SNAP29

Basic Information

Gene Symbol	SNAP29
Entrez Id	9342
Position	chr22:21213292..21245502
Description	synaptosomal-associated protein, 29kDa
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10483104	22:21220733	T/C	SNAP29	intron	1.010	1.03056	0.0200	0.1323		5
rs111266603	22:21241370	A/G	SNAP29	intron	0.874	1.04467	0.0262	0.09555		6
rs112440283	22:21238592	T/C	SNAP29	intron	0.821	0.94876	0.0216	0.01497		7
rs113543516	22:21240414	A/T	SNAP29	intron	1.000	1.03128	0.0198	0.1199		3a
rs113768745	22:21241485	T/C	SNAP29	intron	1.010	1.02984	0.0200	0.1412		7
rs114554315	22:21216839	A/G	SNAP29	intron	0.997	1.00240	0.0285	0.9338		5
rs115586149	22:21240607	A/G	SNAP29	intron	0.996	0.99770	0.0285	0.9368		6
rs116724059	22:21233762	A/G	SNAP29	intron	0.996	1.00230	0.0285	0.937		7
rs116984278	22:21242879	A/G	SNAP29	untranslated-3	0.630	0.94337	0.0409	0.154		7
rs11705255	22:21230257	A/G	SNAP29	intron	0.945	0.99064	0.0118	0.4246		7
rs117104177	22:21236559	A/G	SNAP29	intron	0.814	1.02901	0.0451	0.5265		7
rs117136991	22:21218240	T/G	SNAP29	intron	0.996	0.99531	0.0285	0.8684		4
rs117143753	22:21230784	C/G	SNAP29	intron	0.923	1.05454	0.0610	0.3844		6
rs117389845	22:21216345	A/C	SNAP29	intron	0.997	0.99760	0.0285	0.9321		7
rs118102236	22:21219571	A/G	SNAP29	intron	0.801	1.00190	0.0377	0.9589		5
rs13054007	22:21229753	T/G	SNAP29	intron	0.848	1.01572	0.0312	0.6156		6
rs13058187	22:21216924	T/C	SNAP29	intron	0.853	0.97541	0.0305	0.4148		5
rs137962989	22:21225097	T/C	SNAP29	intron	0.847	1.01552	0.0465	0.7395		-
rs139397224	22:21241249	T/C	SNAP29	intron	0.929	0.99980	0.0276	0.9944		-
rs139659595	22:21224095	A/G	SNAP29	intron	0.831	0.98285	0.0361	0.6319		-
rs145924092	22:21239282	T/C	SNAP29	intron	0.893	0.99452	0.0387	0.8871		-
rs146448294	22:21230187	T/G	SNAP29	intron	0.677	0.99940	0.0549	0.992		-
rs149435461	22:21225890	A/G	SNAP29	intron	0.623	0.92923	0.0707	0.2989		-
rs150481896	22:21231861	A/G	SNAP29	intron	0.677	1.01227	0.0455	0.7878		-
rs165623	22:21220331	A/G	SNAP29	intron	0.989	0.99203	0.0127	0.5312		4
rs165642	22:21223564	T/C	SNAP29	intron	1.000	1.00743	0.0106	0.4832		7
rs165678	22:21215770	T/G	SNAP29	intron	0.998	0.99203	0.0106	0.4516		7
rs165784	22:21241193	A/G	SNAP29	intron	1.000	1.00753	0.0106	0.4786		7
rs165806	22:21240501	T/C	SNAP29	intron	0.993	1.01857	0.0112	0.09946		7
rs165820	22:21223590	A/G	SNAP29	intron	1.000	1.00743	0.0106	0.4832		7
rs165827	22:21215742	T/C	SNAP29	intron	0.997	1.01694	0.0112	0.1343		6
rs165863	22:21226757	T/C	SNAP29	intron	0.971	0.99064	0.0108	0.3855		7
rs165873	22:21222458	A/G	SNAP29	intron	1.000	0.99263	0.0106	0.4849		5
rs165877	22:21241854	T/C	SNAP29	intron	0.999	1.01949	0.0112	0.08464		2b
rs165905	22:21240108	A/G	SNAP29	intron	0.999	0.98334	0.0111	0.1318		4
rs165930	22:21221849	A/G	SNAP29	intron	1.000	1.00743	0.0106	0.4837		4
rs16988883	22:21229564	T/C	SNAP29	intron	1.010	1.03035	0.0200	0.1352		7
rs178069	22:21217575	A/G	SNAP29	intron	1.000	1.00582	0.0106	0.5817		1f
rs178070	22:21218339	A/G	SNAP29	intron	1.000	1.01745	0.0112	0.1223		6
rs178071	22:21223303	A/G	SNAP29	intron	0.999	0.99183	0.0106	0.4404		5
rs178073	22:21229802	A/G	SNAP29	intron	0.983	0.99780	0.0136	0.8713		7
rs178077	22:21242544	A/G	SNAP29	untranslated-3	0.999	1.01654	0.0111	0.1401		1f
rs180832700	22:21230265	T/C	SNAP29	intron	0.662	1.05749	0.0594	0.3466		-
rs189678725	22:21219643	A/C	SNAP29	intron	0.821	0.98699	0.0578	0.8206		-
rs25188	22:21220669	T/G	SNAP29	intron	1.000	1.00743	0.0106	0.4846		5
rs3171741	22:21242247	C/G	SNAP29	untranslated-3	1.010	1.02984	0.0200	0.1412		7
rs58636169	22:21240045	A/G	SNAP29	intron	0.996	1.00230	0.0285	0.937		4
rs59296003	22:21239895	C/G	SNAP29	intron	0.996	1.00230	0.0285	0.937		4
rs62238482	22:21241240	A/G	SNAP29	intron	0.751	1.01278	0.0339	0.7069		7
rs73162849	22:21224023	A/G	SNAP29	intron	0.815	0.94535	0.0308	0.06793		7
rs78824534	22:21215355	C/G	SNAP29	intron	0.904	0.99501	0.0154	0.7441		6
rs79227995	22:21221039	C/G	SNAP29	intron	0.827	0.96503	0.0350	0.3098		5
rs79383799	22:21242864	T/C	SNAP29	untranslated-3	0.990	1.00421	0.0285	0.8815		6
rs79973372	22:21237418	T/C	SNAP29	intron	0.996	0.99770	0.0285	0.9369		7
rs80068797	22:21219710	T/C	SNAP29	intron	0.680	1.00602	0.0543	0.9118		7
rs95944	22:21235731	A/C	SNAP29	intron	1.000	0.98265	0.0112	0.1185		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18668038	GWAS	3391 cases; 3181 controls
18511947	GWAS	359 cases; 718 controls
19528963	Regional	654 cases; 604 controls
22196331	GWAS	177 cases; 436 controls
19181681	GWAS	471 cases; 2792 controls
Reference	Study type	Sample size

eQTL Information