SCAF1

Basic Information

Gene Symbol	SCAF1
Entrez Id	58506
Position	chr19:50145382..50161906
Description	SR-related CTD-associated factor 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10401743	19:50156896	T/C	SCAF1	coding-synon	0.729	1.02511	0.0250	0.3205		2b
rs10415600	19:50158913	A/G	SCAF1	intron	0.940	0.94308	0.0126	3.04E-6		7
rs118117859	19:50159143	T/G	SCAF1	intron	0.826	0.97443	0.0355	0.4657		7
rs12104272	19:50148052	A/G	SCAF1	intron	0.958	0.95123	0.0116	0.00001573		1f
rs12976076	19:50154408	T/C	SCAF1	coding-synon	0.832	1.01319	0.0311	0.6737		5
rs139826768	19:50158703	A/C	SCAF1	intron	0.797	0.94971	0.0553	0.3507		-
rs143863560	19:50158397	T/C	SCAF1	intron	0.751	0.97629	0.0576	0.6772		-
rs147079635	19:50150596	T/C	SCAF1	intron	0.731	0.88223	0.0489	0.01037		-
rs149807892	19:50159756	T/C	SCAF1	intron	0.749	1.04144	0.0553	0.4633		-
rs186765168	19:50156733	A/G	SCAF1	coding-synon	0.686	0.99521	0.0497	0.9226		-
rs2082481	19:50151226	A/G	SCAF1	intron	0.931	0.94488	0.0126	7.005E-6		6
rs34074594	19:50149269	A/G	SCAF1	intron	0.815	0.98610	0.0213	0.5122		1f
rs35272206	19:50162221	T/G	SCAF1	near-gene-3	0.854	1.03832	0.0181	0.0374		5
rs45513592	19:50149813	T/G	SCAF1	missense	0.616	0.99661	0.0600	0.9548		5
rs61743199	19:50161091	A/G	SCAF1	missense	0.653	1.00381	0.0266	0.8877		5
rs7258381	19:50153041	T/C	SCAF1	intron	0.945	0.93679	0.0191	0.0006389		5
rs7259683	19:50153332	T/C	SCAF1	intron	0.942	1.05897	0.0125	4.851E-6		5
rs73060070	19:50148261	A/C	SCAF1	intron	0.871	0.94923	0.0173	0.0026		5
rs73934025	19:50153686	A/C	SCAF1	intron	0.945	0.93763	0.0190	0.0007143		5
rs76387513	19:50161265	T/G	SCAF1	intron	0.653	0.99621	0.0266	0.8872		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information