0.979	0.88126	0.0499	0.01131		5
rs4678430	3:136153926	T/C	STAG1	intron	0.916	0.89754	0.0508	0.03336		7
rs4678433	3:136265682	T/C	STAG1	intron	1.000	0.95428	0.0120	0.00009024		3a
rs4678436	3:136317402	T/G	STAG1	intron	0.975	0.93613	0.0111	2.522E-9		6
rs4678437	3:136317665	T/C	STAG1	intron	1.000	0.95897	0.0117	0.0003521		6
rs4678438	3:136344920	A/C	STAG1	intron	1.000	1.04227	0.0117	0.0004111		6
rs480162	3:136068695	A/T	STAG1	intron	0.998	1.06184	0.0107	2.253E-8		6
rs5026242	3:136110468	T/C	STAG1	intron	0.982	1.03045	0.0115	0.009071		5
rs503973	3:136059537	C/G	STAG1	intron	0.994	0.95897	0.0128	0.001106		5
rs517319	3:136066051	A/T	STAG1	intron	0.996	1.06354	0.0110	1.971E-8		7
rs521746	3:136103920	T/C	STAG1	intron	0.992	1.05802	0.0108	1.628E-7		6
rs58636237	3:136249775	C/G	STAG1	intron	0.995	0.96377	0.0186	0.04677		7
rs58641485	3:136181054	A/C	STAG1	intron	1.000	0.97025	0.0182	0.09767		6
rs58994059	3:136246053	T/C	STAG1	intron	0.963	1.01532	0.0234	0.5159		7
rs59616231	3:136353428	T/C	STAG1	intron	1.010	0.96483	0.0185	0.05284		6
rs59696368	3:136374097	T/C	STAG1	intron	1.010	1.03645	0.0185	0.05343		6
rs59931907	3:136365097	T/C	STAG1	intron	0.997	0.96918	0.0113	0.005733		6
rs60014495	3:136237590	T/G	STAG1	intron	1.010	0.96561	0.0186	0.05973		6
rs60270684	3:136176946	T/C	STAG1	intron	1.010	0.96696	0.0186	0.07089		5
rs60291974	3:136283857	A/C	STAG1	intron	0.628	0.97893	0.0173	0.2192		6
rs61789642	3:136109696	T/C	STAG1	intron	0.953	1.05897	0.0165	0.0005283		4
rs61789643	3:136109752	T/G	STAG1	intron	0.953	1.05897	0.0165	0.000529		7
rs61789644	3:136121153	A/G	STAG1	intron	0.929	1.03015	0.0469	0.5276		6
rs61789645	3:136143840	A/C	STAG1	intron	0.975	1.02973	0.0246	0.2335		7
rs61789646	3:136146361	C/G	STAG1	intron	0.975	1.02963	0.0246	0.2346		7
rs61789652	3:136183041	A/G	STAG1	intron	0.984	1.02173	0.0245	0.381		7
rs61790761	3:136277966	T/C	STAG1	intron	0.629	0.97834	0.0266	0.4107		7
rs61790790	3:136315751	A/C	STAG1	intron	0.844	1.05717	0.0242	0.0217		6
rs61790791	3:136324448	T/C	STAG1	intron	0.817	0.94459	0.0253	0.02404		6
rs61790808	3:136443008	A/G	STAG1	intron	0.817	0.96580	0.0132	0.008693		6
rs61790842	3:136470317	A/G	STAG1	intron	0.978	1.02000	0.0247	0.4239		2b
rs6439638	3:136057832	A/C	STAG1	intron	0.990	0.97346	0.0114	0.01848		6
rs6439640	3:136185680	A/G	STAG1	intron	0.985	1.05338	0.0141	0.0002205		7
rs6439642	3:136192807	A/T	STAG1	intron	0.990	1.02953	0.0114	0.01076		5
rs6439646	3:136273563	T/C	STAG1	intron	1.000	1.05654	0.0123	7.209E-6		6
rs6439649	3:136371691	T/G	STAG1	intron	0.994	1.07272	0.0109	9.806E-11		7
rs6439655	3:136466599	A/G	STAG1	intron	0.995	0.94054	0.0109	1.929E-8		6
rs654237	3:136068699	T/C	STAG1	intron	0.998	1.06184	0.0107	2.21E-8		6
rs655720	3:136103267	T/C	STAG1	intron	1.000	0.95734	0.0119	0.000238		7
rs655748	3:136103287	A/G	STAG1	intron	0.990	0.93772	0.0109	4.226E-9		7
rs66470158	3:136317647	A/T	STAG1	intron	1.010	1.03769	0.0186	0.04609		6
rs66471262	3:136353058	A/G	STAG1	intron	1.010	1.03655	0.0185	0.05261		6
rs66494666	3:136179075	A/G	STAG1	intron	1.010	0.96705	0.0186	0.0711		7
rs66637228	3:136351210	A/G	STAG1	intron	1.010	1.03500	0.0185	0.06267		7
rs66637842	3:136166164	T/G	STAG1	intron	0.962	0.97463	0.0184	0.1615		7
rs66691851	3:136154828	T/C	STAG1	intron	0.998	0.93174	0.0108	6.347E-11		7
rs66739346	3:136366574	T/C	STAG1	intron	1.010	0.96435	0.0184	0.04861		7
rs667920	3:136069472	T/G	STAG1	intron	0.997	0.95352	0.0127	0.0001697		5
rs66810260	3:136293057	T/C	STAG1	intron	0.994	1.03056	0.0113	0.007876		7
rs66890203	3:136153545	T/G	STAG1	intron	0.961	0.99970	0.0161	0.9838		3a
rs66902780	3:136284421	A/G	STAG1	intron	1.010	1.03790	0.0186	0.04489		5
rs66973954	3:136214357	A/T	STAG1	intron	1.010	0.96599	0.0186	0.06236		5
rs67082054	3:136190961	A/G	STAG1	intron	1.010	1.03469	0.0185	0.06585		7
rs67113926	3:136287034	T/C	STAG1	intron	0.956	0.99860	0.0185	0.9385		5
rs67145204	3:136328665	C/G	STAG1	intron	0.993	1.02194	0.0129	0.09289		7
rs67230667	3:136174771	T/G	STAG1	intron	1.010	0.96696	0.0186	0.07018		6
rs67231188	3:136384174	A/T	STAG1	intron	0.993	1.03283	0.0184	0.0788		7
rs67236827	3:136351892	T/C	STAG1	intron	1.010	0.96464	0.0185	0.05202		4
rs67281610	3:136259946	A/G	STAG1	intron	1.010	1.03593	0.0186	0.05715		6
rs67303976	3:136257550	T/C	STAG1	intron	1.010	1.03603	0.0186	0.05676		7
rs67305360	3:136214191	T/C	STAG1	intron	1.010	0.96599	0.0186	0.0624		5
rs67382287	3:136380459	T/C	STAG1	intron	0.998	1.02316	0.0129	0.07634		6
rs67525027	3:136063434	T/C	STAG1	intron	1.010	1.03417	0.0185	0.06914		6
rs67621498	3:136236404	T/C	STAG1	intron	1.010	1.03593	0.0186	0.05726		6
rs6763239	3:136379751	A/G	STAG1	intron	0.991	0.96744	0.0116	0.004412		5
rs67663578	3:136223354	T/C	STAG1	intron	1.010	0.96590	0.0186	0.06213		7
rs6766450	3:136173165	A/G	STAG1	intron	0.981	1.02942	0.0114	0.01117		6
rs6770476	3:136073920	T/C	STAG1	intron	0.983	1.02041	0.0119	0.08911		7
rs6773949	3:136241536	A/T	STAG1	intron	0.997	1.01908	0.0125	0.1323		7
rs6774964	3:136275582	A/G	STAG1	intron	0.998	1.01918	0.0125	0.1303		6
rs67794070	3:136236859	C/G	STAG1	intron	1.010	1.03552	0.0186	0.05991		7
rs6779727	3:136137682	T/C	STAG1	intron	0.961	1.05464	0.0140	0.0001426		6
rs6788346	3:136319965	A/G	STAG1	intron	0.996	1.03469	0.0115	0.002981		7
rs67888773	3:136293630	C/G	STAG1	intron	1.010	1.03800	0.0186	0.04437		6
rs6789152	3:136401351	A/G	STAG1	intron	0.978	1.02963	0.0115	0.01095		6
rs6789541	3:136330721	A/G	STAG1	intron	0.976	1.03169	0.0115	0.006486		7
rs6789761	3:136243345	A/G	STAG1	intron	0.980	0.97074	0.0114	0.009236		6
rs67902591	3:136263096	T/C	STAG1	intron	1.010	1.03749	0.0185	0.04633		7
rs6791142	3:136377377	T/C	STAG1	intron	0.999	0.93660	0.0109	1.757E-9		6
rs67923745	3:136461187	A/G	STAG1	intron	1.010	0.96532	0.0185	0.05676		7
rs6794351	3:136292279	T/C	STAG1	intron	0.992	0.95657	0.0120	0.000206		7
rs67949818	3:136212978	A/G	STAG1	intron	0.996	1.02112	0.0127	0.0994		7
rs67963055	3:136087338	T/C	STAG1	intron	1.010	0.96793	0.0185	0.07763		7
rs67971203	3:136138396	T/C	STAG1	intron	0.975	1.03345	0.0185	0.07433		7
rs68018658	3:136391627	T/C	STAG1	intron	1.010	1.03634	0.0185	0.05401		5
rs6805814	3:136466391	T/C	STAG1	intron	1.000	1.03169	0.0174	0.07294		7
rs6806123	3:136305476	C/G	STAG1	intron	0.998	0.98196	0.0126	0.1468		1f
rs6806795	3:136306139	T/C	STAG1	intron	0.991	1.03025	0.0114	0.009116		7
rs6808390	3:136283853	A/C	STAG1	intron	0.655	1.02122	0.0185	0.2576		6
rs684845	3:136101667	A/G	STAG1	intron	0.871	1.04112	0.0153	0.008395		6
rs695983	3:136064547	A/G	STAG1	intron	1.000	0.96156	0.0117	0.0008319		7
rs696517	3:136067655	T/C	STAG1	intron	0.997	1.05993	0.0136	0.00001867		6
rs696520	3:136056861	T/C	STAG1	untranslated-3	1.000	1.06844	0.0108	8.05E-10		7
rs698269	3:136110506	C/G	STAG1	intron	0.995	1.05696	0.0108	2.596E-7		4
rs699165	3:136224697	A/G	STAG1	intron	0.971	1.05580	0.0123	0.00001086		5
rs71310215	3:136318360	A/G	STAG1	intron	0.986	1.02798	0.0131	0.03564		7
rs71336058	3:136184937	T/C	STAG1	intron	0.600	0.91457	0.0683	0.1913		6
rs71336059	3:136198093	T/C	STAG1	intron	0.781	1.02942	0.0158	0.0675		7
rs71336069	3:136351866	C/G	STAG1	intron	0.998	1.01959	0.0125	0.1229		2b
rs72975363	3:136409621	T/C	STAG1	intron	1.010	0.96474	0.0185	0.05232		3a
rs73222299	3:136074404	A/C	STAG1	intron	0.753	1.04938	0.0565	0.3938		6
rs73222301	3:136094304	A/G	STAG1	intron	0.750	0.94120	0.0594	0.3078		6
rs73222302	3:136098085	A/G	STAG1	intron	0.995	1.06162	0.0107	2.671E-8		7
rs73224192	3:136132688	T/C	STAG1	intron	0.774	1.11038	0.0349	0.002672		6
rs73224196	3:136134496	T/C	STAG1	intron	0.772	1.11305	0.0361	0.002961		7
rs73224201	3:136158406	T/C	STAG1	intron	1.010	1.03438	0.0186	0.06933		5
rs73226130	3:136211844	T/C	STAG1	intron	1.010	0.96599	0.0186	0.06252		7
rs73226190	3:136213310	T/C	STAG1	intron	0.999	1.06812	0.0109	1.408E-9		7
rs73228016	3:136259983	T/C	STAG1	intron	0.979	1.00582	0.0187	0.7573		6
rs73228025	3:136274879	T/C	STAG1	intron	1.010	1.03738	0.0186	0.04804		6
rs73228026	3:136276231	T/C	STAG1	intron	0.972	0.95801	0.0224	0.05587		6
rs73228031	3:136284832	A/T	STAG1	intron	0.760	1.11684	0.0351	0.001624		7
rs73228037	3:136293087	A/C	STAG1	intron	0.992	0.96387	0.0187	0.04954		6
rs73228040	3:136301950	T/C	STAG1	intron	1.010	0.96358	0.0186	0.04563		6
rs73228043	3:136319949	T/C	STAG1	intron	0.987	0.93510	0.0109	8.652E-10		7
rs73230004	3:136325425	T/C	STAG1	intron	0.908	0.96329	0.0261	0.1521		5
rs73230010	3:136346617	A/G	STAG1	intron	0.742	0.94866	0.0577	0.3612		7
rs73230012	3:136357619	A/C	STAG1	intron	0.722	0.94895	0.0570	0.3576		7
rs73230015	3:136362223	A/G	STAG1	intron	0.905	1.03314	0.0277	0.2395		5
rs73230016	3:136364282	T/C	STAG1	intron	0.984	0.98886	0.0458	0.807		7
rs73230027	3:136388635	T/C	STAG1	intron	0.737	1.06684	0.0571	0.257		7
rs73230030	3:136395507	A/G	STAG1	intron	0.737	0.93735	0.0571	0.2569		5
rs73230039	3:136405762	A/T	STAG1	intron	0.959	0.95897	0.0222	0.05885		6
rs73230040	3:136405983	T/C	STAG1	intron	0.934	0.95667	0.0237	0.06179		6
rs73230043	3:136407159	T/G	STAG1	intron	0.997	1.01949	0.0126	0.1235		5
rs73230052	3:136441497	C/G	STAG1	intron	0.999	0.96493	0.0187	0.05654		6
rs73230065	3:136467355	T/C	STAG1	intron	1.000	1.03035	0.0174	0.08516		6
rs7427564	3:136274435	A/G	STAG1	intron	0.997	0.93193	0.0108	7.414E-11		7
rs74618430	3:136160522	A/G	STAG1	intron	0.864	1.05496	0.0481	0.2665		7
rs74641205	3:136374804	A/G	STAG1	intron	0.836	1.08145	0.0217	0.0003006		7
rs74648298	3:136252872	T/C	STAG1	intron	0.948	1.02747	0.0195	0.1639		6
rs74827276	3:136135483	T/C	STAG1	intron	0.939	0.98373	0.0198	0.4082		7
rs75258125	3:136360845	A/T	STAG1	intron	0.822	0.97981	0.0495	0.6798		5
rs75268054	3:136154334	C/G	STAG1	intron	0.868	1.00955	0.0398	0.8119		7
rs75269643	3:136225127	A/G	STAG1	intron	0.927	1.12896	0.0459	0.008215		7
rs75444292	3:136182586	T/C	STAG1	intron	0.758	1.05454	0.0135	0.00008387		6
rs75685279	3:136434833	A/C	STAG1	intron	0.998	0.97697	0.0129	0.0703		6
rs75702359	3:136333398	T/C	STAG1	intron	0.887	1.01816	0.0339	0.5942		5
rs7620314	3:136132705	A/G	STAG1	intron	1.000	0.96599	0.0108	0.001419		7
rs7621308	3:136275528	A/G	STAG1	intron	0.995	0.95132	0.0107	2.831E-6		7
rs76223356	3:136248188	T/C	STAG1	intron	0.983	1.03365	0.0472	0.4838		7
rs76270275	3:136074576	A/C	STAG1	intron	0.831	1.00070	0.0415	0.9875		7
rs7636806	3:136247247	A/T	STAG1	intron	1.000	1.03800	0.0187	0.04638		6
rs7644471	3:136284561	T/C	STAG1	intron	0.991	0.97103	0.0114	0.009967		7
rs76578737	3:136350891	A/G	STAG1	intron	0.836	0.92422	0.0217	0.0002762		5
rs76790147	3:136096816	C/G	STAG1	intron	0.990	0.96831	0.0470	0.4941		5
rs76921464	3:136400501	T/C	STAG1	intron	0.809	0.95523	0.0287	0.1102		7
rs76946962	3:136382163	A/C	STAG1	intron	0.930	1.02973	0.0271	0.2808		6
rs76953609	3:136414633	T/C	STAG1	intron	0.872	0.97619	0.0196	0.2201		7
rs77145930	3:136277501	T/G	STAG1	intron	0.887	1.02593	0.0192	0.1817		7
rs77217092	3:136380781	T/C	STAG1	intron	0.969	1.01572	0.0176	0.3759		7
rs77442224	3:136308138	T/C	STAG1	intron	0.988	1.01867	0.0126	0.14		6
rs77513004	3:136271951	T/C	STAG1	intron	0.885	0.98364	0.0338	0.6266		6
rs77730841	3:136461888	A/G	STAG1	intron	0.926	1.01949	0.0362	0.5943		7
rs77993372	3:136424372	T/G	STAG1	intron	0.751	1.11505	0.0576	0.05861		7
rs78287596	3:136197259	A/C	STAG1	intron	0.882	1.01674	0.0339	0.6238		6
rs78454357	3:136394139	T/C	STAG1	intron	0.808	0.99581	0.0436	0.9237		5
rs78681909	3:136248175	A/G	STAG1	intron	0.791	0.95562	0.0312	0.1456		7
rs78682139	3:136197496	T/C	STAG1	intron	0.924	1.01005	0.0366	0.7845		7
rs78727643	3:136358662	T/C	STAG1	intron	0.850	1.05633	0.0357	0.1245		6
rs78916444	3:136353531	T/C	STAG1	intron	0.900	1.07853	0.0348	0.02991		6
rs78970728	3:136276256	T/C	STAG1	intron	0.886	0.98324	0.0338	0.6167		6
rs79031967	3:136142777	A/C	STAG1	intron	0.701	0.92979	0.0467	0.119		7
rs79303780	3:136260398	A/T	STAG1	intron	0.870	0.98295	0.0149	0.2488		7
rs79708646	3:136334030	A/C	STAG1	intron	0.818	1.02480	0.0485	0.614		6
rs80071199	3:136162056	T/C	STAG1	intron	0.825	0.98699	0.0289	0.6505		5
rs80209944	3:136227731	A/C	STAG1	intron	0.608	1.03448	0.0589	0.5653		5
rs80338366	3:136433196	T/G	STAG1	intron	0.963	1.02439	0.0191	0.2078		6
rs833752	3:136255169	A/G	STAG1	intron	1.000	1.05622	0.0123	8.189E-6		2b
rs833861	3:136231067	A/T	STAG1	intron	0.994	0.93941	0.0108	6.761E-9		7
rs834304	3:136111658	T/G	STAG1	intron	0.999	0.94007	0.0108	1.15E-8		5
rs834305	3:136119354	T/C	STAG1	intron	0.992	0.94045	0.0109	2.053E-8		7
rs864437	3:136119909	C/G	STAG1	intron	0.990	0.93932	0.0110	1.12E-8		6
rs866758	3:136117870	C/G	STAG1	intron	0.994	0.93951	0.0110	1.199E-8		7
rs900048	3:136218930	T/C	STAG1	intron	0.990	0.95190	0.0118	0.00003067		7
rs923001	3:136378415	T/C	STAG1	intron	1.010	0.96464	0.0185	0.05192		4
rs9289509	3:136087494	T/C	STAG1	intron	0.983	1.00461	0.0461	0.9201		6
rs9289511	3:136262364	T/C	STAG1	intron	0.988	0.97697	0.0226	0.301		4
rs9289513	3:136451746	T/G	STAG1	intron	0.988	1.02439	0.0128	0.06115		6
rs940174	3:136309710	T/C	STAG1	intron	0.994	1.07326	0.0108	7.021E-11		7
rs9714347	3:136188837	T/C	STAG1	intron	0.996	1.06737	0.0109	2.138E-9		7
rs9757777	3:136188708	C/G	STAG1	intron	0.997	1.04613	0.0119	0.0001607		6
rs9759024	3:136188610	T/C	STAG1	intron	0.978	1.04519	0.0120	0.000226		7
rs9809184	3:136159076	T/C	STAG1	intron	0.977	0.97287	0.0115	0.01697		7
rs9809267	3:136429904	A/T	STAG1	intron	0.915	1.01532	0.0127	0.2332		6
rs9809269	3:136429906	A/T	STAG1	intron	0.966	1.01268	0.0134	0.3444		6
rs9809373	3:136189335	T/C	STAG1	intron	0.976	1.04959	0.0119	0.0000503		6
rs9809427	3:136108192	T/C	STAG1	intron	0.977	1.03025	0.0246	0.2248		7
rs9809602	3:136233470	T/C	STAG1	intron	0.985	0.98649	0.0459	0.7674		7
rs9810051	3:136108603	A/C	STAG1	intron	0.980	1.02163	0.0129	0.09681		6
rs9810789	3:136186184	A/G	STAG1	intron	0.962	0.98472	0.0132	0.2444		6
rs9811261	3:136098559	A/C	STAG1	intron	0.994	1.03045	0.0114	0.008497		6
rs9811416	3:136251582	A/G	STAG1	intron	0.974	0.98482	0.0240	0.5241		7
rs9811490	3:136089584	T/C	STAG1	intron	0.990	0.97249	0.0114	0.01485		7
rs9812319	3:136238860	T/C	STAG1	intron	0.993	1.03138	0.0113	0.006446		6
rs9812579	3:136151250	A/G	STAG1	intron	0.995	0.97981	0.0127	0.1072		7
rs9813115	3:136063707	T/C	STAG1	intron	0.997	1.01786	0.0126	0.1602		6
rs9813590	3:136436323	T/C	STAG1	intron	0.984	0.96764	0.0111	0.003073		6
rs9813596	3:136436334	T/C	STAG1	intron	0.988	0.96512	0.0111	0.001342		6
rs9813691	3:136260722	T/G	STAG1	intron	0.998	0.98157	0.0126	0.1384		7
rs9817529	3:136452961	A/C	STAG1	intron	0.826	1.03283	0.0213	0.1297		6
rs9818056	3:136210074	T/C	STAG1	intron	0.998	1.01928	0.0125	0.1287		7
rs9818372	3:136388453	A/T	STAG1	intron	0.954	0.96880	0.0116	0.006356		7
rs9818536	3:136115295	T/C	STAG1	intron	0.970	1.02153	0.0129	0.09851		6
rs9819496	3:136139878	A/G	STAG1	intron	0.991	1.02912	0.0114	0.01186		7
rs9820485	3:136228566	A/C	STAG1	intron	0.988	0.97932	0.0226	0.3547		6
rs9820513	3:136346292	A/G	STAG1	intron	0.993	1.03334	0.0116	0.004646		5
rs9820621	3:136110513	A/G	STAG1	intron	0.980	1.02112	0.0129	0.1043		4
rs9820717	3:136346613	A/C	STAG1	intron	0.999	1.02265	0.0129	0.0826		7
rs9821478	3:136310985	C/G	STAG1	intron	0.986	0.97609	0.0226	0.2829		6
rs9823373	3:136167027	T/C	STAG1	intron	0.995	0.97893	0.0126	0.09259		7
rs9825700	3:136435162	A/G	STAG1	intron	0.975	0.93594	0.0110	1.581E-9		7
rs9826198	3:136132709	T/C	STAG1	intron	0.935	0.96715	0.0471	0.478		7
rs9826420	3:136317506	C/G	STAG1	intron	0.936	1.00040	0.0397	0.9924		6
rs9826828	3:136402060	A/G	STAG1	intron	0.984	0.98334	0.0458	0.7133		5
rs9828068	3:136342702	C/G	STAG1	intron	0.993	1.03345	0.0116	0.004493		6
rs9828088	3:136247790	T/C	STAG1	intron	0.997	1.01918	0.0125	0.1298		6
rs9830653	3:136443219	T/C	STAG1	intron	0.735	1.02092	0.0141	0.1441		7
rs9831321	3:136142592	A/G	STAG1	intron	0.996	1.02984	0.0113	0.009464		6
rs9832056	3:136095191	A/T	STAG1	intron	0.930	0.97619	0.0203	0.2339		7
rs9832556	3:136102536	A/G	STAG1	intron	0.955	1.03324	0.0243	0.1798		7
rs9832572	3:136334228	T/C	STAG1	intron	0.997	0.96938	0.0113	0.006013		7
rs9832813	3:136065565	A/G	STAG1	intron	0.996	0.97912	0.0116	0.06864		6
rs9833207	3:136415217	T/C	STAG1	intron	0.979	0.98089	0.0245	0.4304		5
rs9834631	3:136296599	A/T	STAG1	intron	0.991	0.97083	0.0114	0.009505		6
rs9835523	3:136142933	C/G	STAG1	intron	0.975	1.02984	0.0246	0.2321		6
rs9836231	3:136414321	T/C	STAG1	intron	0.991	1.06695	0.0109	2.904E-9		5
rs9837158	3:136073163	T/C	STAG1	intron	0.998	1.01857	0.0126	0.1436		7
rs9839137	3:136304262	T/C	STAG1	intron	0.998	1.01918	0.0125	0.1307		7
rs9839574	3:136376035	T/C	STAG1	intron	0.886	0.97210	0.0127	0.02622		6
rs9841529	3:136137283	A/C	STAG1	intron	0.997	0.98118	0.0125	0.1301		6
rs9845396	3:136150451	C/G	STAG1	intron	0.975	0.97161	0.0246	0.241		7
rs9845762	3:136356464	T/C	STAG1	intron	1.000	0.95945	0.0117	0.0004075		1f
rs9845950	3:136356598	T/C	STAG1	intron	0.998	1.03417	0.0115	0.003493		5
rs9847171	3:136217075	T/C	STAG1	intron	0.762	1.02696	0.0121	0.02783		6
rs9847427	3:136351550	A/C	STAG1	intron	0.999	1.02245	0.0129	0.08633		5
rs9848623	3:136186133	T/G	STAG1	intron	0.845	1.03479	0.0137	0.01257		6
rs9849696	3:136186756	C/G	STAG1	intron	0.990	1.02173	0.0225	0.3407		6
rs9850383	3:136181443	C/G	STAG1	intron	0.996	0.97045	0.0113	0.008204		7
rs9850527	3:136334396	A/G	STAG1	intron	0.665	1.00431	0.0262	0.8701		7
rs9850584	3:136142317	T/C	STAG1	intron	0.877	0.95142	0.0202	0.01358		6
rs9851986	3:136109114	A/G	STAG1	intron	0.972	0.97317	0.0245	0.2676		7
rs9854084	3:136194743	A/T	STAG1	intron	1.000	1.05686	0.0122	6.253E-6		7
rs9854197	3:136164666	A/T	STAG1	intron	0.935	0.97103	0.0471	0.5326		6
rs9854328	3:136069720	A/G	STAG1	intron	0.995	0.97113	0.0110	0.007442		5
rs9857405	3:136376144	A/G	STAG1	intron	0.858	1.15073	0.0572	0.0141		7
rs9857833	3:136404467	T/C	STAG1	intron	0.998	0.98020	0.0126	0.1106		7
rs9857966	3:136279390	T/C	STAG1	intron	0.998	0.98098	0.0126	0.1258		6
rs9858105	3:136219264	T/C	STAG1	intron	0.982	1.01379	0.0459	0.7657		6
rs9858457	3:136249577	T/C	STAG1	intron	0.989	0.97045	0.0114	0.00874		7
rs9858800	3:136340901	A/T	STAG1	intron	0.937	0.94280	0.0206	0.004196		6
rs9860801	3:136088038	A/G	STAG1	coding-synon	0.996	1.02891	0.0113	0.01203		7
rs9861150	3:136183320	T/G	STAG1	intron	0.982	0.95983	0.0133	0.001997		6
rs9864407	3:136159128	T/C	STAG1	intron	0.915	1.01969	0.0484	0.6871		7
rs9866535	3:136184355	A/G	STAG1	intron	0.990	1.02953	0.0114	0.01081		5
rs9867368	3:136147771	A/G	STAG1	intron	0.967	1.05686	0.0137	0.00005095		7
rs9868096	3:136142316	A/T	STAG1	intron	0.877	0.95142	0.0202	0.01358		6
rs9868120	3:136165076	A/C	STAG1	intron	0.990	1.03004	0.0114	0.009495		7
rs9869361	3:136373016	A/T	STAG1	intron	0.993	0.96783	0.0116	0.004696		7
rs9869630	3:136248019	A/C	STAG1	intron	0.997	0.98089	0.0125	0.1234		7
rs9869720	3:136150995	T/G	STAG1	intron	0.975	0.97132	0.0246	0.2364		7
rs9869957	3:136395947	A/G	STAG1	intron	0.993	1.03303	0.0116	0.004947		5
rs9870825	3:136065720	A/C	STAG1	intron	0.997	1.01755	0.0126	0.1663		7
rs9871160	3:136452728	T/C	STAG1	intron	0.980	0.97599	0.0154	0.1147		6
rs9875770	3:136432324	T/C	STAG1	intron	0.996	1.01939	0.0126	0.1259		7
rs9876771	3:136384912	A/G	STAG1	intron	0.958	0.97103	0.0115	0.01074		6
rs9877786	3:136385519	A/G	STAG1	intron	0.961	0.96851	0.0117	0.006292		6
rs9878078	3:136237573	T/C	STAG1	intron	0.997	1.01939	0.0126	0.1266		7
rs9878871	3:136197238	T/C	STAG1	intron	0.862	1.05707	0.0263	0.03473		6
rs9879787	3:136255557	A/C	STAG1	intron	0.933	0.96522	0.0248	0.1538		6
rs9880099	3:136255776	A/G	STAG1	intron	0.985	1.01288	0.0458	0.7793		6
rs9880211	3:136107549	A/G	STAG1	intron	0.998	1.01908	0.0126	0.1331		7
rs9881078	3:136456191	A/G	STAG1	intron	0.995	0.96638	0.0115	0.002884		7
rs9881831	3:136389718	T/C	STAG1	intron	0.998	0.97795	0.0129	0.0843		5
rs9883189	3:136289466	T/C	STAG1	intron	0.999	0.98147	0.0126	0.1373		5
rs9883916	3:136208788	T/C	STAG1	intron	0.988	0.95199	0.0129	0.0001399		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18511947	GWAS	359 cases; 718 controls
Reference	Study type	Sample size

eQTL Information