Gene Symbol | SLC1A2 |
---|---|
Entrez Id | 6506 |
Position | chr11:35272752..35441532 |
Description | solute carrier family 1 (glial high affinity glutamate transporter), member 2 |
Gene type | protein-coding |
SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
---|---|---|---|---|---|---|---|---|---|---|
rs1001525 | 11:35434662 | A/T | SLC1A2 | intron | 0.967 | 1.00894 | 0.0150 | 0.5533 | ![]() | 6 |
rs1042113 | 11:35308369 | T/C | SLC1A2 | coding-synon | 1.000 | 1.00250 | 0.0121 | 0.8346 | ![]() | 7 |
rs1043101 | 11:35274829 | A/G | SLC1A2 | untranslated-3 | 0.998 | 1.00371 | 0.0107 | 0.7269 | ![]() | 5 |
rs10444271 | 11:35289757 | T/C | SLC1A2 | intron | 1.000 | 1.00421 | 0.0129 | 0.7428 | ![]() | 6 |
rs10488815 | 11:35286768 | A/G | SLC1A2 | intron | 0.726 | 1.03076 | 0.0568 | 0.5936 | ![]() | 7 |
rs10488816 | 11:35311418 | T/C | SLC1A2 | intron | 1.000 | 1.00321 | 0.0121 | 0.7935 | ![]() | 4 |
rs10488817 | 11:35312145 | A/T | SLC1A2 | intron | 1.000 | 0.99690 | 0.0121 | 0.7953 | ![]() | 7 |
rs10488818 | 11:35312380 | T/C | SLC1A2 | intron | 1.000 | 0.99661 | 0.0121 | 0.7808 | ![]() | 5 |
rs10501137 | 11:35430288 | T/C | SLC1A2 | intron | 0.999 | 1.00230 | 0.0109 | 0.8343 | ![]() | 6 |
rs10501138 | 11:35430439 | T/C | SLC1A2 | intron | 0.999 | 1.00230 | 0.0109 | 0.8332 | ![]() | 7 |
SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
score | supporting data | score | supporting data |
---|---|---|---|
1a | eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak | 6 | other |
2a | TF binding + matched TF motif + matched DNase Footprint + DNase peak | 5 | TF binding or DNase peak |
1b | eQTL + TF binding + any motif + DNase Footprint + DNase peak | 4 | TF binding + DNase peak |
2b | TF binding + any motif + DNase Footprint + DNase peak | 3b | TF binding + matched TF motif |
1c | eQTL + TF binding + matched TF motif + DNase peak | 1f | eQTL + TF binding / DNase peak |
2c | TF binding + matched TF motif + DNase peak | 3a | TF binding + any motif + DNase peak |
1d | eQTL + TF binding + any motif + DNase peak | 1e | eQTL + TF binding + matched TF motif |
The gene is not affected by CNV!