Gene Symbol | SLC6A4 |
---|---|
Entrez Id | 6532 |
Position | chr17:28523376..28562954 |
Description | solute carrier family 6 (neurotransmitter transporter), member 4 |
Gene type | protein-coding |
SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
---|---|---|---|---|---|---|---|---|---|---|
rs11080121 | 17:28528842 | T/C | SLC6A4 | intron | 0.997 | 0.98138 | 0.0107 | 0.07788 | ![]() | 7 |
rs11080122 | 17:28547335 | T/C | SLC6A4 | intron | 0.997 | 0.99681 | 0.0137 | 0.813 | ![]() | 3a |
rs113464413 | 17:28557164 | A/G | SLC6A4 | intron | 0.685 | 0.97015 | 0.0135 | 0.02462 | ![]() | 6 |
rs11657536 | 17:28529242 | A/G | SLC6A4 | intron | 0.833 | 1.01674 | 0.0339 | 0.6245 | ![]() | 7 |
rs117390397 | 17:28561092 | A/T | SLC6A4 | intron | 0.670 | 0.96715 | 0.0411 | 0.4167 | ![]() | 5 |
rs118189300 | 17:28526585 | T/C | SLC6A4 | intron | 0.676 | 0.96822 | 0.0505 | 0.5226 | ![]() | 7 |
rs11872020 | 17:28553489 | A/G | SLC6A4 | intron | 0.921 | 0.96948 | 0.0115 | 0.006984 | ![]() | 4 |
rs12150214 | 17:28550888 | C/G | SLC6A4 | intron | 0.998 | 0.99700 | 0.0137 | 0.8284 | ![]() | 5 |
rs12449783 | 17:28527653 | A/C | SLC6A4 | intron | 1.000 | 0.98187 | 0.0106 | 0.08622 | ![]() | 5 |
rs12450956 | 17:28529025 | A/G | SLC6A4 | intron | 0.995 | 0.98167 | 0.0107 | 0.08317 | ![]() | 6 |
SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
score | supporting data | score | supporting data |
---|---|---|---|
1a | eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak | 6 | other |
2a | TF binding + matched TF motif + matched DNase Footprint + DNase peak | 5 | TF binding or DNase peak |
1b | eQTL + TF binding + any motif + DNase Footprint + DNase peak | 4 | TF binding + DNase peak |
2b | TF binding + any motif + DNase Footprint + DNase peak | 3b | TF binding + matched TF motif |
1c | eQTL + TF binding + matched TF motif + DNase peak | 1f | eQTL + TF binding / DNase peak |
2c | TF binding + matched TF motif + DNase peak | 3a | TF binding + any motif + DNase peak |
1d | eQTL + TF binding + any motif + DNase peak | 1e | eQTL + TF binding + matched TF motif |
Reference | Study type | Sample size |
---|---|---|
22118685 | GWAS | 235 cases; 191 controls |
Reference | Study type | Sample size |