SLC6A3

Basic Information

Gene Symbol	SLC6A3
Entrez Id	6531
Position	chr5:1392905..1445543
Description	solute carrier family 6 (neurotransmitter transporter), member 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10036478	5:1437898	T/C	SLC6A3	intron	0.964	0.98886	0.0113	0.3227		4
rs10040882	5:1418558	T/C	SLC6A3	intron	0.910	1.01238	0.0133	0.354		7
rs10051340	5:1426166	C/G	SLC6A3	intron	0.964	0.99074	0.0128	0.4709		6
rs10052016	5:1428111	A/G	SLC6A3	intron	0.947	0.99910	0.0125	0.9449		7
rs10053602	5:1428135	T/C	SLC6A3	intron	0.964	0.99035	0.0128	0.449		6
rs10063564	5:1438030	A/T	SLC6A3	intron	0.945	1.00965	0.0130	0.4589		5
rs10068876	5:1438042	A/G	SLC6A3	intron	0.945	1.00965	0.0130	0.4592		5
rs10069463	5:1395794	A/G	SLC6A3	intron	0.903	1.01806	0.0215	0.4056		5
rs10072809	5:1439748	A/G	SLC6A3	intron	0.867	1.02276	0.0246	0.3608		5
rs10074171	5:1408404	A/G	SLC6A3	intron	0.881	1.00310	0.0130	0.8097		6
rs1042098	5:1394815	A/G	SLC6A3	untranslated-3	0.906	1.00733	0.0129	0.5702		5
rs10475005	5:1425049	A/G	SLC6A3	intron	0.966	0.99035	0.0129	0.4497		5
rs10475006	5:1425235	A/G	SLC6A3	intron	0.964	0.99094	0.0128	0.4769		7
rs1048955	5:1438105	T/C	SLC6A3	intron	0.947	1.01755	0.0113	0.1228		5
rs111251175	5:1422762	T/C	SLC6A3	intron	0.776	0.98246	0.0146	0.2262		6
rs112796637	5:1408349	T/G	SLC6A3	intron	0.886	0.99840	0.0141	0.9092		7
rs114350483	5:1423184	A/C	SLC6A3	intron	0.671	1.00331	0.0255	0.8962		6
rs115076319	5:1423872	T/C	SLC6A3	intron	0.685	0.93951	0.0588	0.2886		6
rs11564762	5:1410613	T/G	SLC6A3	intron	0.871	0.99611	0.0143	0.7847		5
rs115804091	5:1399425	A/G	SLC6A3	intron	0.753	1.05897	0.0448	0.2004		5
rs116412595	5:1403486	T/C	SLC6A3	intron	0.875	1.00250	0.0230	0.9121		5
rs11737901	5:1430616	T/C	SLC6A3	intron	0.955	0.98285	0.0116	0.1349		5
rs11738968	5:1423134	A/C	SLC6A3	intron	0.780	1.00260	0.0128	0.841		6
rs12332091	5:1418745	C/G	SLC6A3	intron	0.910	1.01227	0.0133	0.3571		7
rs13161905	5:1417212	T/C	SLC6A3	intron	0.910	0.99045	0.0116	0.4065		5
rs1316830	5:1443990	T/C	SLC6A3	intron	0.869	1.00934	0.0131	0.4762		6
rs13189021	5:1442842	T/C	SLC6A3	intron	0.743	0.99980	0.0150	0.9902		5
rs141405009	5:1422764	C/G	SLC6A3	intron	0.741	1.00310	0.0155	0.8419		-
rs141592200	5:1414530	T/G	SLC6A3	intron	0.663	1.00975	0.0345	0.7788		-
rs142199704	5:1437990	A/C	SLC6A3	intron	0.662	1.02994	0.0365	0.4189		-
rs144782362	5:1431392	C/G	SLC6A3	intron	0.683	0.99074	0.0559	0.8675		-
rs145036607	5:1436077	A/G	SLC6A3	intron	0.730	0.92265	0.0431	0.06182		-
rs147053584	5:1406588	A/G	SLC6A3	intron	0.610	0.96464	0.0591	0.5427		-
rs148590368	5:1409502	T/C	SLC6A3	intron	0.770	1.04687	0.0460	0.3185		-
rs149312034	5:1417297	A/G	SLC6A3	intron	0.782	1.02306	0.0650	0.7254		-
rs150052082	5:1419007	T/C	SLC6A3	intron	0.816	0.98778	0.0343	0.7199		-
rs1614919	5:1422549	A/G	SLC6A3	intron	0.674	0.98718	0.0146	0.3773		5
rs187884410	5:1423002	A/G	SLC6A3	intron	0.629	1.03252	0.0225	0.1546		-
rs191434990	5:1423337	T/C	SLC6A3	intron	0.627	1.00020	0.0325	0.996		-
rs191435552	5:1422798	T/C	SLC6A3	intron	0.719	0.98521	0.0161	0.3559		-
rs192976109	5:1423141	A/G	SLC6A3	intron	0.608	1.04907	0.0355	0.1778		-
rs2042449	5:1416646	A/G	SLC6A3	intron	0.908	1.01238	0.0133	0.3559		4
rs2173947	5:1426959	A/G	SLC6A3	intron	0.964	0.99064	0.0128	0.4647		7
rs2245660	5:1409719	T/C	SLC6A3	intron	0.942	1.00000	0.0234	0.999		4
rs2254408	5:1442974	A/C	SLC6A3	intron	0.811	1.00632	0.0118	0.5922		5
rs2270914	5:1442979	T/C	SLC6A3	intron	0.829	1.00531	0.0135	0.6946		5
rs2455391	5:1443498	A/G	SLC6A3	intron	0.930	0.98620	0.0126	0.2698		4
rs246997	5:1440280	T/G	SLC6A3	intron	0.833	1.00190	0.0118	0.8746		5
rs250681	5:1428011	T/C	SLC6A3	intron	0.971	1.02102	0.0108	0.05347		7
rs250683	5:1426151	T/C	SLC6A3	intron	0.976	0.97902	0.0128	0.09736		7
rs250686	5:1425159	T/C	SLC6A3	intron	0.966	0.97941	0.0108	0.0547		6
rs2550936	5:1411256	A/C	SLC6A3	intron	0.862	1.00431	0.0130	0.7428		5
rs2617577	5:1410472	T/C	SLC6A3	intron	0.876	1.00572	0.0129	0.6602		5
rs2617605	5:1442521	T/C	SLC6A3	intron	0.879	0.99940	0.0118	0.9571		5
rs2652514	5:1442526	A/G	SLC6A3	intron	0.863	0.99531	0.0130	0.717		5
rs2652518	5:1429208	T/C	SLC6A3	intron	0.664	0.96928	0.0732	0.6696		5
rs2735917	5:1420268	A/C	SLC6A3	intron	0.828	1.00733	0.0247	0.769		5
rs28363089	5:1412971	A/G	SLC6A3	intron	0.619	1.05169	0.0551	0.3611		5
rs28363115	5:1405882	T/C	SLC6A3	intron	0.889	0.99661	0.0142	0.8122		5
rs28363119	5:1405694	T/C	SLC6A3	intron	0.953	1.00200	0.0225	0.9278		5
rs28363120	5:1405490	T/C	SLC6A3	intron	0.875	0.99481	0.0144	0.721		5
rs28363150	5:1400845	T/C	SLC6A3	intron	0.711	0.98886	0.0398	0.7776		5
rs28363151	5:1400750	A/G	SLC6A3	intron	0.838	1.03510	0.0231	0.1364		5
rs28363152	5:1400692	T/G	SLC6A3	intron	0.659	1.03417	0.0569	0.5551		5
rs28363164	5:1395113	T/C	SLC6A3	intron	0.724	0.98020	0.0400	0.6161		5
rs28363168	5:1394389	A/C	SLC6A3	untranslated-3	0.671	1.05580	0.0418	0.1933		5
rs28363174	5:1393038	A/G	SLC6A3	untranslated-3	0.666	1.05317	0.0418	0.2154		5
rs28363175	5:1393026	A/G	SLC6A3	untranslated-3	0.640	0.99750	0.0643	0.9695		5
rs28382221	5:1442757	T/C	SLC6A3	intron	0.655	1.01379	0.0240	0.5696		5
rs28382245	5:1420476	T/C	SLC6A3	intron	0.930	0.98413	0.0114	0.1606		5
rs28382246	5:1420382	A/T	SLC6A3	intron	0.907	1.01217	0.0133	0.3606		5
rs28382247	5:1420346	T/G	SLC6A3	intron	0.909	1.01227	0.0133	0.3561		5
rs28382248	5:1420306	A/G	SLC6A3	intron	0.900	1.01238	0.0134	0.3569		5
rs28382257	5:1415340	A/G	SLC6A3	intron	0.767	0.97132	0.0514	0.5715		5
rs28742608	5:1440934	T/G	SLC6A3	intron	0.887	0.98049	0.0240	0.4137		5
rs2927676	5:1440681	C/G	SLC6A3	intron	0.877	0.99601	0.0140	0.7763		5
rs2937638	5:1443973	T/G	SLC6A3	intron	0.906	1.00692	0.0144	0.6317		6
rs2937639	5:1443728	T/C	SLC6A3	intron	0.960	1.00300	0.0111	0.7845		5
rs2937640	5:1443604	T/C	SLC6A3	intron	0.923	0.99551	0.0112	0.6858		5
rs2963238	5:1444427	T/G	SLC6A3	intron	0.955	1.00441	0.0111	0.6903		4
rs2975223	5:1443603	T/C	SLC6A3	intron	0.922	1.00471	0.0112	0.6747		5
rs2975286	5:1423227	T/C	SLC6A3	intron	0.606	1.00180	0.0231	0.9364		7
rs2975292	5:1419932	C/G	SLC6A3	intron	0.911	1.00823	0.0116	0.4795		5
rs2981359	5:1442732	C/G	SLC6A3	intron	0.648	1.00260	0.0131	0.8435		5
rs365663	5:1428883	A/G	SLC6A3	intron	0.954	0.98551	0.0108	0.1763		5
rs378607	5:1422482	A/G	SLC6A3	intron	0.865	0.98324	0.0115	0.1418		5
rs3797200	5:1393344	T/C	SLC6A3	untranslated-3	0.884	0.99551	0.0131	0.7302		5
rs393795	5:1428514	T/G	SLC6A3	intron	0.987	1.02092	0.0127	0.1027		3a
rs403636	5:1438354	A/C	SLC6A3	intron	0.991	0.99840	0.0145	0.9125		5
rs41280377	5:1394476	A/G	SLC6A3	untranslated-3	0.742	0.90520	0.0464	0.03195		5
rs418265	5:1426416	A/G	SLC6A3	intron	0.971	0.98000	0.0108	0.06019		7
rs420422	5:1436408	T/C	SLC6A3	intron	0.957	0.98196	0.0108	0.09368		5
rs427284	5:1429187	C/G	SLC6A3	intron	0.987	1.02041	0.0127	0.1115		5
rs456774	5:1432202	C/G	SLC6A3	intron	0.983	1.01908	0.0126	0.1341		5
rs458632	5:1431302	A/G	SLC6A3	intron	0.990	0.98089	0.0127	0.1285		5
rs458860	5:1430933	A/T	SLC6A3	intron	0.990	1.01959	0.0127	0.1258		5
rs459141	5:1432042	T/C	SLC6A3	intron	0.991	1.01918	0.0127	0.133		5
rs460934	5:1431306	A/G	SLC6A3	intron	0.990	0.98098	0.0127	0.1285		5
rs461677	5:1431992	A/C	SLC6A3	intron	0.991	0.98118	0.0127	0.1328		5
rs461753	5:1431214	T/C	SLC6A3	intron	0.958	1.01847	0.0126	0.1464		5
rs462053	5:1431554	T/C	SLC6A3	intron	0.983	0.98324	0.0128	0.1859		5
rs463379	5:1431164	C/G	SLC6A3	intron	0.990	1.01949	0.0127	0.1269		5
rs464049	5:1423905	A/G	SLC6A3	intron	0.972	0.97951	0.0108	0.05423		7
rs465130	5:1432876	A/G	SLC6A3	intron	0.991	1.01918	0.0127	0.1337		5
rs487781	5:1433931	C/G	SLC6A3	intron	0.984	0.98157	0.0127	0.1428		5
rs4975547	5:1435972	A/G	SLC6A3	intron	0.882	1.01847	0.0137	0.1829		7
rs4975640	5:1414316	T/C	SLC6A3	intron	0.644	0.95352	0.0332	0.1518		5
rs4975641	5:1414523	T/G	SLC6A3	intron	0.625	1.00612	0.0160	0.7015		5
rs4975646	5:1433401	A/G	SLC6A3	intron	0.960	0.98324	0.0116	0.1428		1f
rs58923592	5:1414612	A/C	SLC6A3	intron	0.623	1.01136	0.0414	0.7848		5
rs60553822	5:1414537	A/G	SLC6A3	intron	0.607	0.97434	0.0257	0.3128		5
rs61696543	5:1425313	T/G	SLC6A3	intron	0.964	0.99084	0.0128	0.4763		7
rs62331084	5:1412605	T/C	SLC6A3	intron	0.761	0.99094	0.0141	0.5178		5
rs62331112	5:1424364	A/G	SLC6A3	intron	0.960	0.99114	0.0128	0.4858		5
rs62331115	5:1433272	A/C	SLC6A3	intron	0.957	1.01056	0.0129	0.4148		5
rs638577	5:1433831	T/C	SLC6A3	intron	0.984	0.98177	0.0127	0.1475		5
rs638964	5:1433867	T/C	SLC6A3	intron	0.984	1.01898	0.0127	0.1394		5
rs6869645	5:1404548	T/C	SLC6A3	intron	0.972	0.99770	0.0220	0.915		5
rs6876225	5:1406036	A/C	SLC6A3	intron	0.939	1.00130	0.0234	0.9556		5
rs6876890	5:1393878	A/G	SLC6A3	untranslated-3	0.824	0.98857	0.0144	0.4254		5
rs71595043	5:1423264	A/G	SLC6A3	intron	0.794	1.01461	0.0160	0.364		6
rs72715516	5:1395574	A/G	SLC6A3	intron	0.864	1.05401	0.0338	0.1199		5
rs72715517	5:1396291	A/G	SLC6A3	intron	0.718	0.98039	0.0462	0.6682		2b
rs72715518	5:1396763	A/C	SLC6A3	intron	0.705	1.03448	0.0474	0.474		5
rs72715519	5:1397115	C/G	SLC6A3	intron	0.704	0.96696	0.0474	0.4788		5
rs72715526	5:1408227	A/T	SLC6A3	intron	0.888	1.00401	0.0142	0.7789		7
rs72715534	5:1426267	T/G	SLC6A3	intron	0.894	1.00833	0.0243	0.731		7
rs75701356	5:1430565	T/C	SLC6A3	intron	0.785	0.98354	0.0324	0.6089		5
rs76839624	5:1413660	T/C	SLC6A3	intron	0.714	0.97814	0.0459	0.6305		4
rs8179029	5:1409985	T/C	SLC6A3	intron	0.882	0.99521	0.0143	0.7361		5
rs9312865	5:1435840	A/G	SLC6A3	intron	0.913	0.98975	0.0131	0.4317		5
rs9312866	5:1436102	A/G	SLC6A3	intron	0.948	1.01248	0.0131	0.3429		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
22196331	GWAS	177 cases; 436 controls
Reference	Study type	Sample size

eQTL Information