SGSM2

Basic Information

Gene Symbol	SGSM2
Entrez Id	9905
Position	chr17:2240806..2284348
Description	small G protein signaling modulator 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs111335664	17:2242821	A/G	SGSM2	intron	0.942	0.98147	0.0125	0.1364		6
rs111633620	17:2253763	A/G	SGSM2	intron	0.926	1.04582	0.0250	0.07315		6
rs111743509	17:2265748	T/C	SGSM2	intron	0.915	1.02051	0.0114	0.07412		5
rs112311603	17:2242586	C/G	SGSM2	intron,near-gene-5	0.949	0.98314	0.0125	0.1745		7
rs112733009	17:2242494	A/G	SGSM2	intron,near-gene-5	0.946	1.01786	0.0126	0.1609		7
rs113461397	17:2240878	T/C	SGSM2	near-gene-5,untranslated-5	0.809	1.06663	0.0273	0.01817		2b
rs113584235	17:2247736	T/C	SGSM2	intron	0.837	0.87564	0.0559	0.01747		4
rs113726801	17:2244080	A/G	SGSM2	intron	0.689	0.99213	0.0595	0.8945		7
rs117333460	17:2277929	A/G	SGSM2	intron	0.843	1.03221	0.0543	0.5592		5
rs117713123	17:2268594	A/G	SGSM2	missense	0.831	0.99084	0.0613	0.8802		5
rs118036039	17:2264163	T/C	SGSM2	intron	0.685	0.99481	0.0378	0.891		7
rs12451892	17:2247982	T/C	SGSM2	intron	1.010	0.98758	0.0108	0.249		5
rs12602246	17:2273581	C/G	SGSM2	intron,ncRNA	0.904	1.02214	0.0278	0.4319		5
rs137886066	17:2251246	T/C	SGSM2	intron	0.749	1.06684	0.0359	0.07105		-
rs139735341	17:2262060	A/G	SGSM2	intron	0.696	0.93267	0.0567	0.2194		-
rs140941338	17:2244168	A/G	SGSM2	intron	0.811	0.99154	0.0377	0.8207		-
rs141888875	17:2241289	A/G	SGSM2	intron,near-gene-5	0.710	1.08253	0.0279	0.004482		-
rs142427065	17:2267873	A/G	SGSM2	intron	0.607	1.07455	0.0610	0.2385		-
rs142769156	17:2244085	A/G	SGSM2	intron	0.925	1.00250	0.0202	0.9032		-
rs144938714	17:2243056	T/C	SGSM2	intron	0.810	0.99104	0.0308	0.7696		-
rs146419648	17:2264249	A/C	SGSM2	intron	0.817	1.00985	0.0263	0.7098		-
rs146784024	17:2249272	T/C	SGSM2	intron	0.959	0.99283	0.0198	0.7163		-
rs147296442	17:2274785	T/C	SGSM2	intron,near-gene-5	0.607	1.02183	0.0605	0.7215		-
rs150377492	17:2243934	A/C	SGSM2	intron	0.864	0.90955	0.0497	0.05641		-
rs16952099	17:2264023	T/C	SGSM2	intron	0.982	1.04352	0.0259	0.1003		6
rs16952104	17:2264479	A/G	SGSM2	intron	0.955	1.01420	0.0214	0.508		7
rs16952108	17:2264569	A/G	SGSM2	intron	0.949	1.00552	0.0246	0.8241		7
rs1801761	17:2284298	T/C	SGSM2	untranslated-3	0.772	1.01806	0.0482	0.711		4
rs186816291	17:2241681	T/C	SGSM2	intron,near-gene-5	0.795	1.10219	0.0558	0.08142		-
rs189291173	17:2256227	A/G	SGSM2	intron	0.750	0.94582	0.0142	0.00008577		-
rs190947014	17:2260304	T/C	SGSM2	intron	0.632	0.98472	0.0428	0.719		-
rs192728102	17:2244111	T/C	SGSM2	intron	0.630	1.06940	0.0654	0.3049		-
rs1984749	17:2249904	T/C	SGSM2	intron	0.991	1.03852	0.0111	0.0006165		4
rs216211	17:2242417	A/G	SGSM2	intron,near-gene-5	0.941	0.96252	0.0124	0.002131		6
rs2248821	17:2268311	A/G	SGSM2	missense	1.000	1.01704	0.0106	0.1107		5
rs2286881	17:2267694	T/C	SGSM2	intron	0.917	0.99302	0.0134	0.6032		5
rs2290924	17:2284702	A/G	SGSM2	near-gene-3	0.946	1.00823	0.0233	0.7254		4
rs2290925	17:2283888	T/C	SGSM2	untranslated-3	0.944	1.00874	0.0235	0.7105		5
rs2302470	17:2276432	T/C	SGSM2	intron	0.768	1.01248	0.0164	0.4512		5
rs2429900	17:2247599	T/C	SGSM2	intron	0.876	1.04530	0.0273	0.1048		3a
rs2429901	17:2254321	T/C	SGSM2	intron	0.969	0.97190	0.0108	0.008026		7
rs2429904	17:2260362	T/C	SGSM2	intron	0.982	0.96977	0.0107	0.003976		7
rs2429905	17:2264774	T/C	SGSM2	intron	0.915	1.03159	0.0121	0.01011		5
rs2429906	17:2265113	A/C	SGSM2	intron	0.986	1.02163	0.0108	0.04758		5
rs2429908	17:2268681	T/C	SGSM2	intron	1.000	0.98364	0.0106	0.1205		5
rs2429909	17:2270284	A/G	SGSM2	intron	0.986	1.02245	0.0108	0.04102		5
rs2429910	17:2270777	T/C	SGSM2	intron	0.977	0.98541	0.0107	0.1707		5
rs2429911	17:2272057	T/C	SGSM2	intron	0.815	1.05432	0.0429	0.2177		2b
rs2429912	17:2273064	A/G	SGSM2	intron	0.944	1.02716	0.0109	0.01386		4
rs2429913	17:2273171	A/G	SGSM2	intron	0.938	1.02675	0.0110	0.0161		4
rs2429914	17:2277668	T/C	SGSM2	intron	0.970	0.98167	0.0108	0.08608		5
rs2447087	17:2253793	A/G	SGSM2	intron	0.965	1.02727	0.0108	0.01253		7
rs2447088	17:2254273	A/G	SGSM2	intron	0.987	1.02245	0.0108	0.03956		6
rs2447089	17:2254376	T/C	SGSM2	intron	0.983	0.96909	0.0107	0.003177		7
rs2447097	17:2278064	T/G	SGSM2	intron	0.989	0.98541	0.0107	0.1684		5
rs2447098	17:2277720	A/C	SGSM2	intron	0.973	1.01796	0.0107	0.09791		5
rs2447099	17:2268139	C/G	SGSM2	intron	0.994	1.02521	0.0106	0.01885		5
rs2447100	17:2265801	A/G	SGSM2	intron	0.897	0.97336	0.0116	0.01973		5
rs2447102	17:2264794	A/G	SGSM2	intron	0.919	1.03066	0.0121	0.01253		5
rs2447103	17:2262997	A/C	SGSM2	intron	0.981	0.96986	0.0107	0.00422		2b
rs2447104	17:2257532	T/C	SGSM2	intron	0.975	1.03293	0.0107	0.002505		7
rs2447105	17:2257626	A/G	SGSM2	intron	0.963	1.03427	0.0108	0.001802		7
rs2447106	17:2257819	A/T	SGSM2	intron	0.983	1.03272	0.0107	0.002563		5
rs2447107	17:2257864	A/G	SGSM2	intron	0.983	0.96831	0.0107	0.002564		5
rs2447108	17:2257993	T/C	SGSM2	intron	0.983	1.03283	0.0107	0.002452		5
rs2447110	17:2261677	A/G	SGSM2	intron	0.990	0.97045	0.0107	0.004822		6
rs2447111	17:2252101	A/C	SGSM2	intron	0.912	1.02778	0.0118	0.01998		7
rs2926992	17:2256026	A/C	SGSM2	intron	0.994	1.02276	0.0107	0.03644		7
rs3101409	17:2258147	T/C	SGSM2	intron	0.968	1.03407	0.0107	0.001819		7
rs3213712	17:2275734	C/G	SGSM2	coding-synon,near-gene-5	0.926	0.97453	0.0192	0.1799		5
rs3213713	17:2275844	T/C	SGSM2	intron,near-gene-5	0.934	0.97707	0.0191	0.2247		5
rs3213714	17:2276085	T/G	SGSM2	intron	0.943	1.02061	0.0189	0.2803		5
rs35257150	17:2253239	A/G	SGSM2	intron	0.960	1.02932	0.0108	0.007445		7
rs35280661	17:2253468	A/G	SGSM2	intron	0.971	1.02624	0.0109	0.01758		6
rs35861686	17:2265944	T/C	SGSM2	intron	0.960	0.98659	0.0211	0.5234		3a
rs3815469	17:2241311	A/G	SGSM2	intron,near-gene-5	0.949	1.01654	0.0127	0.1983		2b
rs4790075	17:2243581	T/C	SGSM2	intron	0.930	1.04289	0.0125	0.0007775		6
rs4790076	17:2243628	T/C	SGSM2	intron	0.888	0.99124	0.0145	0.5453		7
rs4790328	17:2252534	A/G	SGSM2	intron	0.872	0.96899	0.0124	0.01085		7
rs4790329	17:2252628	T/C	SGSM2	intron	0.868	0.96928	0.0119	0.008618		7
rs4790332	17:2262611	A/G	SGSM2	intron	0.996	1.02153	0.0107	0.04545		3a
rs4790333	17:2262703	T/C	SGSM2	intron	0.997	1.02112	0.0107	0.04942		4
rs58616245	17:2283775	A/T	SGSM2	untranslated-3	0.943	1.00803	0.0235	0.7331		4
rs58713812	17:2275017	T/C	SGSM2	intron,near-gene-5	0.921	0.97775	0.0180	0.2118		4
rs59348778	17:2283668	C/G	SGSM2	untranslated-3	0.942	0.99213	0.0235	0.7372		4
rs59977917	17:2277834	A/G	SGSM2	intron	0.911	0.98560	0.0248	0.5591		5
rs60064574	17:2262462	T/C	SGSM2	intron	0.975	1.04770	0.0261	0.07431		5
rs60072521	17:2283667	A/G	SGSM2	untranslated-3	0.942	1.00793	0.0235	0.7374		4
rs60786249	17:2264215	T/C	SGSM2	intron	0.960	1.01025	0.0211	0.6293		7
rs61490447	17:2274989	A/G	SGSM2	intron,near-gene-5	0.933	1.01857	0.0180	0.3056		2b
rs61576608	17:2243136	A/C	SGSM2	intron	0.953	1.01177	0.0111	0.2921		5
rs61741902	17:2282779	A/G	SGSM2	missense	0.731	1.00331	0.0507	0.9488		5
rs62067003	17:2252369	A/G	SGSM2	intron	0.836	1.02071	0.0268	0.445		6
rs62067013	17:2265276	T/C	SGSM2	intron	0.957	0.99720	0.0239	0.9084		5
rs62067014	17:2265592	A/G	SGSM2	intron	0.960	1.01339	0.0211	0.5302		5
rs62067017	17:2274869	A/G	SGSM2	intron,near-gene-5	0.903	1.01816	0.0280	0.5192		5
rs62067018	17:2274873	T/C	SGSM2	intron,near-gene-5	0.903	0.98216	0.0280	0.5195		5
rs62067023	17:2282839	T/C	SGSM2	untranslated-3	0.945	1.01086	0.0242	0.6569		5
rs66647248	17:2283299	A/G	SGSM2	untranslated-3	0.947	1.01096	0.0242	0.6513		5
rs67398811	17:2256102	T/C	SGSM2	intron	0.773	1.03884	0.0131	0.003777		7
rs67427319	17:2253441	C/G	SGSM2	intron	0.971	0.97443	0.0109	0.01728		7
rs67887169	17:2256828	A/G	SGSM2	intron	0.986	1.03221	0.0106	0.002875		5
rs71362309	17:2256111	A/G	SGSM2	intron	0.762	1.03832	0.0137	0.006202		7
rs7210932	17:2272024	T/C	SGSM2	intron	0.977	1.01542	0.0107	0.1542		2b
rs72824330	17:2248331	A/C	SGSM2	intron	0.973	0.99382	0.0157	0.6928		7
rs72824333	17:2251885	A/G	SGSM2	intron	0.944	0.99850	0.0156	0.9246		2b
rs73296248	17:2256685	T/G	SGSM2	intron	0.935	1.05380	0.0251	0.03703		4
rs73296256	17:2261551	A/G	SGSM2	intron	0.966	1.05169	0.0261	0.05343		7
rs73296283	17:2268392	T/G	SGSM2	intron	0.967	1.04781	0.0261	0.07328		5
rs73296287	17:2274378	A/G	SGSM2	intron,near-gene-5	0.903	1.01837	0.0279	0.5144		5
rs73303078	17:2243721	A/G	SGSM2	intron	0.946	0.98246	0.0125	0.1565		6
rs73303080	17:2249919	A/T	SGSM2	intron	0.978	1.00924	0.0125	0.461		4
rs73303084	17:2252204	T/C	SGSM2	intron	0.852	0.96435	0.0245	0.1379		6
rs74559599	17:2273635	T/G	SGSM2	intron,ncRNA	0.903	1.02316	0.0278	0.4104		5
rs75340970	17:2256261	T/C	SGSM2	intron	0.958	1.02583	0.0110	0.02053		4
rs75695549	17:2273727	T/C	SGSM2	intron,ncRNA	0.904	0.98118	0.0279	0.4965		5
rs75767388	17:2272345	T/G	SGSM2	intron	0.920	0.94686	0.0448	0.2235		5
rs80287354	17:2252490	T/C	SGSM2	intron	0.871	1.01715	0.0241	0.4806		6
rs8067779	17:2265913	A/G	SGSM2	intron	0.959	0.98570	0.0212	0.4983		4
rs8073644	17:2266055	T/C	SGSM2	intron	0.956	1.01369	0.0213	0.5236		2b
rs8076193	17:2263416	A/C	SGSM2	intron	0.942	0.98580	0.0229	0.5321		5
rs8080303	17:2252563	C/G	SGSM2	intron	0.885	0.98482	0.0114	0.1778		6
rs8080308	17:2252571	A/G	SGSM2	intron	0.865	0.98560	0.0116	0.2111		7
rs8081314	17:2252496	T/C	SGSM2	intron	0.910	0.98030	0.0140	0.1568		7
rs898750	17:2255193	A/G	SGSM2	intron	0.990	0.96977	0.0106	0.003804		7
rs9303051	17:2256172	T/C	SGSM2	intron	0.741	1.04802	0.0148	0.00158		7
rs9895347	17:2256323	A/G	SGSM2	intron	0.936	1.03552	0.0110	0.001486		2b
rs9896775	17:2256194	A/C	SGSM2	intron	0.744	1.04592	0.0154	0.003654		6
rs9903124	17:2256069	T/C	SGSM2	intron	0.887	0.97074	0.0113	0.008943		6
rs9903419	17:2256218	T/C	SGSM2	intron	0.746	0.95753	0.0151	0.004054		7
rs9910250	17:2254541	A/G	SGSM2	intron	0.920	0.95667	0.0247	0.07344		7
rs9915206	17:2254137	T/C	SGSM2	intron	0.935	0.95104	0.0251	0.04525		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information