SMG6

Basic Information
Gene SymbolSMG6
Entrez Id23293
Positionchr17:1963133..2207069
DescriptionSMG6 nonsense mediated mRNA decay factor
Gene typeprotein-coding
SNP Information

SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*
rs100213517:2097583T/GSMG6intron0.9961.057070.01093.67E-75
rs1044530017:2114587T/CSMG6intron0.9991.015820.01120.16246
rs1045991717:2009752A/CSMG6intron0.9981.043830.01310.0010815
rs1085292317:2086355T/GSMG6intron0.9870.989950.01060.34036
rs1085293217:2143460T/GSMG6intron0.9930.937350.01126.988E-94
rs1107801817:2162119A/GSMG6intron0.9921.065770.01121.206E-85
rs1107801917:2162121A/GSMG6intron0.9940.938190.01121.121E-84
rs1107802417:2189324T/CSMG6intron0.9930.938100.01121.045E-86
rs1107885517:2091308T/CSMG6intron0.9950.949040.01178.21E-67
rs1107885617:2092064A/GSMG6intron0.9970.955620.01140.000071394
rs1107886517:2109109A/TSMG6intron0.9930.945920.01104.568E-76
rs1107888317:2138828C/GSMG6intron0.9791.066090.01131.57E-87
rs1107888417:2145193T/CSMG6intron0.9571.047910.01540.0023113a
rs11148301117:2038474T/CSMG6intron0.7751.042790.04560.35846
rs11193396417:2197052A/GSMG6intron0.8961.007530.02830.7917
rs11208380317:2140113A/GSMG6intron,untranslated-50.7900.958010.04250.31285
rs11210884217:2043524T/CSMG6intron0.9060.946300.02710.041577
rs11211154217:2190386T/CSMG6intron0.9561.048230.01950.015897
rs11213400717:2064571T/CSMG6intron0.9761.032100.01890.094157
rs11222911517:2164645C/GSMG6intron0.9180.992830.02220.74457
rs11225889417:2157817T/CSMG6intron0.9881.017250.01130.12987
rs11239950117:2129557A/GSMG6intron0.8230.979220.03510.55016
rs11241563117:2072074C/GSMG6intron0.9800.939320.02380.0086016
rs11242997917:2070246C/GSMG6intron0.8251.061520.04530.18747
rs11280108717:2131580T/CSMG6intron0.9820.985310.01130.19137
rs11300211817:2140065A/GSMG6intron0.8020.993420.05380.90235
rs11333303717:2200106A/GSMG6intron0.9961.018260.01120.1067
rs11345974817:2057629A/GSMG6intron0.9051.056750.02710.041547
rs11351399017:2190390T/CSMG6intron0.9581.047600.01960.017416
rs11367614817:2103920A/GSMG6intron0.9010.946670.02710.043426
rs11374302717:2057219T/GSMG6intron0.9760.968700.01890.092297
rs11414556317:2158866A/GSMG6intron0.7811.072190.05440.20064
rs11688122717:2144402A/GSMG6intron0.7380.877220.06660.049026
rs11694407017:2013320A/GSMG6intron0.9881.048020.03380.16577
rs11698237317:2088869A/CSMG6intron0.9990.954560.03460.17865
rs11702603817:2039648A/GSMG6intron0.8470.989060.04350.79993a
rs11702643017:1979564A/GSMG6intron0.8310.992030.04110.84635
rs11706819317:2203993A/GSMG6intron0.9891.020810.03160.51395
rs11710420217:2100808T/CSMG6intron0.8391.054320.01980.0076725
rs11726568117:2012096T/CSMG6intron0.9360.984520.02630.5547
rs11727594417:2092196A/GSMG6intron0.7021.042890.04730.37517
rs11729226517:2047306A/CSMG6intron0.7941.067370.03010.030477
rs11729870917:2106475A/GSMG6intron0.9541.000100.03180.99646
rs11733400517:2024588A/CSMG6intron0.8510.993120.04160.86857
rs11751767617:2141172A/GSMG6intron,near-gene-50.9691.020100.05180.70165
rs11759242517:2024564A/CSMG6intron0.8450.953320.05030.34284
rs11768365517:2004977T/CSMG6intron0.8941.042060.04280.33644
rs11775679717:2108393T/CSMG6intron0.8921.018570.03080.54997
rs11783000817:2090216A/CSMG6intron0.7780.936040.03190.037945
rs11783820517:2031892T/CSMG6intron0.9091.113270.05330.043817
rs11786564617:2176859A/GSMG6intron0.9401.010250.05050.83976
rs11788661317:2036531A/CSMG6intron0.7770.909190.04060.018886
rs11790434517:2198555C/GSMG6intron0.9941.019790.03150.53427
rs11790899617:1990678T/CSMG6intron,untranslated-50.9611.000500.03310.98715
rs11794774117:2019095A/GSMG6intron0.9851.030660.05150.55687
rs11796622217:2112600A/GSMG6intron0.8571.007130.04240.86757
rs11807517317:2144205A/GSMG6intron0.9610.933420.03190.030933a
rs11807842217:2053521A/GSMG6intron0.9310.985900.05480.79577
rs11808884517:2090944A/GSMG6intron1.0001.051590.03430.14237
rs11811477617:2082366T/CSMG6intron0.7360.994520.05240.91624
rs11813682717:2168104T/GSMG6intron0.9701.017650.01210.14657
rs1186778217:2090507T/GSMG6intron0.9941.054430.01176.209E-67
rs1186961917:2066150C/GSMG6intron0.9800.944120.01181.077E-67
rs1186980517:2176532A/GSMG6intron0.9941.064810.01121.829E-87
rs1187192617:2084712T/CSMG6intron0.9951.009340.02130.66252b
rs1187206817:2176528A/GSMG6intron0.9930.938100.01121.028E-87
rs1205161417:2040420T/CSMG6intron0.9210.879770.03810.00076327
rs1210372617:2192839T/CSMG6intron0.9920.943080.01221.56E-67
rs123120617:2125605A/GSMG6intron0.9930.939230.01122.022E-85
rs123120817:2125131A/GSMG6intron0.9830.941290.01238.323E-75
rs1232582117:2050166T/GSMG6intron0.9871.005620.01090.60726
rs1244960017:1982246A/GSMG6intron0.9930.979220.01090.054235
rs1244984317:2058207A/GSMG6intron0.9881.001900.01110.86147
rs1244987317:2058289C/GSMG6intron0.9881.001900.01110.86166
rs1245011817:2138658T/CSMG6intron0.9700.984420.01150.17276
rs1245027517:2160266T/GSMG6intron0.6181.009750.02680.71756
rs1245035417:2159982T/CSMG6intron0.9941.065880.01121.094E-87
rs1245184417:2192957T/CSMG6intron0.9911.019080.01130.093196
rs1245207417:2051730T/GSMG6intron0.9911.005110.01080.63567
rs1245262017:2158978T/CSMG6intron0.9800.983340.01140.14047
rs1245332317:2160214T/CSMG6intron0.9940.938190.01121.091E-87
rs1260183417:2112431T/CSMG6intron0.9980.941390.01115.683E-85
rs1260191717:2108128A/GSMG6intron0.9690.933140.03220.031375
rs1260211417:2192201A/GSMG6intron0.9580.934260.03190.033097
rs1260213217:2192328T/GSMG6intron0.9580.934260.03190.033136
rs1260249217:1984121C/GSMG6intron0.9700.968510.01400.022127
rs1260276417:2123200A/TSMG6intron0.9941.064810.01121.87E-86
rs1260280217:2122117A/GSMG6intron0.9670.933330.03210.031782b
rs1260305717:2112567T/CSMG6intron0.9961.064920.01111.42E-87
rs1260324317:2033296A/GSMG6intron0.8870.884710.04090.002736
rs1260359217:2119818A/TSMG6intron0.9861.065350.01121.579E-87
rs1293829517:2160854A/GSMG6intron0.9940.938190.01121.098E-85
rs1294162117:2194852T/CSMG6intron0.9841.059610.01122.046E-77
rs1294183617:2194874C/GSMG6intron0.9850.944310.01122.883E-76
rs1294356617:2157774A/GSMG6intron0.9870.937820.01121.141E-86
rs1294585117:2149228T/CSMG6intron0.9731.018160.01620.26897
rs1294901417:1974384A/GSMG6intron0.9660.998600.01570.93144
rs1294999117:2197185A/GSMG6intron0.9911.065990.01121.137E-86
rs1295055517:2156910C/GSMG6intron0.9940.938190.01121.078E-85
rs1295205117:1982790T/CSMG6intron0.9660.987780.01090.25766
rs13832723117:2060471A/CSMG6intron0.7400.904290.04750.03418-
rs13972447417:2121534A/GSMG6intron0.8970.955900.05910.4456-
rs14006644717:2016384T/CSMG6intron0.9180.987780.05480.8218-
rs14049223117:2152217T/GSMG6intron0.7070.898980.04740.02458-
rs14055272017:2197992A/GSMG6intron0.9950.980790.03150.5375-
rs14072785617:2193179T/CSMG6intron0.9961.055910.03420.111-
rs14075107217:2093155A/CSMG6intron0.7141.036860.05650.5224-
rs14076057817:2007610A/GSMG6intron0.9711.025520.05110.6217-
rs14119419917:2019620A/GSMG6intron0.9451.046760.04330.2912-
rs14127094717:2066741T/CSMG6intron0.9960.952660.03420.1566-
rs14139451517:2074509A/CSMG6intron0.9700.955040.03530.1925-
rs14214697317:2122580A/GSMG6intron1.0001.053800.03400.1234-
rs14215278017:2160098A/GSMG6intron0.8621.046240.04230.2855-
rs14242649517:2161604T/CSMG6intron0.9851.017760.01130.121-
rs14250384317:2121328A/CSMG6intron0.8951.043620.05910.4692-
rs14264399517:2017993T/CSMG6intron0.9550.995910.03290.9009-
rs14290958517:2151783T/CSMG6intron0.7481.018770.06310.7679-
rs14349917:2132324T/CSMG6intron0.9890.940450.01124.267E-87
rs14352658817:2091647T/CSMG6intron1.0001.052010.03430.139-
rs14353460317:2088074T/CSMG6intron0.9991.048230.03440.1709-
rs14383882717:2102962A/GSMG6intron0.9770.969670.01870.09983-
rs14387577217:2032420T/CSMG6intron0.9450.939510.03770.09766-
rs14400763917:1985659A/GSMG6intron0.8731.015010.05690.7932-
rs14450536217:2183562T/GSMG6intron,near-gene-30.9480.940820.04340.1597-
rs14663042117:2070405A/GSMG6intron0.6931.042270.04460.3541-
rs14708150717:2053592A/TSMG6intron0.9091.021940.04770.6494-
rs14721815117:2067525T/CSMG6intron0.8080.993520.02460.791-
rs14729303917:1974835A/GSMG6intron0.8100.918240.03290.00939-
rs14743002217:2024589A/TSMG6intron0.9011.019180.03630.5999-
rs14774579017:2176558C/GSMG6intron0.8920.983340.04810.7264-
rs14783568117:2082173A/GSMG6intron0.6260.935850.06480.3061-
rs14813950317:2160270T/GSMG6intron0.6281.024500.04810.6147-
rs14836846017:2166409T/CSMG6intron0.7681.097900.06100.1258-
rs14870210517:2197162A/GSMG6intron0.9040.958770.05800.468-
rs14882192017:2131731T/CSMG6intron0.9991.051380.03390.1399-
rs14906828217:2174781A/GSMG6intron0.9811.018880.01130.09937-
rs14908557417:2091600A/GSMG6intron0.6940.942420.04420.18-
rs14965786917:2172356C/GSMG6intron0.7881.071330.03040.02358-
rs15007372617:2034712T/CSMG6intron0.9891.052110.03540.1513-
rs15011196817:2164327A/GSMG6intron0.9961.050850.03390.1431-
rs15037501917:2190212A/TSMG6intron0.8690.979810.03610.5718-
rs15039701817:2027942T/CSMG6intron0.6650.892530.05010.02328-
rs15043659817:2152220A/GSMG6intron0.6880.901140.04660.02564-
rs15061595217:2053838A/GSMG6intron0.9961.052010.03420.1382-
rs15101902517:1981957T/CSMG6intron0.9721.041540.03500.245-
rs153229217:2097483T/GSMG6intron0.9961.057070.01093.558E-75
rs155556817:2149505T/CSMG6intron1.0001.047280.01160.000065027
rs155556917:2149425A/CSMG6intron0.9980.982550.01120.11616
rs156396617:2095954A/GSMG6intron0.9800.943370.01132.849E-74
rs156576317:2055300T/CSMG6intron0.9911.056220.01183.766E-65
rs156576417:2074303A/GSMG6intron0.9920.944970.01181.641E-67
rs167569817:2191681A/CSMG6intron0.9930.938290.01121.193E-86
rs1695187917:1969912T/CSMG6intron0.9721.035930.03590.32553a
rs1695196217:2060686A/GSMG6intron0.9701.070040.03190.03385
rs1695200617:2099183T/CSMG6intron0.9310.994020.01840.74374
rs1695200917:2102437T/CSMG6intron0.9981.015620.01120.16675
rs1695202017:2115375T/CSMG6intron0.9520.930900.03190.024895
rs1695202517:2116798A/GSMG6intron0.9990.984420.01120.16111f
rs17004117:2170216T/CSMG6intron,near-gene-51.0001.046550.01160.000085044
rs17004517:2196905A/GSMG6intron0.9930.938570.01121.347E-87
rs17756717:2197637T/CSMG6intron0.9931.065240.01121.477E-87
rs1776172317:2107090T/CSMG6intron0.9971.015820.01120.16246
rs1776173417:2108853T/CSMG6intron0.9900.957240.01490.003327
rs1776174617:2115582T/CSMG6intron0.6070.991040.06350.8875
rs1776183717:2154325A/TSMG6intron0.9981.017550.01120.12075
rs1776186417:2171637A/CSMG6intron0.9971.017550.01120.12131f
rs1783432517:2037839A/CSMG6intron0.9780.991240.02150.68243a
rs1783442517:2115271T/CSMG6intron0.9900.957530.01490.0035077
rs1783445517:2122755T/CSMG6intron1.0000.951510.03390.14267
rs1783456317:2172710T/CSMG6intron0.9980.983050.01120.12646
rs1783462717:2198892T/CSMG6intron0.9960.982060.01120.10751f
rs18131970117:2133475A/GSMG6intron0.6231.031900.06460.6271-
rs18318049617:2108674A/TSMG6intron0.6471.125130.06020.0502-
rs18370295517:2194531A/GSMG6intron0.7430.891190.06460.07461-
rs18430827817:2162954A/GSMG6intron0.9361.020710.03150.5139-
rs18470857917:2062480T/CSMG6intron0.8240.915940.06400.1703-
rs18508737517:1980679C/GSMG6intron0.8930.956190.05860.4447-
rs18617771217:2150061A/GSMG6intron0.8640.810670.05990.0004596-
rs18741597317:2171227A/GSMG6intron,near-gene-50.6251.065670.05760.2696-
rs18749337517:2022863A/GSMG6intron0.6380.905830.08580.2489-
rs18804370017:2180307T/GSMG6intron0.9480.940730.04340.1591-
rs18938173817:2024919C/GSMG6intron0.8220.932390.01471.89E-6-
rs19040860817:2071951A/GSMG6intron0.6971.103620.06130.1075-
rs19055426017:2133258T/CSMG6intron0.9681.039250.02000.05472-
rs19067962517:2087522T/CSMG6intron0.9121.031590.05350.5613-
rs19164348417:2089165T/CSMG6intron0.7031.110380.06290.09627-
rs19204762117:2028761A/TSMG6intron0.6080.909370.04190.02339-
rs19282992617:1983636T/CSMG6intron0.6110.919710.05100.1011-
rs19284053817:2015719A/GSMG6intron0.6170.958870.04690.3711-
rs19301191317:2152434A/GSMG6intron0.6050.806540.08060.007664-
rs198466417:2171197A/CSMG6intron,near-gene-50.9851.064390.01122.661E-85
rs199488317:2083881A/TSMG6intron0.9940.946490.01172.408E-65
rs199488417:2084008A/GSMG6intron0.9940.946490.01172.407E-65
rs203867717:2178092C/GSMG6intron1.0001.046550.01160.000082297
rs212620217:2095712A/CSMG6intron0.9891.030660.01060.0044363a
rs213170017:2124724A/GSMG6intron0.9811.012880.01110.24757
rs213170217:2025458T/CSMG6intron0.9921.059610.01189.358E-77
rs213170317:2025360T/GSMG6intron0.9910.944030.01181.083E-67
rs213170417:1970898T/CSMG6intron0.9980.976680.01070.027584
rs21617217:2126504C/GSMG6intron0.9940.940070.01123.155E-84
rs21617417:2164898A/GSMG6intron0.9900.949520.01280.000054027
rs21617517:2167690A/CSMG6intron0.9870.947150.01410.00011975
rs21617817:2168840T/CSMG6intron0.9940.938470.01121.263E-86
rs21617917:2168878A/TSMG6intron0.9941.065560.01121.264E-85
rs21618017:2172416C/GSMG6intron0.9910.938760.01121.53E-86
rs21618217:2173063A/GSMG6intron1.0000.955230.01160.00007527
rs21618317:2173923A/GSMG6intron0.9940.938380.01121.221E-86
rs21618417:2174270T/GSMG6intron0.9730.956570.01350.0010375
rs21618517:2174825T/CSMG6intron0.9111.057920.01136.709E-77
rs21618617:2180651A/GSMG6intron0.9941.046240.01170.00010697
rs21618717:2183784T/CSMG6intron,near-gene-30.9971.044460.01160.0001726
rs21618817:2186455A/GSMG6intron0.9650.936130.01134.399E-96
rs21619017:2187457T/CSMG6intron0.9851.067910.01135.303E-96
rs21619317:2203453A/GSMG6coding-synon0.9930.942990.01098.339E-86
rs21619417:2203348T/CSMG6coding-synon0.9390.954760.01540.00275
rs21619517:2203167T/GSMG6missense0.9990.953610.01130.000028037
rs21619617:2202943T/CSMG6coding-synon0.9990.954280.01160.000055765
rs21619717:2201944A/GSMG6intron0.9880.938760.01121.54E-87
rs21619817:2201735T/CSMG6intron0.9921.058440.01102.376E-77
rs21620117:2198800T/CSMG6intron0.9931.065240.01121.542E-87
rs21620517:2196150T/CSMG6intron0.9921.060140.01221.684E-65
rs21620617:2196088T/CSMG6intron0.9931.065560.01121.294E-87
rs21621517:2140668T/CSMG6intron,near-gene-51.0000.955520.01160.000080747
rs21621617:2145046A/GSMG6intron0.9860.951320.01290.00010397
rs21621717:2145090A/GSMG6intron0.9941.066410.01128.555E-97
rs21621817:2145329A/GSMG6intron0.9890.937350.01127.324E-94
rs21621917:2147291T/CSMG6intron0.9940.937350.01126.911E-95
rs21622017:2148821T/GSMG6intron0.9941.066730.01127.461E-97
rs21622117:2155430A/GSMG6intron0.9851.066410.01129.291E-97
rs21622217:2155701A/TSMG6intron0.9781.066840.01127.786E-95
rs21622317:2155948T/CSMG6intron0.9941.065350.01121.43E-87
rs21622417:2156285T/CSMG6intron1.0000.955330.01160.000076136
rs216935617:2138016A/TSMG6intron0.9891.064390.01122.282E-86
rs216935717:2096441T/CSMG6intron0.9930.940350.01112.971E-85
rs217259317:2025544C/GSMG6intron0.9920.943930.01181.027E-67
rs223248017:1991986A/GSMG6intron,untranslated-50.8550.905560.05000.047357
rs223248517:1968986A/GSMG6intron0.9760.996610.02050.873a
rs223248617:1968983T/CSMG6intron0.9991.031590.01220.011013a
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rs990531617:2005969A/GSMG6intron0.9891.024600.01910.20356
rs990552917:2177732T/CSMG6intron0.9931.066200.01129.322E-96
rs990646717:2069003T/CSMG6intron0.9920.944690.01181.414E-67
rs990650017:2129210A/CSMG6intron0.9930.937070.01115.032E-97
rs990670517:2063714T/GSMG6intron0.9911.056860.01172.181E-67
rs990696817:2077493C/GSMG6intron0.9930.946860.01172.806E-65
rs990738417:2045375A/CSMG6intron0.9921.057390.01182.245E-67
rs990825917:1983106T/CSMG6intron0.9960.979410.01070.052895
rs990837317:2086534A/GSMG6intron0.9830.946860.01183.563E-66
rs990888817:2102453C/GSMG6intron0.9980.941580.01116.155E-85
rs990897217:2103810A/CSMG6intron0.9981.062160.01116.01E-86
rs990951517:2039733T/CSMG6intron0.9901.060240.01187.954E-74
rs990989517:2161633A/GSMG6intron0.9940.938100.01121.04E-85
rs991041317:2081419A/GSMG6intron0.9940.946580.01172.461E-67
rs991084917:2175768T/CSMG6intron0.9920.942800.01221.488E-64
rs991238517:2062591T/GSMG6intron0.9921.057170.01171.857E-65
rs991251517:2145679T/CSMG6intron0.6751.023160.01790.20037
rs991260917:1967620T/CSMG6intron1.0001.029320.01230.018845
rs991378917:2050445C/GSMG6intron0.9930.945820.01182.396E-66
rs991410117:1981935A/GSMG6intron0.9940.978930.01090.050266
rs991426617:2133250T/CSMG6intron0.9831.065770.01121.342E-86
rs991457717:2005130T/CSMG6intron0.9970.958970.01320.0014724
rs991457817:2005136C/GSMG6intron0.9971.042790.01320.0014712b
rs991511217:2007826A/GSMG6intron0.9971.043520.01320.0012247
rs991632217:2063612T/CSMG6intron0.9910.946390.01172.322E-66
SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*

  Note: RegulomeDB score*
score supporting data score supporting data
1aeQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak6other
2aTF binding + matched TF motif + matched DNase Footprint + DNase peak5TF binding or DNase peak
1beQTL + TF binding + any motif + DNase Footprint + DNase peak4TF binding + DNase peak
2bTF binding + any motif + DNase Footprint + DNase peak3bTF binding + matched TF motif
1ceQTL + TF binding + matched TF motif + DNase peak1feQTL + TF binding / DNase peak
2cTF binding + matched TF motif + DNase peak3aTF binding + any motif + DNase peak
1deQTL + TF binding + any motif + DNase peak1eeQTL + TF binding + matched TF motif
CNV Information

The gene is not affected by CNV!

eQTL Information