SOX2-OT

Basic Information

Gene Symbol	SOX2-OT
Entrez Id	347689
Position	chr3:180774468..181460016
Description	SOX2 overlapping transcript
Gene type	ncRNA

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10212364	3:181342108	T/G	SOX2-OT	intron	0.994	1.02716	0.0142	0.05975		3a
rs10470351	3:181106042	A/G	SOX2-OT	intron	0.990	1.07423	0.0158	5.485E-6		6
rs10470352	3:181422197	A/G	SOX2-OT	intron	0.681	1.04102	0.0316	0.2029		5
rs10513779	3:181254051	T/C	SOX2-OT	intron	0.957	1.00150	0.0119	0.9016		6
rs10804885	3:180928466	T/C	SOX2-OT	intron	0.986	1.08546	0.0135	1.369E-9		5
rs10937055	3:181073789	T/C	SOX2-OT	intron	0.982	1.11171	0.0316	0.000787		7
rs10937056	3:181115627	A/C	SOX2-OT	intron	0.986	0.89351	0.0323	0.0004921		5
rs10937058	3:181220743	T/C	SOX2-OT	intron	0.922	1.02963	0.0110	0.007847		6
rs10937059	3:181235282	A/G	SOX2-OT	intron	0.950	1.01238	0.0115	0.2853		7
rs10937060	3:181257196	T/C	SOX2-OT	intron	0.772	0.96377	0.0141	0.008997		7
rs10937061	3:181257270	T/C	SOX2-OT	intron	0.764	0.97103	0.0122	0.01571		6
rs10937062	3:181301097	T/C	SOX2-OT	intron	0.973	1.00391	0.0109	0.7197		6
rs10937063	3:181301161	A/G	SOX2-OT	intron	0.760	0.99233	0.0182	0.6705		6
rs10937065	3:181394551	A/T	SOX2-OT	intron	0.894	0.96165	0.0149	0.008556		7
rs111288102	3:180832034	A/G	SOX2-OT	intron	0.916	0.96996	0.0583	0.6006		7
rs111390150	3:180888796	A/G	SOX2-OT	intron	0.978	1.04352	0.0594	0.4735		6
rs111469643	3:181369676	A/G	SOX2-OT	intron	0.894	1.02480	0.0439	0.5768		7
rs111568956	3:181107830	A/G	SOX2-OT	intron	0.917	1.04498	0.0122	0.000317		7
rs111637271	3:181322701	T/C	SOX2-OT	intron	0.896	0.97502	0.0170	0.136		6
rs111703430	3:180905713	A/G	SOX2-OT	intron	0.979	1.04394	0.0593	0.4689		5
rs111756931	3:181246087	A/G	SOX2-OT	intron	0.877	0.98669	0.0387	0.7298		7
rs111814399	3:181195316	A/G	SOX2-OT	intron	0.832	0.89387	0.0323	0.0005094		7
rs111877175	3:181455778	A/G	SOX2-OT	intron	0.626	1.05770	0.0542	0.3008		6
rs111890475	3:181208601	T/C	SOX2-OT	intron	0.824	0.99651	0.0309	0.9099		6
rs112020211	3:181083906	T/G	SOX2-OT	intron	0.632	0.97775	0.0452	0.6178		6
rs112064863	3:180895394	T/C	SOX2-OT	intron	0.979	1.04352	0.0594	0.4732		5
rs112090068	3:180876452	A/T	SOX2-OT	intron	0.724	0.90466	0.0412	0.01497		6
rs112181960	3:181456030	A/G	SOX2-OT	intron	0.633	1.07595	0.0593	0.2165		7
rs112294254	3:181125156	A/G	SOX2-OT	intron	0.992	0.93137	0.0158	6.993E-6		7
rs112459557	3:180972716	A/G	SOX2-OT	intron	0.622	0.81775	0.0662	0.002357		7
rs112552103	3:181455513	C/G	SOX2-OT	intron	0.632	1.06364	0.0544	0.2565		7
rs112552665	3:181456472	A/T	SOX2-OT	intron	0.634	0.92376	0.0591	0.1797		7
rs112679450	3:181451907	A/G	SOX2-OT	intron	0.630	0.95801	0.0364	0.2384		7
rs112727079	3:181455974	A/C	SOX2-OT	intron	0.632	0.94488	0.0543	0.2966		6
rs112937807	3:180772801	T/C	SOX2-OT	near-gene-5	0.616	1.12446	0.0644	0.06848		7
rs113011054	3:180889735	A/T	SOX2-OT	intron	0.977	1.04279	0.0593	0.4796		6
rs113204823	3:181454786	T/G	SOX2-OT	intron	0.629	1.06024	0.0546	0.2842		7
rs113277715	3:181319640	A/G	SOX2-OT	intron	0.897	1.02562	0.0170	0.1358		7
rs113280545	3:181238470	A/G	SOX2-OT	intron	0.877	1.02409	0.0308	0.4392		7
rs113298719	3:181445426	C/G	SOX2-OT	intron	0.636	1.02727	0.0450	0.5492		5
rs113335474	3:180930730	A/G	SOX2-OT	intron	0.801	1.01796	0.0489	0.7152		5
rs113380300	3:181218576	A/G	SOX2-OT	intron	0.889	0.98975	0.0382	0.7869		7
rs113388712	3:181319690	T/C	SOX2-OT	intron	0.897	0.97482	0.0170	0.1333		6
rs113452861	3:181233931	T/C	SOX2-OT	intron	0.888	0.98462	0.0384	0.6865		6
rs113586383	3:181099920	A/C	SOX2-OT	intron	0.666	1.14614	0.0419	0.001124		7
rs113610340	3:181069461	A/G	SOX2-OT	intron	0.686	0.88941	0.0398	0.003243		6
rs113690129	3:181322751	A/G	SOX2-OT	intron	0.899	1.01979	0.0202	0.3314		6
rs113773753	3:181205369	T/C	SOX2-OT	intron	0.878	0.97239	0.0549	0.6095		7
rs114095960	3:180815271	A/G	SOX2-OT	intron	0.750	0.95839	0.0486	0.3824		7
rs114106048	3:180973209	A/G	SOX2-OT	intron	0.835	0.89583	0.0428	0.01013		7
rs114327931	3:181124842	T/C	SOX2-OT	intron	0.852	0.95456	0.0122	0.0001395		6
rs114534079	3:181216627	A/C	SOX2-OT	intron	0.892	0.99940	0.0488	0.9908		6
rs114573557	3:180906919	A/G	SOX2-OT	intron	0.929	1.09626	0.0481	0.05591		7
rs114600294	3:181419367	C/G	SOX2-OT	intron	0.673	0.95313	0.0168	0.004237		5
rs114602242	3:181195667	A/G	SOX2-OT	intron	0.951	0.97287	0.0502	0.5846		6
rs114608506	3:181297048	T/G	SOX2-OT	intron	0.810	0.95447	0.0401	0.2453		7
rs114655647	3:180893020	A/G	SOX2-OT	intron,ncRNA	0.743	1.01684	0.0482	0.729		7
rs114722038	3:181362999	T/C	SOX2-OT	intron	0.914	0.98462	0.0438	0.7236		6
rs114740285	3:181287685	A/G	SOX2-OT	intron	0.859	1.01025	0.0576	0.8588		7
rs114910465	3:181319939	A/G	SOX2-OT	intron	0.913	0.96464	0.0154	0.01959		7
rs114950692	3:181081914	C/G	SOX2-OT	intron	0.759	0.92589	0.0469	0.1008		7
rs115003245	3:181375424	A/G	SOX2-OT	intron	0.867	1.02521	0.0447	0.5768		6
rs115160830	3:180912908	T/C	SOX2-OT	intron	0.955	1.04060	0.0326	0.2219		6
rs115257850	3:181451461	A/C	SOX2-OT	intron	0.619	0.93445	0.0556	0.2221		7
rs115296518	3:181030654	A/G	SOX2-OT	intron	0.968	1.01491	0.0207	0.4743		7
rs115484172	3:180848038	A/C	SOX2-OT	intron	0.783	0.94819	0.0479	0.2661		7
rs115513892	3:181082616	A/T	SOX2-OT	intron	0.618	1.10340	0.0623	0.1144		7
rs115550387	3:181254064	T/C	SOX2-OT	intron	0.780	1.00884	0.0229	0.6986		7
rs115735664	3:180840227	A/G	SOX2-OT	intron	0.932	1.04467	0.0493	0.3755		7
rs115802579	3:181064781	T/G	SOX2-OT	intron	0.971	1.01369	0.0283	0.6301		6
rs115811468	3:181137863	C/G	SOX2-OT	intron	0.921	0.90105	0.0369	0.004715		7
rs115857901	3:180978540	A/G	SOX2-OT	intron	0.832	0.92663	0.0444	0.08581		7
rs1158707	3:181221339	A/G	SOX2-OT	intron	0.922	0.97113	0.0110	0.007699		7
rs115882571	3:181349040	A/C	SOX2-OT	intron	0.921	1.01298	0.0437	0.7674		5
rs115907192	3:180801564	C/G	SOX2-OT	intron	0.807	1.06695	0.0508	0.2022		7
rs115912558	3:180843831	T/C	SOX2-OT	intron	0.724	1.10927	0.0479	0.03029		6
rs115978012	3:180792285	A/T	SOX2-OT	intron	0.939	0.92533	0.0443	0.07944		6
rs116046531	3:181003830	T/C	SOX2-OT	intron	0.922	1.03365	0.0324	0.3074		7
rs116126097	3:181403356	A/G	SOX2-OT	intron	0.707	1.05253	0.0311	0.09985		6
rs116150521	3:180872220	T/C	SOX2-OT	intron	0.605	1.10374	0.0717	0.1686		6
rs116159306	3:181355299	A/G	SOX2-OT	intron	0.919	1.01349	0.0437	0.7589		5
rs116206759	3:180786499	A/G	SOX2-OT	intron	0.727	0.90547	0.0587	0.09052		7
rs116212148	3:181233686	A/G	SOX2-OT	intron	0.848	0.99920	0.0154	0.9585		6
rs116281562	3:181329833	A/G	SOX2-OT	intron	0.665	0.97414	0.0468	0.5757		5
rs116365425	3:181089744	A/G	SOX2-OT	intron	0.988	0.89324	0.0323	0.0004677		7
rs116369490	3:181273107	A/G	SOX2-OT	intron	0.887	0.98030	0.0571	0.727		6
rs116460207	3:181195140	A/C	SOX2-OT	intron	0.644	0.99880	0.0517	0.9813		6
rs116556878	3:181348250	A/G	SOX2-OT	intron	0.795	0.98857	0.0359	0.749		6
rs116558282	3:181357381	T/G	SOX2-OT	intron	0.903	1.02778	0.0434	0.5277		6
rs116709564	3:180934649	T/C	SOX2-OT	intron	0.680	1.02706	0.0616	0.6642		6
rs116732150	3:180891130	T/C	SOX2-OT	intron,near-gene-5	0.951	0.98787	0.0264	0.6436		7
rs116770249	3:180882599	A/C	SOX2-OT	intron	0.659	1.03676	0.0297	0.2243		7
rs116777814	3:181273352	T/C	SOX2-OT	intron	0.886	0.98679	0.0570	0.8152		6
rs116796013	3:180811583	A/C	SOX2-OT	intron	0.929	1.00230	0.0281	0.9361		7
rs116829933	3:181046113	A/G	SOX2-OT	intron	0.646	1.01806	0.0583	0.759		6
rs11706935	3:181213827	A/G	SOX2-OT	intron	0.998	0.94952	0.0217	0.0167		6
rs11708198	3:180857105	A/T	SOX2-OT	intron	1.000	0.92339	0.0134	2.921E-9		7
rs11711948	3:181188505	A/G	SOX2-OT	intron	0.990	1.07853	0.0143	1.189E-7		7
rs11712595	3:181192127	A/T	SOX2-OT	intron	0.959	0.89781	0.0327	0.0009647		6
rs11714290	3:180853974	A/G	SOX2-OT	intron	0.966	1.05138	0.0240	0.0367		6
rs11714332	3:180876865	T/C	SOX2-OT	intron	0.988	0.92339	0.0136	4.73E-9		7
rs11716918	3:180904082	A/C	SOX2-OT	intron	0.991	0.92321	0.0135	3.243E-9		6
rs11719026	3:181240259	A/G	SOX2-OT	intron	0.942	0.94791	0.0269	0.04725		6
rs11914416	3:181235576	T/C	SOX2-OT	intron	0.965	1.05274	0.0223	0.02112		6
rs11916418	3:181003722	A/T	SOX2-OT	intron	0.986	0.92210	0.0479	0.09066		6
rs11916545	3:181237378	T/C	SOX2-OT	intron	0.949	1.01227	0.0115	0.2902		7
rs11917886	3:181256027	A/T	SOX2-OT	intron	0.813	0.96715	0.0285	0.24		5
rs11917999	3:181256247	A/G	SOX2-OT	intron	0.806	0.96764	0.0285	0.2483		5
rs11919630	3:181009688	A/G	SOX2-OT	intron	0.977	1.07832	0.0479	0.1156		7
rs11920810	3:181196948	T/C	SOX2-OT	intron	0.988	1.06641	0.0155	0.00003369		6
rs11921361	3:181412347	C/G	SOX2-OT	intron	0.935	0.97453	0.0160	0.1055		7
rs11922572	3:181008726	A/T	SOX2-OT	intron	0.977	1.07832	0.0479	0.1154		7
rs11923447	3:181400102	T/G	SOX2-OT	intron	0.697	0.94734	0.0316	0.08681		6
rs11924735	3:181380708	T/C	SOX2-OT	intron	0.913	1.03894	0.0148	0.009801		7
rs11924871	3:181255836	A/G	SOX2-OT	intron	0.909	0.99920	0.0116	0.9433		4
rs11926078	3:180980531	T/G	SOX2-OT	intron	0.992	1.08383	0.0478	0.09174		7
rs11927844	3:181383366	T/C	SOX2-OT	intron	0.912	1.03811	0.0148	0.01123		7
rs12054399	3:181455466	T/C	SOX2-OT	intron	0.813	0.95686	0.0205	0.03165		7
rs12152501	3:180881223	T/C	SOX2-OT	intron	0.977	0.92543	0.0135	1.026E-8		7
rs12185930	3:181061700	T/C	SOX2-OT	intron	0.995	1.02071	0.0114	0.07065		7
rs12485391	3:181205593	A/C	SOX2-OT	intron	0.979	0.93286	0.0170	0.00004218		5
rs12487748	3:181424232	A/T	SOX2-OT	intron	0.897	1.02675	0.0164	0.1076		5
rs12491867	3:181448558	A/G	SOX2-OT	intron	0.860	1.03396	0.0205	0.1037		5
rs12492148	3:181008608	T/C	SOX2-OT	intron	0.918	1.10043	0.0388	0.01368		3a
rs12496378	3:181423602	C/G	SOX2-OT	intron	0.615	0.98462	0.0182	0.3946		5
rs12497008	3:181283743	A/G	SOX2-OT	intron	0.927	1.01379	0.0110	0.2132		7
rs12497248	3:181424415	C/G	SOX2-OT	intron	0.908	0.97453	0.0163	0.1123		5
rs12497364	3:180870202	A/G	SOX2-OT	intron	0.723	0.99263	0.0134	0.5823		6
rs12629463	3:180917316	A/G	SOX2-OT	intron	0.876	1.02737	0.0118	0.02224		7
rs12629507	3:180880563	T/C	SOX2-OT	intron	0.995	1.08340	0.0135	2.711E-9		7
rs12629509	3:180880582	T/C	SOX2-OT	intron	0.995	1.08340	0.0135	2.693E-9		7
rs12630517	3:181061481	A/G	SOX2-OT	intron	0.984	0.89101	0.0323	0.0003538		7
rs12631415	3:181208602	A/G	SOX2-OT	intron	0.683	1.04404	0.0130	0.0009248		6
rs12632136	3:180993424	C/G	SOX2-OT	intron	0.964	0.88533	0.0200	1.115E-9		7
rs12632938	3:181110068	A/G	SOX2-OT	intron	1.000	1.05369	0.0106	7.367E-7		7
rs12632946	3:181110261	C/G	SOX2-OT	intron	1.000	0.94904	0.0106	7.477E-7		6
rs12633623	3:181023152	A/G	SOX2-OT	intron	0.982	1.13837	0.0330	0.00008562		7
rs12633750	3:181046478	A/C	SOX2-OT	intron	0.969	1.03448	0.0109	0.0019		7
rs12633981	3:181011435	T/C	SOX2-OT	intron	0.963	0.88790	0.0200	2.577E-9		6
rs12634129	3:180836848	T/C	SOX2-OT	intron	1.000	1.08058	0.0132	4.235E-9		7
rs12635178	3:180797921	T/G	SOX2-OT	intron	0.987	1.12524	0.0193	9.931E-10		6
rs12635338	3:181164506	T/C	SOX2-OT	intron	1.000	0.95342	0.0106	6.336E-6		6
rs12635535	3:180860415	A/G	SOX2-OT	intron	0.985	1.08405	0.0137	3.418E-9		6
rs12636303	3:181104283	A/G	SOX2-OT	intron	0.986	0.89351	0.0323	0.0004927		7
rs12637938	3:180847721	T/C	SOX2-OT	intron	1.000	1.08058	0.0132	4.227E-9		7
rs12638776	3:180852446	T/C	SOX2-OT	intron	0.800	0.93744	0.0133	1.206E-6		6
rs12638820	3:180787494	A/G	SOX2-OT	intron	0.993	0.92164	0.0135	1.635E-9		7
rs12639038	3:181023262	T/C	SOX2-OT	intron	0.983	0.88038	0.0331	0.0001191		6
rs12690590	3:181297473	T/G	SOX2-OT	intron	0.909	1.02532	0.0124	0.04408		7
rs12696490	3:180899278	A/C	SOX2-OT	intron	0.983	1.05180	0.0113	7.166E-6		6
rs13060544	3:181413171	A/G	SOX2-OT	intron	0.928	0.97463	0.0161	0.1106		4
rs13061117	3:181186466	T/C	SOX2-OT	intron	0.951	1.06205	0.0194	0.001924		7
rs13062475	3:180792579	T/C	SOX2-OT	intron	1.000	1.08285	0.0134	3.2E-9		7
rs13063640	3:180876961	T/C	SOX2-OT	intron	0.983	1.05401	0.0112	2.514E-6		7
rs13064642	3:180942375	A/G	SOX2-OT	intron	0.667	1.00080	0.0606	0.9894		7
rs13064866	3:180789706	T/G	SOX2-OT	intron	0.997	0.92543	0.0132	4.553E-9		7
rs13065310	3:180871950	T/C	SOX2-OT	intron	0.997	0.92302	0.0134	2.574E-9		7
rs13065466	3:180871913	A/G	SOX2-OT	intron	0.997	0.92302	0.0134	2.573E-9		7
rs13067618	3:181319659	C/G	SOX2-OT	intron	0.942	1.02153	0.0122	0.08235		6
rs13068871	3:181307219	A/C	SOX2-OT	intron	0.923	1.00441	0.0169	0.7956		7
rs13070015	3:181416606	T/G	SOX2-OT	intron	0.710	1.00130	0.0126	0.9168		5
rs13070997	3:180903028	A/G	SOX2-OT	intron	0.968	1.12930	0.0196	5.225E-10		5
rs13071279	3:180872987	A/C	SOX2-OT	intron	0.997	0.92284	0.0134	2.299E-9		6
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rs16832554	3:181280297	A/G	SOX2-OT	intron	0.993	1.03500	0.0175	0.04926		7
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rs16832561	3:181285422	T/C	SOX2-OT	intron	0.963	1.03293	0.0177	0.06769		5
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rs1806190	3:180778763	T/C	SOX2-OT	intron	1.000	1.07993	0.0132	5.612E-9		6
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rs184776630	3:180949021	A/T	SOX2-OT	intron	0.683	1.04008	0.0647	0.544		-
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rs186281991	3:181358288	A/G	SOX2-OT	intron	0.699	1.05802	0.0730	0.4398		-
rs186500820	3:180868238	A/T	SOX2-OT	intron	0.603	0.91916	0.0299	0.004805		-
rs186549474	3:181084014	A/T	SOX2-OT	intron	0.730	1.10484	0.0371	0.007181		-
rs187904467	3:181316760	A/G	SOX2-OT	intron	0.658	0.97951	0.0415	0.6175		-
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rs188845450	3:181219172	T/G	SOX2-OT	intron	0.818	1.05643	0.0578	0.3424		-
rs188859308	3:180834112	T/C	SOX2-OT	intron	0.821	0.91906	0.0385	0.02832		-
rs189085561	3:181084168	T/G	SOX2-OT	intron	0.650	0.93829	0.0251	0.01123		-
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rs189603203	3:181084814	A/T	SOX2-OT	intron	0.941	0.94885	0.0569	0.356		-
rs189929094	3:180848150	A/G	SOX2-OT	intron	0.761	1.08361	0.0468	0.08618		-
rs191246484	3:181229528	A/G	SOX2-OT	intron	0.754	0.87442	0.0637	0.0351		-
rs191264720	3:180844213	T/G	SOX2-OT	intron	0.744	1.04008	0.0413	0.3422		-
rs191896027	3:180783362	T/G	SOX2-OT	intron	0.613	1.00884	0.0672	0.8954		-
rs192603671	3:181084101	T/G	SOX2-OT	intron	0.737	1.04728	0.0210	0.02829		-
rs192699346	3:181360967	T/C	SOX2-OT	intron	0.678	0.92173	0.0626	0.1926		-
rs192892194	3:181084207	A/G	SOX2-OT	intron	0.658	0.98866	0.0298	0.7008		-
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rs1968217	3:180809911	T/G	SOX2-OT	intron	0.992	0.99422	0.0150	0.6963		6
rs1979407	3:181176295	T/G	SOX2-OT	intron	1.000	0.95390	0.0106	7.947E-6		6
rs1979408	3:181176542	A/G	SOX2-OT	intron	0.997	1.04728	0.0106	0.00001359		7
rs1980215	3:181061295	A/G	SOX2-OT	intron	0.995	0.97941	0.0114	0.06725		6
rs1989149	3:180943232	A/G	SOX2-OT	intron	0.997	1.00080	0.0158	0.9574		6
rs2037305	3:181097177	T/C	SOX2-OT	intron	0.983	0.99382	0.0120	0.605		6
rs2127238	3:181166738	T/C	SOX2-OT	intron	0.999	1.04802	0.0106	9.545E-6		7
rs2127239	3:181229221	A/T	SOX2-OT	intron	0.953	1.01005	0.0113	0.3749		7
rs2139181	3:181020115	T/C	SOX2-OT	intron	0.921	0.96445	0.0111	0.00114		7
rs2176612	3:180993339	A/G	SOX2-OT	intron	0.987	0.99651	0.0160	0.8286		7
rs2199718	3:181204102	T/G	SOX2-OT	intron	0.995	1.03210	0.0105	0.002722		5
rs2216427	3:180785697	C/G	SOX2-OT	intron	0.992	1.05285	0.0111	3.872E-6		6
rs2216428	3:180791551	T/C	SOX2-OT	intron	0.987	1.01126	0.0156	0.4755		7
rs2262584	3:180945121	A/G	SOX2-OT	intron	0.998	0.98896	0.0150	0.4566		7
rs2291062	3:181284625	A/T	SOX2-OT	intron	0.897	0.95380	0.0219	0.03094		6
rs2338544	3:181290492	T/C	SOX2-OT	intron	0.885	1.00672	0.0253	0.7905		7
rs2338739	3:181256254	A/G	SOX2-OT	intron	0.925	1.00753	0.0119	0.5283		5
rs2338740	3:181229304	A/G	SOX2-OT	intron	0.953	0.99005	0.0113	0.375		6
rs2339416	3:181080553	T/C	SOX2-OT	intron	0.985	0.99740	0.0115	0.8199		7
rs2339418	3:180954916	T/C	SOX2-OT	intron	0.998	0.98886	0.0150	0.4538		7
rs2339419	3:180914963	A/G	SOX2-OT	intron	0.754	1.06919	0.0190	0.0004247		7
rs2436009	3:180945728	T/G	SOX2-OT	intron	0.996	1.00884	0.0146	0.5458		7
rs2436010	3:180964147	A/G	SOX2-OT	intron	0.906	0.98748	0.0146	0.3884		7
rs2465961	3:180852383	T/C	SOX2-OT	intron	0.866	0.94393	0.0129	8.277E-6		7
rs2465962	3:180852353	T/C	SOX2-OT	intron	0.811	0.94252	0.0134	9.581E-6		6
rs2543163	3:180831977	A/G	SOX2-OT	intron	0.993	0.94904	0.0111	2.656E-6		6
rs2567643	3:180891515	A/G	SOX2-OT	intron,near-gene-5	0.990	0.94923	0.0112	3.083E-6		6
rs2567644	3:180938727	T/G	SOX2-OT	intron	0.998	0.98965	0.0146	0.4738		7
rs2567645	3:180931852	C/G	SOX2-OT	intron	0.998	1.01005	0.0146	0.4944		7
rs2567646	3:180931399	A/T	SOX2-OT	intron	0.975	1.01339	0.0206	0.5193		7
rs2567647	3:180958933	A/G	SOX2-OT	intron	0.998	0.98916	0.0150	0.4685		7
rs2567648	3:180958684	C/G	SOX2-OT	intron	0.998	0.98995	0.0146	0.4907		5
rs2567651	3:180973122	A/C	SOX2-OT	intron	0.968	0.99690	0.0161	0.8447		6
rs2567652	3:180972589	A/G	SOX2-OT	intron	0.985	1.01298	0.0152	0.3934		7
rs2567653	3:180970915	A/C	SOX2-OT	intron	0.990	0.99312	0.0147	0.6387		6
rs2567654	3:180969609	A/G	SOX2-OT	intron	0.979	1.01440	0.0151	0.3457		7
rs2567655	3:180965371	A/G	SOX2-OT	intron	0.997	0.98857	0.0150	0.4443		7
rs2567656	3:180964556	T/C	SOX2-OT	intron	0.996	0.99950	0.0158	0.9733		7
rs2567657	3:180917370	A/G	SOX2-OT	intron	0.998	1.00833	0.0146	0.5703		7
rs2567658	3:180916710	A/G	SOX2-OT	intron	0.969	1.01177	0.0145	0.42		6
rs2567659	3:180915017	A/T	SOX2-OT	intron	0.856	1.00914	0.0141	0.5195		7
rs2567660	3:180912675	C/G	SOX2-OT	intron	0.997	1.00713	0.0146	0.6293		6
rs2567661	3:180912018	C/G	SOX2-OT	intron	0.998	1.00965	0.0150	0.5235		7
rs2567662	3:180910389	C/G	SOX2-OT	intron	0.998	1.00965	0.0150	0.5217		7
rs2567664	3:180902987	T/G	SOX2-OT	intron	0.998	0.99064	0.0150	0.5317		5
rs2567665	3:180902019	T/C	SOX2-OT	intron	0.990	0.95028	0.0112	5.009E-6		7
rs2567666	3:180901707	A/G	SOX2-OT	intron	0.998	0.99074	0.0150	0.5331		5
rs2567667	3:180897146	A/G	SOX2-OT	intron	0.793	1.02706	0.0224	0.2338		6
rs2567668	3:180896383	A/G	SOX2-OT	intron	0.998	1.00884	0.0150	0.5546		7
rs2718766	3:180966690	A/G	SOX2-OT	intron	0.995	1.00040	0.0157	0.9812		7
rs2718767	3:180910040	T/G	SOX2-OT	intron	0.998	1.00944	0.0150	0.529		6
rs2718770	3:180965601	A/G	SOX2-OT	intron	0.745	0.95973	0.0238	0.08389		7
rs2718771	3:180982076	A/C	SOX2-OT	intron	0.985	0.99362	0.0161	0.6928		7
rs2718772	3:180943426	A/G	SOX2-OT	intron	0.946	0.99422	0.0114	0.614		7
rs2718777	3:180866296	T/C	SOX2-OT	intron	0.970	1.05548	0.0112	1.333E-6		7
rs2718778	3:180944824	A/G	SOX2-OT	intron	0.998	0.98926	0.0150	0.4708		6
rs2718779	3:180906059	A/G	SOX2-OT	intron	0.995	1.00965	0.0146	0.5109		7
rs2718780	3:180906054	A/G	SOX2-OT	intron	0.996	0.99164	0.0146	0.5641		7
rs2718781	3:180905071	A/C	SOX2-OT	intron	0.998	1.00934	0.0150	0.5356		6
rs2718782	3:180916527	A/C	SOX2-OT	intron	0.998	1.01076	0.0150	0.4748		6
rs2718783	3:180890956	T/C	SOX2-OT	intron,near-gene-5	0.998	0.99154	0.0150	0.5708		6
rs2718784	3:180913191	A/C	SOX2-OT	intron	0.998	0.98896	0.0150	0.4583		6
rs2718785	3:180911775	T/G	SOX2-OT	intron	0.998	1.00965	0.0150	0.5206		5
rs2718786	3:180952891	A/G	SOX2-OT	intron	0.981	0.95437	0.0109	0.00001977		6
rs2718787	3:180885659	A/G	SOX2-OT	intron	0.983	0.99402	0.0145	0.6781		6
rs2718788	3:180885648	T/C	SOX2-OT	intron	0.983	0.94961	0.0112	3.671E-6		6
rs2718789	3:180885472	A/G	SOX2-OT	intron	0.925	1.00642	0.0116	0.5846		7
rs2718790	3:180932119	A/C	SOX2-OT	intron	0.999	0.99025	0.0146	0.4999		6
rs2718791	3:180931395	T/C	SOX2-OT	intron	0.948	0.99481	0.0114	0.6509		7
rs2718792	3:180930048	C/G	SOX2-OT	intron	0.984	0.95371	0.0109	0.00001436		7
rs2718793	3:180937223	T/C	SOX2-OT	intron	0.980	0.99980	0.0157	0.9922		7
rs2718794	3:180938097	T/C	SOX2-OT	intron	0.989	1.00341	0.0165	0.8377		6
rs2718795	3:180956360	A/G	SOX2-OT	intron	0.996	0.98995	0.0146	0.4902		6
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rs28547220	3:181249180	T/C	SOX2-OT	intron	0.850	0.98285	0.0376	0.6449		7
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rs28673348	3:181183665	A/G	SOX2-OT	intron	0.986	1.06620	0.0156	0.00004232		6
rs28712864	3:181335796	A/T	SOX2-OT	intron	0.924	0.97132	0.0147	0.04838		6
rs2879464	3:181045873	A/G	SOX2-OT	intron	0.969	1.03894	0.0110	0.0005027		7
rs3026213	3:180707961	T/C	SOX2-OT	near-gene-5	0.990	0.92136	0.0133	7.372E-10		5
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rs3097711	3:180918754	T/G	SOX2-OT	intron	0.998	1.01086	0.0150	0.4711		7
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rs3109466	3:180976789	T/C	SOX2-OT	intron	0.910	1.07885	0.0293	0.009489		7
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rs3109468	3:180874562	T/C	SOX2-OT	intron	0.971	0.94819	0.0112	2.066E-6		6
rs3109469	3:180893577	T/C	SOX2-OT	intron	0.990	1.05253	0.0112	5.159E-6		7
rs3109470	3:180901042	A/G	SOX2-OT	intron	0.964	1.05148	0.0112	7.585E-6		6
rs3109472	3:180911068	A/G	SOX2-OT	intron	0.734	0.96435	0.0213	0.08815		7
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rs34160463	3:181325717	A/G	SOX2-OT	intron	0.692	1.01005	0.0247	0.6867		7
rs34193500	3:180779152	A/G	SOX2-OT	intron	1.000	1.08253	0.0134	3.615E-9		6
rs34196490	3:180890280	A/G	SOX2-OT	intron	0.991	0.92321	0.0135	3.251E-9		7
rs34196661	3:180796379	A/C	SOX2-OT	intron	1.000	0.92349	0.0134	3.121E-9		6
rs34204232	3:181331542	A/G	SOX2-OT	intron	0.688	1.00833	0.0248	0.7373		7
rs34253840	3:181064419	A/T	SOX2-OT	intron	0.770	0.97814	0.0121	0.06738		6
rs34308817	3:181418201	T/G	SOX2-OT	intron	0.896	1.03231	0.0176	0.07093		5
rs34331582	3:180813831	A/C	SOX2-OT	intron	1.000	0.92367	0.0134	3.465E-9		6
rs34387717	3:180900955	C/G	SOX2-OT	intron	0.990	0.95066	0.0112	5.836E-6		5
rs34417062	3:181337070	C/G	SOX2-OT	intron	0.955	1.02829	0.0146	0.05579		7
rs34502481	3:181054079	A/G	SOX2-OT	intron	0.959	0.93351	0.0183	0.0001642		6
rs34718862	3:180837678	A/G	SOX2-OT	intron	0.996	0.92487	0.0134	5.362E-9		6
rs34797639	3:181225030	T/C	SOX2-OT	intron	0.964	0.94734	0.0264	0.0403		7
rs34866469	3:181138805	A/T	SOX2-OT	intron,near-gene-3,ncRNA	0.715	1.09713	0.0691	0.1796		7
rs34977120	3:181324894	A/G	SOX2-OT	intron	0.911	0.96387	0.0155	0.01729		7
rs35032109	3:180829652	C/G	SOX2-OT	intron	1.000	0.92321	0.0134	2.686E-9		6
rs35034696	3:181322847	T/C	SOX2-OT	intron	0.666	1.00773	0.0298	0.7963		7
rs35039934	3:180796814	A/G	SOX2-OT	intron	1.000	1.08004	0.0132	5.563E-9		7
rs35212830	3:180827808	A/G	SOX2-OT	intron	0.992	1.08156	0.0134	5.07E-9		6
rs35242340	3:181185336	T/C	SOX2-OT	intron	0.987	1.06748	0.0156	0.0000297		6
rs35364893	3:181406433	A/G	SOX2-OT	intron	0.918	0.97599	0.0163	0.1367		7
rs35392718	3:181372482	T/C	SOX2-OT	intron	0.946	1.02644	0.0146	0.0738		7
rs35443912	3:181005988	A/G	SOX2-OT	intron	0.988	0.95256	0.0354	0.1696		7
rs35589824	3:181090035	T/C	SOX2-OT	intron	0.948	1.10054	0.0226	0.00002285		7
rs35678296	3:180954118	A/T	SOX2-OT	intron	0.984	1.08698	0.0136	7.911E-10		7
rs35746395	3:181245320	A/G	SOX2-OT	intron	0.814	0.92450	0.0203	0.0001098		7
rs35788479	3:181426554	A/G	SOX2-OT	intron	0.893	1.02716	0.0164	0.1012		7
rs3849428	3:180802537	T/C	SOX2-OT	intron	0.988	1.01086	0.0156	0.4909		6
rs3860517	3:180804471	A/G	SOX2-OT	intron	0.993	0.94971	0.0111	3.616E-6		5
rs3923072	3:181373702	T/G	SOX2-OT	intron	0.987	1.02081	0.0137	0.1316		5
rs3923172	3:181375474	A/C	SOX2-OT	intron	0.973	0.98000	0.0138	0.1431		7
rs3923173	3:181375381	A/G	SOX2-OT	intron	0.974	1.02010	0.0138	0.1483		5
rs3964729	3:181309561	A/C	SOX2-OT	intron	0.944	1.02204	0.0122	0.07422		7
rs4103351	3:181333513	A/T	SOX2-OT	intron	0.926	0.98000	0.0110	0.0652		5
rs4133078	3:181378992	A/G	SOX2-OT	intron	0.918	0.97511	0.0168	0.1334		6
rs41330845	3:181254993	C/G	SOX2-OT	intron	0.836	0.96474	0.0281	0.2013		7
rs41429646	3:181255017	T/C	SOX2-OT	intron	0.835	1.03448	0.0281	0.2287		6
rs4267641	3:181198242	C/G	SOX2-OT	intron	0.959	1.00010	0.0112	0.9962		7
rs4282105	3:181378084	A/G	SOX2-OT	intron	0.829	0.97756	0.0179	0.2046		7
rs4306901	3:181413658	A/T	SOX2-OT	intron	0.935	0.97463	0.0159	0.1062		5
rs4327434	3:181376675	T/C	SOX2-OT	intron	0.930	0.98118	0.0140	0.1759		5
rs4339108	3:180981244	A/G	SOX2-OT	intron	0.994	1.05232	0.0352	0.1473		7
rs4434184	3:181422854	A/G	SOX2-OT	intron	0.885	0.97268	0.0146	0.057		5
rs4456860	3:180840488	T/C	SOX2-OT	intron	0.995	0.92330	0.0133	1.977E-9		7
rs4459940	3:181435290	A/T	SOX2-OT	intron	0.680	1.01888	0.0130	0.1502		5
rs4499648	3:181376666	A/C	SOX2-OT	intron	0.933	0.98187	0.0140	0.1921		5
rs4510419	3:181414946	C/G	SOX2-OT	intron	0.874	1.03376	0.0142	0.01911		5
rs4558808	3:181386530	A/C	SOX2-OT	intron	0.798	1.01552	0.0120	0.1994		7
rs4575941	3:181435148	A/G	SOX2-OT	intron	0.723	1.00050	0.0138	0.9722		5
rs4588359	3:180851992	T/C	SOX2-OT	intron	0.685	0.99382	0.0295	0.8345		6
rs4608697	3:181011601	T/C	SOX2-OT	intron	0.957	0.95066	0.0122	0.00003252		7
rs4854912	3:180781100	T/C	SOX2-OT	intron	0.999	0.92201	0.0135	1.703E-9		7
rs4854913	3:180851257	A/T	SOX2-OT	intron	1.000	1.08329	0.0134	2.583E-9		7
rs4854914	3:181122223	A/G	SOX2-OT	intron	0.991	0.93034	0.0154	2.653E-6		5
rs4854915	3:181174854	A/T	SOX2-OT	intron	0.974	1.01420	0.0113	0.2099		6
rs4854916	3:181183652	C/G	SOX2-OT	intron	0.831	1.00140	0.0119	0.9093		6
rs4854917	3:181183653	T/C	SOX2-OT	intron	0.832	1.00180	0.0119	0.8798		6
rs4854918	3:181185968	T/C	SOX2-OT	intron	0.963	1.11907	0.0327	0.0005868		6
rs4854920	3:181290891	A/G	SOX2-OT	intron	0.870	1.00965	0.0251	0.7033		7
rs4854921	3:181305503	C/G	SOX2-OT	intron	0.940	1.02204	0.0122	0.07543		7
rs4854922	3:181387240	A/G	SOX2-OT	intron	0.795	0.98629	0.0140	0.3265		7
rs4855015	3:180799879	A/C	SOX2-OT	intron	1.000	1.08069	0.0134	7.189E-9		6
rs4855017	3:180807615	C/G	SOX2-OT	intron	1.000	1.08026	0.0132	4.945E-9		5
rs4855018	3:180812691	A/G	SOX2-OT	intron	1.000	1.08253	0.0134	3.545E-9		7
rs4855019	3:180838644	T/C	SOX2-OT	intron	1.000	0.92312	0.0134	2.626E-9		7
rs4855022	3:180879878	C/G	SOX2-OT	intron	0.997	1.08340	0.0134	2.546E-9		7
rs4855023	3:180900051	A/G	SOX2-OT	intron	0.897	0.99352	0.0147	0.6592		7
rs4855025	3:180962122	A/G	SOX2-OT	intron	0.815	1.01623	0.0141	0.2529		6
rs4855026	3:181126962	A/G	SOX2-OT	intron	0.992	0.93109	0.0158	6.374E-6		6
rs4855027	3:181132933	C/G	SOX2-OT	intron	0.992	0.99223	0.0116	0.4983		6
rs4855028	3:181168159	A/T	SOX2-OT	intron	0.991	0.93417	0.0156	0.0000121		6
rs4855030	3:181207203	A/G	SOX2-OT	intron	0.957	1.03469	0.0107	0.00149		7
rs4855032	3:181256521	C/G	SOX2-OT	intron	0.864	0.97278	0.0113	0.01501		7
rs4855033	3:181305465	A/G	SOX2-OT	intron	0.940	0.97844	0.0122	0.07536		7
rs4855034	3:181309473	T/C	SOX2-OT	intron	0.898	0.97365	0.0170	0.1149		6
rs4855035	3:181378692	T/G	SOX2-OT	intron	0.950	0.96715	0.0151	0.02642		6
rs4859120	3:181208850	A/C	SOX2-OT	intron	0.948	1.03552	0.0126	0.005529		7
rs57968739	3:181367024	A/C	SOX2-OT	intron	0.966	0.97336	0.0144	0.06174		7
rs58161208	3:180970213	A/G	SOX2-OT	intron	0.989	1.01837	0.0557	0.7433		6
rs58567301	3:181449591	A/G	SOX2-OT	intron	0.840	1.03759	0.0205	0.07204		7
rs58571780	3:181083401	A/G	SOX2-OT	intron	1.000	0.94990	0.0106	1.168E-6		6
rs58746842	3:181410183	C/G	SOX2-OT	intron	0.681	0.93735	0.0263	0.01388		7
rs58906080	3:181251784	T/C	SOX2-OT	intron	0.845	1.04645	0.0277	0.1016		5
rs58908054	3:181089784	A/G	SOX2-OT	intron	1.000	0.94990	0.0106	1.198E-6		7
rs59515788	3:181301166	A/G	SOX2-OT	intron	0.892	0.97356	0.0171	0.1167		6
rs59516818	3:181301434	A/C	SOX2-OT	intron	0.893	0.97404	0.0170	0.1231		7
rs59668317	3:181207851	A/C	SOX2-OT	intron	0.939	1.04707	0.0109	0.00002364		7
rs60271973	3:181211021	A/G	SOX2-OT	intron	0.984	0.95028	0.0219	0.01977		6
rs60371345	3:181064355	A/C	SOX2-OT	intron	0.978	0.90240	0.0314	0.00107		7
rs60408022	3:180977317	A/G	SOX2-OT	intron	0.991	1.09035	0.0485	0.0747		6
rs60644369	3:181270670	A/G	SOX2-OT	intron	0.693	0.95945	0.0475	0.3834		6
rs60650353	3:181406452	T/C	SOX2-OT	intron	0.682	0.93473	0.0262	0.009941		6
rs60695846	3:181376289	T/C	SOX2-OT	intron	0.954	0.97961	0.0140	0.1413		7
rs61214608	3:181016869	T/C	SOX2-OT	intron	0.975	0.92914	0.0480	0.1257		7
rs61401493	3:181273181	A/G	SOX2-OT	intron	0.989	1.03552	0.0175	0.04605		6
rs61432191	3:181320163	A/G	SOX2-OT	intron	0.913	1.03759	0.0154	0.01656		6
rs61489040	3:181452428	T/C	SOX2-OT	intron	0.651	0.99302	0.0249	0.7776		7
rs61689356	3:181389743	A/T	SOX2-OT	intron	0.704	1.07412	0.0295	0.01555		6
rs61694877	3:181349219	T/G	SOX2-OT	intron	0.998	0.97346	0.0142	0.0578		7
rs62289594	3:180791065	A/C	SOX2-OT	intron	0.999	0.92580	0.0132	5.286E-9		7
rs62289595	3:180791117	A/G	SOX2-OT	intron	1.000	0.92358	0.0134	3.221E-9		7
rs62289596	3:180794914	C/G	SOX2-OT	intron	0.994	0.92459	0.0134	5.174E-9		7
rs62289605	3:180839048	T/G	SOX2-OT	intron	0.996	1.08622	0.0135	1.007E-9		7
rs62289606	3:180852413	T/C	SOX2-OT	intron	0.916	0.92802	0.0138	6.238E-8		7
rs62289619	3:180853911	A/G	SOX2-OT	intron	1.000	1.08350	0.0134	2.409E-9		6
rs62289620	3:180857082	T/C	SOX2-OT	intron	0.885	0.96012	0.0274	0.1372		7
rs62289625	3:180879045	A/C	SOX2-OT	intron	0.882	0.95839	0.0275	0.1227		7
rs62289640	3:180923593	T/C	SOX2-OT	intron	0.998	0.98985	0.0146	0.4827		6
rs62289650	3:181003375	A/G	SOX2-OT	intron	0.610	0.99910	0.0466	0.9839		6
rs62289651	3:181016025	T/C	SOX2-OT	intron	0.957	1.02337	0.0149	0.1207		7
rs62289973	3:181218244	A/G	SOX2-OT	intron	0.681	0.94544	0.0387	0.1472		7
rs62289974	3:181257734	C/G	SOX2-OT	intron	0.797	1.04289	0.0197	0.03286		6
rs62289975	3:181258030	C/G	SOX2-OT	intron	0.863	0.97287	0.0165	0.0969		7
rs62289976	3:181259675	A/C	SOX2-OT	intron	0.939	0.96377	0.0167	0.02715		7
rs62289978	3:181268302	A/G	SOX2-OT	intron	0.973	1.03821	0.0165	0.02275		7
rs62291664	3:181063685	A/G	SOX2-OT	intron	0.900	0.97550	0.0136	0.06826		6
rs62291668	3:181093634	T/G	SOX2-OT	intron	0.773	0.93520	0.0162	0.00003461		6
rs62291669	3:181114622	T/C	SOX2-OT	intron	0.866	1.00501	0.0196	0.7976		7
rs62291670	3:181114728	T/C	SOX2-OT	intron	1.000	1.05369	0.0106	7.677E-7		6
rs62291673	3:181123374	T/G	SOX2-OT	intron	0.803	1.01603	0.0240	0.5071		7
rs62291695	3:181183285	A/G	SOX2-OT	intron	0.994	0.95667	0.0106	0.00003019		6
rs62291697	3:181185538	A/G	SOX2-OT	intron	0.994	0.95648	0.0106	0.00002685		7
rs62291700	3:181203292	A/G	SOX2-OT	intron	0.995	1.04498	0.0106	0.00003284		6
rs62291701	3:181205232	T/C	SOX2-OT	intron	0.763	0.97054	0.0308	0.3315		5
rs6414490	3:181320396	T/C	SOX2-OT	intron	0.972	0.98926	0.0107	0.315		6
rs6414491	3:181325772	T/G	SOX2-OT	intron	0.964	0.98946	0.0107	0.3234		7
rs6414493	3:181364589	A/G	SOX2-OT	intron	0.969	1.00652	0.0113	0.5634		7
rs6443738	3:180991746	A/C	SOX2-OT	intron	0.954	1.04446	0.0112	0.00009777		6
rs6443739	3:180991747	T/C	SOX2-OT	intron	0.956	1.04477	0.0111	0.00008683		6
rs6443740	3:180998673	A/G	SOX2-OT	intron	0.993	1.05317	0.0353	0.142		7
rs6443741	3:181022691	A/C	SOX2-OT	intron	0.970	0.96551	0.0109	0.001225		7
rs6443744	3:181271872	A/G	SOX2-OT	intron	0.967	1.03283	0.0161	0.04413		6
rs6443745	3:181278376	T/G	SOX2-OT	intron	0.995	0.96638	0.0175	0.05067		7
rs6443746	3:181278496	T/C	SOX2-OT	intron	1.010	1.03056	0.0166	0.06953		7
rs6443747	3:181294155	A/T	SOX2-OT	intron	0.812	1.04802	0.0131	0.000333		5
rs6443748	3:181320679	A/G	SOX2-OT	intron	0.967	0.98718	0.0107	0.2295		5
rs6443749	3:181321265	T/C	SOX2-OT	intron	0.967	1.01491	0.0107	0.1685		6
rs6443750	3:181329682	T/C	SOX2-OT	intron	0.802	1.00100	0.0156	0.9508		5
rs6443751	3:181334964	T/C	SOX2-OT	intron	0.942	0.99293	0.0114	0.5327		7
rs6443752	3:181340709	A/G	SOX2-OT	intron	0.834	0.98049	0.0309	0.5242		6
rs6443753	3:181344253	C/G	SOX2-OT	intron	0.965	1.02061	0.0140	0.1457		5
rs6443754	3:181344912	A/G	SOX2-OT	intron	0.994	1.00652	0.0110	0.5515		6
rs6443755	3:181345020	A/T	SOX2-OT	intron	0.994	1.00642	0.0110	0.5611		7
rs6443756	3:181346209	A/G	SOX2-OT	intron	1.000	0.99392	0.0109	0.5789		6
rs6443757	3:181355783	A/G	SOX2-OT	intron	0.998	0.99372	0.0109	0.5665		7
rs6443758	3:181362327	A/G	SOX2-OT	intron	0.643	0.99471	0.0180	0.7702		6
rs6443759	3:181368790	C/G	SOX2-OT	intron	0.851	1.00411	0.0418	0.9212		6
rs66492443	3:181392520	A/G	SOX2-OT	intron	0.728	1.01796	0.0124	0.1497		6
rs66715101	3:181371116	T/C	SOX2-OT	intron	0.950	1.02624	0.0146	0.07521		6
rs6762456	3:181220879	T/G	SOX2-OT	intron	0.907	0.93510	0.0143	2.862E-6		7
rs6762891	3:180805749	A/G	SOX2-OT	intron	0.748	0.98039	0.0292	0.4982		7
rs6763477	3:181224844	A/G	SOX2-OT	intron	0.987	1.05475	0.0217	0.01424		7
rs6764999	3:181449229	A/G	SOX2-OT	intron	0.901	1.00944	0.0119	0.4287		6
rs6766621	3:181255823	C/G	SOX2-OT	intron	0.867	1.01319	0.0135	0.3328		4
rs6766853	3:180978076	A/G	SOX2-OT	intron	0.991	1.02768	0.0557	0.6232		6
rs6769626	3:181350353	A/G	SOX2-OT	intron	0.993	0.99342	0.0109	0.5463		6
rs6770358	3:181256966	A/G	SOX2-OT	intron	0.813	1.03355	0.0118	0.005279		6
rs6770368	3:180709187	T/G	SOX2-OT	near-gene-5	0.992	1.08459	0.0133	1.061E-9		7
rs6773690	3:181376040	A/C	SOX2-OT	intron	0.951	1.01613	0.0134	0.233		7
rs6775873	3:181263702	A/G	SOX2-OT	intron	0.894	1.05327	0.0198	0.008816		6
rs6775889	3:180786608	A/T	SOX2-OT	intron	1.000	1.08285	0.0134	3.176E-9		6
rs6776327	3:181234224	C/G	SOX2-OT	intron	0.948	1.00240	0.0122	0.8466		7
rs6776369	3:180779547	A/G	SOX2-OT	intron	0.975	1.07993	0.0473	0.1039		6
rs6777339	3:181039018	A/C	SOX2-OT	intron	0.976	0.94195	0.0251	0.01737		6
rs6778227	3:181033842	T/C	SOX2-OT	intron	0.973	1.03469	0.0109	0.001679		6
rs6778471	3:181064210	T/C	SOX2-OT	intron	0.994	1.00562	0.0116	0.6265		6
rs6779538	3:181130641	A/T	SOX2-OT	intron	0.991	0.93090	0.0154	3.152E-6		7
rs6782970	3:181101544	T/C	SOX2-OT	intron	0.990	1.07498	0.0153	2.324E-6		6
rs6784538	3:181372001	A/G	SOX2-OT	intron	0.994	0.97912	0.0136	0.1211		7
rs6784562	3:181372172	T/C	SOX2-OT	intron	0.993	0.98030	0.0137	0.1461		6
rs6791393	3:181063975	A/T	SOX2-OT	intron	0.993	1.00582	0.0116	0.6145		7
rs6792477	3:181361973	A/C	SOX2-OT	intron	0.992	1.01674	0.0136	0.2221		6
rs6793047	3:180780842	T/C	SOX2-OT	intron	0.973	0.92580	0.0474	0.1034		7
rs6796905	3:181079709	A/G	SOX2-OT	intron	0.997	1.01857	0.0113	0.1055		6
rs6798994	3:181346499	T/G	SOX2-OT	intron	0.994	0.98432	0.0136	0.2455		6
rs6799604	3:181111840	T/C	SOX2-OT	intron	1.000	0.94904	0.0106	7.457E-7		7
rs6800127	3:181378350	A/T	SOX2-OT	intron	0.925	1.03686	0.0159	0.02281		7
rs6800615	3:181234104	A/G	SOX2-OT	intron	0.950	0.98768	0.0115	0.2811		6
rs6801189	3:180832739	A/G	SOX2-OT	intron	1.000	1.08307	0.0134	2.838E-9		7
rs6802408	3:181216629	A/C	SOX2-OT	intron	0.752	1.02245	0.0134	0.09665		6
rs6803157	3:181365474	A/G	SOX2-OT	intron	0.989	1.01694	0.0136	0.2184		6
rs6803277	3:181335509	A/C	SOX2-OT	intron	0.899	1.00020	0.0116	0.9869		7
rs6803582	3:181081667	C/G	SOX2-OT	intron	0.987	0.92988	0.0159	4.517E-6		7
rs6804481	3:181117474	A/G	SOX2-OT	intron	0.991	1.00582	0.0116	0.6156		7
rs6808295	3:181372008	A/G	SOX2-OT	intron	0.991	1.01979	0.0136	0.1494		7
rs6809817	3:181415945	T/G	SOX2-OT	intron	0.941	0.97619	0.0158	0.1276		5
rs72497169	3:180851204	T/C	SOX2-OT	intron	0.944	0.99481	0.0278	0.8507		6
rs72497172	3:181324890	A/G	SOX2-OT	intron	0.895	1.02614	0.0170	0.1287		7
rs73047533	3:181454527	A/G	SOX2-OT	intron	0.706	0.99880	0.0218	0.9567		7
rs73047536	3:181455676	A/G	SOX2-OT	intron	0.712	1.00441	0.0216	0.8392		7
rs73057764	3:181238857	T/C	SOX2-OT	intron	0.885	0.98452	0.0385	0.6846		7
rs73057766	3:181239823	A/T	SOX2-OT	intron	0.886	1.01197	0.0383	0.7567		5
rs73057771	3:181241475	A/G	SOX2-OT	intron	0.884	1.01147	0.0383	0.7667		6
rs73057778	3:181249559	C/G	SOX2-OT	intron	0.855	0.99164	0.0391	0.8298		6
rs73057783	3:181254732	A/T	SOX2-OT	intron	0.837	1.03738	0.0281	0.1911		7
rs73061213	3:181280047	A/G	SOX2-OT	intron	1.000	1.03087	0.0166	0.06765		7
rs73061215	3:181287811	A/G	SOX2-OT	intron	0.679	0.98975	0.0470	0.8265		7
rs73061218	3:181288737	A/G	SOX2-OT	intron	0.931	1.03241	0.0172	0.06298		6
rs73061265	3:181334193	A/G	SOX2-OT	intron	0.858	1.01755	0.0206	0.3999		7
rs73061567	3:181370904	A/C	SOX2-OT	intron	0.990	0.98010	0.0137	0.1417		7
rs73061572	3:181371823	T/C	SOX2-OT	intron	0.992	1.02061	0.0136	0.1341		6
rs73176346	3:180791646	A/G	SOX2-OT	intron	0.796	1.13997	0.0391	0.0007995		7
rs73176350	3:180795521	T/C	SOX2-OT	intron	0.796	0.87687	0.0391	0.0007752		7
rs73176356	3:180806268	A/G	SOX2-OT	intron	0.679	0.98896	0.0485	0.8185		6
rs73176365	3:180866566	T/C	SOX2-OT	intron	0.816	1.07616	0.0161	4.796E-6		7
rs73176388	3:180929557	T/C	SOX2-OT	intron	0.692	0.88683	0.0426	0.004828		7
rs73178319	3:180987105	T/C	SOX2-OT	intron	0.601	0.85308	0.0666	0.01707		7
rs73178364	3:181109481	A/T	SOX2-OT	intron	0.971	1.05295	0.0108	1.602E-6		6
rs73180413	3:181235249	T/C	SOX2-OT	intron	0.948	0.99770	0.0122	0.8489		6
rs73180423	3:181239335	T/C	SOX2-OT	intron	0.946	1.00250	0.0122	0.8354		7
rs73180429	3:181247120	A/G	SOX2-OT	intron	0.942	1.00180	0.0123	0.8819		6
rs73180439	3:181255537	T/C	SOX2-OT	intron	0.938	0.99293	0.0118	0.5483		7
rs73180451	3:181293370	A/G	SOX2-OT	intron	0.791	0.96831	0.0162	0.04691		7
rs73180474	3:181334376	T/C	SOX2-OT	intron	0.762	0.95380	0.0304	0.1191		7
rs73180488	3:181368797	A/G	SOX2-OT	intron	0.791	1.03925	0.0292	0.1867		6
rs73182313	3:181453486	A/G	SOX2-OT	intron	0.731	1.00351	0.0378	0.9263		6
rs733422	3:181122050	A/C	SOX2-OT	intron	1.000	1.05380	0.0106	7.163E-7		5
rs7373337	3:181183727	A/C	SOX2-OT	intron	0.986	1.06588	0.0156	0.0000446		6
rs73884137	3:180857133	T/C	SOX2-OT	intron	0.947	1.09812	0.0492	0.05689		6
rs73884160	3:180985149	A/C	SOX2-OT	intron	0.990	1.01511	0.0561	0.789		6
rs73884161	3:180985195	T/C	SOX2-OT	intron	0.991	1.08415	0.0477	0.09063		7
rs73884172	3:181011798	A/G	SOX2-OT	intron	0.977	1.07670	0.0479	0.1229		5
rs73887032	3:181250707	T/C	SOX2-OT	intron	0.729	1.00310	0.0206	0.8821		7
rs7426901	3:181361312	C/G	SOX2-OT	intron	0.990	0.97181	0.0143	0.0452		6
rs74284696	3:181070831	A/G	SOX2-OT	intron	0.980	1.11171	0.0315	0.0007841		7
rs74284699	3:181123267	A/G	SOX2-OT	intron	0.986	1.11918	0.0323	0.0004908		7
rs74285510	3:181313912	T/C	SOX2-OT	intron	0.898	1.02655	0.0170	0.1226		7
rs7430555	3:181303702	T/C	SOX2-OT	intron	0.893	0.97317	0.0171	0.111		7
rs74329936	3:180879773	A/G	SOX2-OT	intron	0.824	1.00260	0.0263	0.9209		5
rs74410874	3:181255358	A/C	SOX2-OT	intron	0.943	0.99790	0.0121	0.859		5
rs74435201	3:181351181	A/T	SOX2-OT	intron	0.926	1.01390	0.0438	0.7526		6
rs74446079	3:181088911	A/C	SOX2-OT	intron	0.988	0.89324	0.0323	0.0004669		7
rs74467489	3:181249496	C/G	SOX2-OT	intron	0.879	0.93697	0.0417	0.1185		6
rs74493139	3:181081024	A/C	SOX2-OT	intron	0.821	0.98718	0.0488	0.7908		5
rs74504170	3:181224832	A/G	SOX2-OT	intron	0.671	0.95132	0.0511	0.3288		7
rs74571695	3:181303532	T/C	SOX2-OT	intron	0.885	0.97268	0.0170	0.104		6
rs74583045	3:181311082	A/T	SOX2-OT	intron	0.894	1.02819	0.0207	0.1792		7
rs74617612	3:180986599	C/G	SOX2-OT	intron	0.937	1.01593	0.0278	0.5702		6
rs74660691	3:181102370	T/C	SOX2-OT	intron	0.959	1.00844	0.0281	0.7654		7
rs74675191	3:180820584	A/T	SOX2-OT	intron	0.608	1.05538	0.0485	0.2665		6
rs74700678	3:181227010	A/T	SOX2-OT	intron	0.810	1.03179	0.0440	0.4763		7
rs74711717	3:181018857	A/T	SOX2-OT	intron	0.910	0.93258	0.0454	0.1238		6
rs74715670	3:181191029	A/G	SOX2-OT	intron	0.838	0.97054	0.0377	0.4278		7
rs74729136	3:181168829	A/G	SOX2-OT	intron	0.855	1.00914	0.0365	0.8036		7
rs74881698	3:180884352	T/C	SOX2-OT	intron	0.953	0.96185	0.0172	0.0239		7
rs74896883	3:180894780	T/C	SOX2-OT	intron	0.991	1.08329	0.0135	3.16E-9		2b
rs74909485	3:181108220	A/G	SOX2-OT	intron	0.813	1.00612	0.0476	0.8976		6
rs74968973	3:181265205	C/G	SOX2-OT	intron	0.880	0.98708	0.0580	0.8227		7
rs74984720	3:181018922	A/G	SOX2-OT	intron	0.637	0.98669	0.0355	0.7052		7
rs75072684	3:181299567	C/G	SOX2-OT	intron	0.884	1.02819	0.0172	0.1059		5
rs75191032	3:181292389	A/G	SOX2-OT	intron	0.725	0.97844	0.0353	0.538		7
rs75261713	3:181282298	T/C	SOX2-OT	intron	0.750	1.10794	0.0479	0.03218		4
rs75304040	3:181322339	A/G	SOX2-OT	intron	0.896	0.97502	0.0170	0.1358		7
rs75307326	3:181101022	A/G	SOX2-OT	intron	0.985	0.89360	0.0323	0.0004918		7
rs75345620	3:181094414	T/C	SOX2-OT	intron	0.987	0.89217	0.0322	0.0004023		7
rs75363174	3:181450110	A/G	SOX2-OT	intron	0.844	1.03686	0.0207	0.07953		5
rs75373397	3:181067344	T/G	SOX2-OT	intron	0.974	1.11550	0.0313	0.0004715		7
rs75443053	3:180924605	A/G	SOX2-OT	intron	0.642	0.96870	0.0346	0.358		7
rs75541400	3:181310372	A/G	SOX2-OT	intron	0.889	0.97560	0.0206	0.2288		7
rs75585123	3:181292423	T/G	SOX2-OT	intron	0.832	1.03697	0.0224	0.1054		6
rs75621245	3:180783435	T/C	SOX2-OT	intron	0.781	1.05380	0.0479	0.2744		7
rs75824135	3:181320970	T/C	SOX2-OT	intron	0.894	0.97902	0.0170	0.2129		6
rs75892360	3:181372929	A/G	SOX2-OT	intron	0.885	1.02357	0.0443	0.5991		7
rs75907840	3:181420180	T/G	SOX2-OT	intron	0.669	1.05190	0.0170	0.002994		4
rs76014561	3:181298791	T/C	SOX2-OT	intron	0.881	1.02840	0.0172	0.1034		7
rs76052114	3:181113912	T/C	SOX2-OT	intron	0.709	1.00000	0.0318	1		7
rs76085869	3:181219400	A/T	SOX2-OT	intron	0.818	0.94667	0.0578	0.343		6
rs76168255	3:181375742	C/G	SOX2-OT	intron	0.863	0.97492	0.0447	0.57		6
rs76186176	3:181251633	T/C	SOX2-OT	intron	0.916	1.00260	0.0122	0.8333		7
rs76188562	3:180925910	A/G	SOX2-OT	intron	0.644	1.00000	0.0303	0.9991		5
rs76213324	3:181347009	A/G	SOX2-OT	intron	0.649	1.02010	0.0651	0.7597		4
rs76234275	3:181411855	A/G	SOX2-OT	intron	0.680	1.06801	0.0262	0.01218		5
rs7627267	3:181182757	A/T	SOX2-OT	intron	0.986	1.06791	0.0156	0.00002666		7
rs7631379	3:181409057	T/C	SOX2-OT	intron	0.864	0.96638	0.0142	0.0157		5
rs7632216	3:181413035	A/G	SOX2-OT	intron	0.935	1.02583	0.0159	0.1097		5
rs76345802	3:180803530	A/G	SOX2-OT	intron	0.764	0.96503	0.0370	0.3369		6
rs76349811	3:180995272	A/G	SOX2-OT	intron	0.934	0.98423	0.0289	0.5818		6
rs7635315	3:180988026	T/C	SOX2-OT	intron	0.990	0.98521	0.0561	0.791		7
rs76367457	3:181319508	T/C	SOX2-OT	intron	0.897	1.02583	0.0170	0.1332		7
rs76395499	3:180996455	T/C	SOX2-OT	intron	0.946	1.03676	0.0325	0.2663		7
rs76412676	3:181062087	A/G	SOX2-OT	intron	0.984	0.89119	0.0323	0.0003596		7
rs7643765	3:181412919	T/C	SOX2-OT	intron	0.935	0.97463	0.0159	0.1076		5
rs76449446	3:181356689	A/G	SOX2-OT	intron	0.668	0.96532	0.0345	0.3055		6
rs7648923	3:181047241	A/G	SOX2-OT	intron	0.960	1.00000	0.0254	0.9988		5
rs76541056	3:180979008	A/T	SOX2-OT	intron	0.990	0.98482	0.0561	0.7846		6
rs76564994	3:181077955	A/G	SOX2-OT	intron	0.843	1.03107	0.0534	0.5672		7
rs76585683	3:180885912	T/G	SOX2-OT	intron	0.758	1.04980	0.0225	0.03093		6
rs76632828	3:181278755	T/C	SOX2-OT	intron	0.892	0.98246	0.0568	0.7549		7
rs76663902	3:180996472	A/G	SOX2-OT	intron	0.648	1.00100	0.0303	0.9735		6
rs76724995	3:181017033	T/C	SOX2-OT	intron	0.700	1.02194	0.0361	0.5466		6
rs76782611	3:181320817	A/G	SOX2-OT	intron	0.894	1.02153	0.0170	0.2116		7
rs76812636	3:181317659	A/C	SOX2-OT	intron	0.897	0.97482	0.0170	0.1327		6
rs76904758	3:180849397	A/T	SOX2-OT	intron	0.809	0.94073	0.0337	0.06963		7
rs76938559	3:181269016	T/G	SOX2-OT	intron	0.971	0.96368	0.0165	0.0247		6
rs76965881	3:181367377	A/G	SOX2-OT	intron	0.904	1.01684	0.0440	0.7051		7
rs76971514	3:181318361	A/G	SOX2-OT	intron	0.897	1.02562	0.0170	0.1358		7
rs76987726	3:181061239	C/G	SOX2-OT	intron	0.967	1.01745	0.0278	0.5329		6
rs77070284	3:181341470	T/C	SOX2-OT	intron	0.914	1.01664	0.0441	0.7076		5
rs77088139	3:181176194	A/C	SOX2-OT	intron	0.989	0.88736	0.0325	0.0002337		7
rs77122555	3:181298524	T/C	SOX2-OT	intron	0.876	0.97346	0.0172	0.1183		6
rs77255733	3:181423423	T/C	SOX2-OT	intron	0.696	1.04728	0.0307	0.1324		5
rs77269161	3:180976194	A/G	SOX2-OT	intron	0.807	0.94857	0.0421	0.2093		7
rs77311234	3:181060581	T/C	SOX2-OT	intron	0.687	0.95810	0.0447	0.339		7
rs77356515	3:181378930	T/G	SOX2-OT	intron	0.724	1.06876	0.0376	0.07678		6
rs77382051	3:181405422	T/C	SOX2-OT	intron	0.682	1.06994	0.0262	0.009799		5
rs77402959	3:181064418	A/T	SOX2-OT	intron	0.855	0.90023	0.0313	0.0007965		6
rs77502708	3:181192900	T/C	SOX2-OT	intron	0.959	1.11360	0.0327	0.0009898		6
rs77589592	3:181447901	A/G	SOX2-OT	intron	0.603	0.93679	0.0565	0.2478		5
rs77605571	3:181172049	A/G	SOX2-OT	intron	0.989	0.88736	0.0325	0.0002333		7
rs77685909	3:181400935	A/G	SOX2-OT	intron	0.703	1.05348	0.0311	0.09427		5
rs77741315	3:181459789	T/C	SOX2-OT	ncRNA	0.761	1.00170	0.0321	0.9577		6
rs77770688	3:181233892	A/G	SOX2-OT	intron	0.985	0.94772	0.0217	0.01354		6
rs77808081	3:181165919	A/G	SOX2-OT	intron	0.635	0.98413	0.0297	0.5896		7
rs77835992	3:181061628	T/G	SOX2-OT	intron	0.640	0.98560	0.0306	0.6353		6
rs77943139	3:181233876	C/G	SOX2-OT	intron	0.757	0.99780	0.0242	0.9261		7
rs77950386	3:181310662	A/G	SOX2-OT	intron	0.899	1.02675	0.0170	0.1194		7
rs78034611	3:181272438	T/C	SOX2-OT	intron	0.887	1.01949	0.0572	0.7353		6
rs78043310	3:181423734	A/G	SOX2-OT	intron	0.694	1.04739	0.0308	0.1323		5
rs78094684	3:180945740	A/G	SOX2-OT	intron	0.727	0.95782	0.0528	0.4142		7
rs78220017	3:180976192	A/G	SOX2-OT	intron	0.754	0.94450	0.0271	0.03478		7
rs78342619	3:181241118	A/C	SOX2-OT	intron	0.934	0.99880	0.0123	0.9205		6
rs78363889	3:181317914	A/T	SOX2-OT	intron	0.897	1.02583	0.0170	0.1331		7
rs78367056	3:180860150	A/G	SOX2-OT	intron	0.718	0.97307	0.0342	0.4255		7
rs78376699	3:181366067	T/C	SOX2-OT	intron	0.907	0.98393	0.0439	0.7118		6
rs78438447	3:181175184	A/C	SOX2-OT	intron	0.989	0.88736	0.0325	0.0002346		4
rs78465504	3:181341635	T/C	SOX2-OT	intron	0.914	1.01674	0.0441	0.7069		5
rs78482057	3:180884938	C/G	SOX2-OT	intron	0.673	0.92895	0.0320	0.02144		6
rs78592962	3:181404662	T/C	SOX2-OT	intron	0.683	1.07079	0.0262	0.009078		5
rs78644132	3:181106385	T/C	SOX2-OT	intron	0.986	1.11918	0.0323	0.0004918		6
rs78648766	3:181326187	A/G	SOX2-OT	intron,near-gene-5	0.875	0.98295	0.0167	0.3052		7
rs78656802	3:181276887	A/G	SOX2-OT	intron	0.892	1.02368	0.0570	0.6819		4
rs78708083	3:180799585	T/C	SOX2-OT	intron	0.942	0.99860	0.0280	0.9605		6
rs78799327	3:181061754	A/G	SOX2-OT	intron	0.984	1.12232	0.0323	0.0003545		6
rs78832581	3:181295788	T/G	SOX2-OT	intron	0.865	1.03138	0.0174	0.07559		6
rs78955508	3:180952074	A/G	SOX2-OT	intron	0.855	0.89485	0.0574	0.05292		6
rs79007896	3:181281242	A/G	SOX2-OT	intron	0.672	1.03842	0.0577	0.5138		6
rs79013521	3:181054447	A/C	SOX2-OT	intron	0.935	1.04269	0.0492	0.3959		7
rs79133454	3:181328764	A/G	SOX2-OT	intron	0.614	1.02173	0.0343	0.5315		5
rs79142131	3:180931183	A/G	SOX2-OT	intron	0.904	0.93576	0.0530	0.2103		7
rs79142493	3:180972291	T/C	SOX2-OT	intron	0.795	1.07154	0.0322	0.03184		7
rs79232365	3:181319332	A/G	SOX2-OT	intron	0.902	1.01990	0.0202	0.3299		6
rs79302623	3:180884536	T/G	SOX2-OT	intron	0.795	0.99054	0.0508	0.8512		6
rs79339987	3:181137010	T/C	SOX2-OT	intron	0.987	0.89628	0.0323	0.0007074		7
rs79386046	3:180916459	A/C	SOX2-OT	intron	0.791	0.98039	0.0353	0.5737		6
rs79490261	3:181245614	A/G	SOX2-OT	intron	0.757	1.00260	0.0241	0.9147		7
rs79548230	3:181062606	A/G	SOX2-OT	intron	0.946	1.12840	0.0336	0.0003221		7
rs79611678	3:181079032	A/G	SOX2-OT	intron	0.860	0.91925	0.0495	0.08876		7
rs79628549	3:181287461	C/G	SOX2-OT	intron	0.837	0.98187	0.0287	0.5244		5
rs79655699	3:181310404	A/G	SOX2-OT	intron	0.899	1.02675	0.0170	0.119		7
rs79712100	3:181030599	A/G	SOX2-OT	intron	0.958	1.01969	0.0286	0.4961		7
rs79737535	3:181287277	A/T	SOX2-OT	intron	0.837	0.98177	0.0287	0.5227		6
rs79750838	3:181322527	A/G	SOX2-OT	intron	0.896	1.02562	0.0170	0.1357		7
rs79755763	3:180950121	C/G	SOX2-OT	intron	0.927	0.91357	0.0481	0.06		6
rs79798039	3:181296709	C/G	SOX2-OT	intron	0.792	1.01187	0.0433	0.7851		7
rs79879633	3:181293463	A/G	SOX2-OT	intron	0.838	1.04404	0.0229	0.05917		7
rs79950807	3:181249607	A/G	SOX2-OT	intron	0.854	1.00844	0.0392	0.8301		7
rs79980961	3:181321140	T/C	SOX2-OT	intron	0.893	1.02163	0.0171	0.21		7
rs80076035	3:181299414	T/C	SOX2-OT	intron	0.884	0.97258	0.0172	0.1051		6
rs80105037	3:181453992	A/C	SOX2-OT	intron	0.626	1.06046	0.0548	0.2845		5
rs80143868	3:181114270	A/T	SOX2-OT	intron	0.709	1.00000	0.0318	0.9992		7
rs80158512	3:181456467	A/G	SOX2-OT	intron	0.730	1.04760	0.0272	0.08729		7
rs80187806	3:181331916	A/C	SOX2-OT	intron	0.664	0.97424	0.0486	0.5917		5
rs80281612	3:181224440	C/G	SOX2-OT	intron	0.954	1.05411	0.0268	0.04945		5
rs80318295	3:181387146	T/C	SOX2-OT	intron	0.751	1.02439	0.0161	0.1352		6
rs899456	3:181125946	A/G	SOX2-OT	intron	0.822	1.00854	0.0223	0.702		7
rs918253	3:180830337	T/C	SOX2-OT	intron	1.000	1.08307	0.0134	2.811E-9		7
rs9290718	3:181013842	T/C	SOX2-OT	intron	0.985	0.98000	0.0564	0.7204		7
rs9290720	3:181237244	A/G	SOX2-OT	intron	0.953	1.01015	0.0113	0.3725		6
rs9290723	3:181330688	A/T	SOX2-OT	intron	0.928	0.99302	0.0169	0.678		5
rs9290724	3:181343701	A/G	SOX2-OT	intron	0.994	1.00652	0.0110	0.553		7
rs9290725	3:181344496	A/T	SOX2-OT	intron	0.990	1.02727	0.0143	0.06016		6
rs9290727	3:181420618	T/C	SOX2-OT	intron	0.926	0.97697	0.0159	0.1421		5
rs939041	3:180986156	A/G	SOX2-OT	intron	0.991	1.08394	0.0478	0.09149		7
rs9790226	3:181256285	A/G	SOX2-OT	intron	0.731	1.04352	0.0142	0.002746		5
rs9810142	3:180980142	T/G	SOX2-OT	intron	0.993	0.95028	0.0351	0.1461		7
rs9812014	3:181086137	T/C	SOX2-OT	intron	0.989	0.99531	0.0116	0.6851		7
rs9812031	3:180984412	A/G	SOX2-OT	intron	0.994	1.05390	0.0352	0.1359		6
rs9814658	3:181419460	A/G	SOX2-OT	intron	0.931	0.97365	0.0160	0.09542		5
rs9815642	3:181105974	T/C	SOX2-OT	intron	0.990	0.93053	0.0153	2.573E-6		6
rs9816542	3:181127531	T/C	SOX2-OT	intron	0.991	1.07444	0.0154	2.904E-6		7
rs9816989	3:181160932	A/G	SOX2-OT	intron,near-gene-5	1.000	1.04875	0.0106	6.786E-6		6
rs9817763	3:181036219	A/G	SOX2-OT	intron	0.978	0.94829	0.0249	0.0327		7
rs9820085	3:181031667	C/G	SOX2-OT	intron	0.986	0.96483	0.0139	0.009874		7
rs9820216	3:181113861	A/G	SOX2-OT	intron	0.990	1.07455	0.0153	2.591E-6		7
rs9820600	3:181197074	A/C	SOX2-OT	intron	0.985	1.00260	0.0115	0.8205		7
rs9820920	3:181137091	T/C	SOX2-OT	intron	0.987	0.90231	0.0320	0.001299		7
rs9821187	3:181137068	T/G	SOX2-OT	intron	0.987	0.89951	0.0320	0.0009356		7
rs9821426	3:181167513	T/C	SOX2-OT	intron	0.990	0.93445	0.0161	0.00002528		6
rs9821501	3:181167346	A/G	SOX2-OT	intron	0.989	0.93473	0.0156	0.00001498		6
rs9822494	3:181014206	A/G	SOX2-OT	intron	0.984	0.95418	0.0354	0.1847		7
rs9822509	3:181124892	A/T	SOX2-OT	intron	0.863	0.95628	0.0115	0.0001001		6
rs9823068	3:181368077	A/G	SOX2-OT	intron	0.994	0.98206	0.0136	0.183		5
rs9823623	3:181338494	T/C	SOX2-OT	intron	0.974	1.02675	0.0144	0.06631		5
rs9823644	3:181037475	A/G	SOX2-OT	intron	0.962	1.03272	0.0109	0.00311		6
rs9825132	3:181180667	A/G	SOX2-OT	intron	0.994	0.98255	0.0113	0.1194		7
rs9826653	3:181108197	T/C	SOX2-OT	intron	0.992	1.00602	0.0116	0.601		6
rs9827725	3:181058903	T/C	SOX2-OT	intron	0.980	0.99263	0.0115	0.5223		7
rs9828446	3:181360176	T/C	SOX2-OT	intron	0.993	1.01674	0.0136	0.2224		7
rs9828917	3:181184823	T/C	SOX2-OT	intron	0.987	1.06737	0.0156	0.0000299		7
rs9829172	3:180792196	T/C	SOX2-OT	intron	0.987	1.01116	0.0156	0.4761		7
rs9829210	3:181124766	T/C	SOX2-OT	intron	0.946	0.99661	0.0118	0.7757		6
rs9829233	3:181124796	T/C	SOX2-OT	intron	0.950	0.99611	0.0117	0.736		6
rs9829253	3:181124826	T/C	SOX2-OT	intron	0.896	0.99312	0.0121	0.5702		6
rs9830702	3:180989753	T/C	SOX2-OT	intron	0.990	1.01491	0.0561	0.7925		7
rs9831177	3:181209748	T/C	SOX2-OT	intron	0.895	1.01704	0.0121	0.1631		7
rs9833280	3:181099282	C/G	SOX2-OT	intron	0.991	1.07412	0.0158	6.308E-6		6
rs9835220	3:181064433	T/C	SOX2-OT	intron	0.804	1.00190	0.0278	0.9462		6
rs9835585	3:181064455	T/G	SOX2-OT	intron	0.984	0.92988	0.0158	4.497E-6		6
rs9835927	3:181196540	A/T	SOX2-OT	intron	0.982	0.93566	0.0161	0.00003731		7
rs9836348	3:181382950	A/G	SOX2-OT	intron	0.798	1.01379	0.0140	0.3267		6
rs9836763	3:181106778	T/C	SOX2-OT	intron	0.992	0.99392	0.0116	0.6008		6
rs9837502	3:181376235	C/G	SOX2-OT	intron	0.956	0.98295	0.0134	0.1993		7
rs9837662	3:181353699	A/G	SOX2-OT	intron	0.999	0.99481	0.0110	0.6368		5
rs9838464	3:181061017	T/C	SOX2-OT	intron	0.982	1.07627	0.0154	1.682E-6		6
rs9838604	3:181346790	A/G	SOX2-OT	intron	1.010	1.00612	0.0109	0.5738		6
rs9839776	3:181311567	T/C	SOX2-OT	intron	0.942	0.97746	0.0122	0.06278		7
rs9839791	3:180999943	T/C	SOX2-OT	intron	0.989	0.98472	0.0561	0.7831		7
rs984032	3:181183848	A/T	SOX2-OT	intron	0.968	0.95514	0.0107	0.00001951		6
rs9840344	3:181176012	T/C	SOX2-OT	intron	0.996	1.01806	0.0113	0.1133		7
rs9840583	3:181166969	A/T	SOX2-OT	intron	0.990	0.93454	0.0161	0.00002571		6
rs9841382	3:181408124	T/C	SOX2-OT	intron	0.929	0.97580	0.0160	0.1265		5
rs9841616	3:181167585	A/T	SOX2-OT	intron	0.997	0.92247	0.0143	1.654E-8		5
rs9841842	3:181408416	A/T	SOX2-OT	intron	0.923	1.02173	0.0159	0.1773		5
rs9842371	3:181346937	T/C	SOX2-OT	intron	1.000	1.00531	0.0110	0.6291		4
rs9842796	3:181354483	A/T	SOX2-OT	intron	0.999	0.99392	0.0109	0.5773		7
rs9842957	3:181324494	A/G	SOX2-OT	intron	0.937	0.99352	0.0168	0.6995		6
rs9843266	3:181171783	A/C	SOX2-OT	intron	0.992	1.01898	0.0113	0.0962		7
rs9843646	3:181188948	A/G	SOX2-OT	intron	0.974	0.99312	0.0118	0.5614		7
rs9844139	3:181311915	C/G	SOX2-OT	intron	0.944	1.02194	0.0122	0.07503		6
rs9844617	3:181402480	A/C	SOX2-OT	intron	0.891	1.02460	0.0140	0.08404		5
rs9844882	3:181312192	A/G	SOX2-OT	intron	0.944	0.97873	0.0122	0.07785		7
rs9845058	3:181342415	A/G	SOX2-OT	intron	0.984	0.98442	0.0137	0.2513		4
rs9845290	3:181011586	A/G	SOX2-OT	intron	0.985	0.98000	0.0564	0.7203		7
rs9846082	3:181124253	A/G	SOX2-OT	intron	0.985	0.99641	0.0116	0.7534		5
rs9846262	3:181184575	A/C	SOX2-OT	intron	0.940	1.06322	0.0156	0.00008173		6
rs9847939	3:181338937	T/C	SOX2-OT	intron	0.976	0.97336	0.0144	0.06031		7
rs9848098	3:181054636	A/G	SOX2-OT	intron	0.990	0.99481	0.0116	0.6527		4
rs9848969	3:181094912	A/C	SOX2-OT	intron	0.993	0.99481	0.0116	0.6501		7
rs9849223	3:180976869	A/G	SOX2-OT	intron	0.990	0.98570	0.0560	0.7968		6
rs9849570	3:180977079	A/G	SOX2-OT	intron	0.992	0.98423	0.0557	0.7751		7
rs9849736	3:181063310	T/C	SOX2-OT	intron	0.891	0.98787	0.0117	0.297		6
rs9853264	3:180833269	A/T	SOX2-OT	intron	1.000	0.92543	0.0132	4.271E-9		6
rs9853606	3:181349281	T/C	SOX2-OT	intron	1.000	1.00622	0.0109	0.5723		6
rs9854453	3:181018741	A/G	SOX2-OT	intron	0.981	0.99631	0.0160	0.8156		6
rs9854461	3:181310591	T/C	SOX2-OT	intron	0.988	1.00481	0.0108	0.6556		7
rs9855292	3:181161490	A/G	SOX2-OT	intron,near-gene-5	0.989	1.06962	0.0156	0.00001586		6
rs9858313	3:180812993	A/G	SOX2-OT	intron	0.993	0.94914	0.0111	2.824E-6		6
rs9858365	3:180813165	T/C	SOX2-OT	intron	0.979	0.99442	0.0112	0.6175		7
rs9858369	3:181106851	A/G	SOX2-OT	intron	0.988	1.07390	0.0157	5.934E-6		6
rs9859557	3:180830910	A/T	SOX2-OT	intron	0.997	1.08535	0.0132	5.299E-10		7
rs9860300	3:181124856	T/C	SOX2-OT	intron	0.612	0.91888	0.0362	0.01925		6
rs9861072	3:181176399	T/C	SOX2-OT	intron	0.975	1.00381	0.0260	0.883		6
rs9862690	3:181180409	A/G	SOX2-OT	intron	1.000	1.04791	0.0106	9.735E-6		6
rs9863697	3:181107864	A/G	SOX2-OT	intron	0.988	0.96079	0.0107	0.0001825		7
rs9863700	3:181016806	T/C	SOX2-OT	intron	0.986	1.02603	0.0562	0.6479		6
rs9865240	3:181368853	A/G	SOX2-OT	intron	0.993	1.01816	0.0136	0.1855		7
rs9866064	3:181163641	A/G	SOX2-OT	intron	0.975	1.00341	0.0260	0.8971		6
rs9866774	3:181062970	A/G	SOX2-OT	intron	0.996	0.97981	0.0114	0.07218		7
rs9870296	3:181352573	A/G	SOX2-OT	intron	0.993	0.98383	0.0136	0.2295		7
rs9870874	3:180816853	A/T	SOX2-OT	intron	0.997	0.92478	0.0132	2.883E-9		6
rs9871081	3:181370182	A/T	SOX2-OT	intron	0.984	1.02122	0.0137	0.1261		5
rs9872001	3:181178572	T/C	SOX2-OT	intron	1.000	0.95447	0.0106	0.00001069		6
rs9872994	3:181182342	T/C	SOX2-OT	intron	0.986	0.93679	0.0156	0.00002946		6
rs9873013	3:181182392	A/C	SOX2-OT	intron	0.988	1.00150	0.0115	0.8997		7
rs9873743	3:181349392	A/T	SOX2-OT	intron	1.000	1.00622	0.0109	0.5717		7
rs9875784	3:181288682	A/G	SOX2-OT	intron	0.828	1.01268	0.0147	0.3929		7
rs9876513	3:181188066	A/G	SOX2-OT	intron	0.989	1.00210	0.0111	0.8487		6
rs9880954	3:181220392	T/C	SOX2-OT	intron	0.952	0.99015	0.0113	0.3833		7
rs9882028	3:181355889	T/C	SOX2-OT	intron	0.999	0.99481	0.0110	0.6393		7
rs9882065	3:181129180	T/C	SOX2-OT	intron	0.989	1.00823	0.0116	0.4811		6
rs9883966	3:181272465	A/T	SOX2-OT	intron	0.969	0.96841	0.0160	0.04435		7
rs9968166	3:181370066	T/C	SOX2-OT	intron	0.886	0.98157	0.0435	0.6686		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information