SATB2

Basic Information

Gene Symbol	SATB2
Entrez Id	23314
Position	chr2:200134223..200335989
Description	SATB homeobox 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1014497	2:200241229	T/C	SATB2	intron	0.997	1.01898	0.0124	0.1283		4
rs10153805	2:200213060	A/G	SATB2	intron	0.996	0.94563	0.0167	0.0007924		6
rs10177011	2:200209588	T/C	SATB2	intron	0.997	1.05823	0.0167	0.0006854		7
rs10177591	2:200145184	T/C	SATB2	intron	0.997	1.04970	0.0168	0.003898		7
rs10192948	2:200145750	A/T	SATB2	intron	0.995	1.05117	0.0169	0.003113		7
rs10194229	2:200173141	A/G	SATB2	intron	1.000	0.94639	0.0166	0.0009405		5
rs10200842	2:200145071	A/G	SATB2	intron	0.997	0.95151	0.0168	0.003147		6
rs10206384	2:200277043	A/G	SATB2	intron	0.993	1.01623	0.0124	0.194		5
rs1037135	2:200194188	A/C	SATB2	intron	0.988	0.98196	0.0125	0.145		6
rs10445789	2:200149356	T/C	SATB2	intron	0.996	0.95476	0.0168	0.005769		6
rs10460398	2:200214742	T/C	SATB2	intron	1.000	0.92515	0.0159	9.98E-7		7
rs10497831	2:200142649	A/G	SATB2	intron	0.998	0.95218	0.0168	0.003566		5
rs10497832	2:200166936	C/G	SATB2	intron	1.000	1.05559	0.0166	0.001097		6
rs10497835	2:200226313	A/G	SATB2	intron	0.988	1.05717	0.0166	0.0008294		7
rs10497836	2:200288718	T/C	SATB2	intron	0.989	1.01481	0.0120	0.2236		5
rs10931863	2:200236967	T/C	SATB2	intron	0.995	1.05096	0.0163	0.002218		6
rs10931865	2:200265471	T/C	SATB2	intron	0.995	1.04928	0.0163	0.003074		6
rs112465080	2:200146007	A/G	SATB2	intron	0.898	1.05401	0.0173	0.002347		6
rs112535104	2:200239651	T/C	SATB2	intron	0.766	0.92210	0.0316	0.01028		7
rs114124633	2:200278278	T/C	SATB2	intron	0.616	0.92784	0.0633	0.2371		7
rs114158174	2:200223582	A/C	SATB2	intron	0.843	1.02963	0.0435	0.5011		7
rs114405014	2:200136303	A/C	SATB2	untranslated-3	0.960	0.91393	0.0451	0.0462		7
rs114447762	2:200222761	T/C	SATB2	intron	0.869	1.02634	0.0306	0.3964		7
rs114811873	2:200291995	C/G	SATB2	intron	0.719	1.03572	0.0509	0.4905		5
rs114828316	2:200305398	T/C	SATB2	intron	0.924	1.05243	0.0295	0.08381		5
rs115164329	2:200296238	T/C	SATB2	intron	0.948	1.06354	0.0618	0.3191		7
rs115556215	2:200261404	T/C	SATB2	intron	0.810	0.95228	0.0622	0.4316		7
rs116018339	2:200220756	A/G	SATB2	intron	0.614	0.92422	0.0634	0.2144		7
rs116442814	2:200237986	A/G	SATB2	intron	0.921	0.96551	0.0397	0.3766		7
rs116626789	2:200263486	A/G	SATB2	intron	0.849	1.08285	0.0330	0.01581		6
rs116730692	2:200296451	A/G	SATB2	intron	0.925	1.00431	0.0352	0.9031		4
rs12052310	2:200267305	C/G	SATB2	intron	0.999	0.92904	0.0160	4.348E-6		7
rs12052451	2:200314206	T/G	SATB2	intron	0.968	0.92914	0.0159	3.643E-6		6
rs12105045	2:200142635	T/C	SATB2	intron	0.998	0.95085	0.0168	0.002753		5
rs12105988	2:200197340	T/C	SATB2	intron	0.992	0.94488	0.0168	0.0007189		7
rs12478559	2:200230372	T/C	SATB2	intron	0.984	1.01745	0.0124	0.1631		6
rs12611848	2:200232843	A/T	SATB2	intron	0.995	1.05117	0.0163	0.002144		6
rs12614117	2:200202272	A/G	SATB2	intron	0.992	0.94488	0.0168	0.0007126		6
rs12616011	2:200313235	T/C	SATB2	intron	0.976	0.97278	0.0143	0.05317		6
rs12618312	2:200154177	T/C	SATB2	intron	1.000	0.95075	0.0164	0.002121		7
rs12618905	2:200194977	T/C	SATB2	intron	1.000	1.08004	0.0158	1.182E-6		7
rs12992313	2:200267033	A/G	SATB2	intron	0.995	1.01664	0.0124	0.1816		6
rs13002186	2:200189480	T/C	SATB2	intron	1.000	1.07961	0.0159	1.426E-6		7
rs13005579	2:200309455	C/G	SATB2	intron	0.969	0.92765	0.0157	1.649E-6		7
rs13014796	2:200321050	A/G	SATB2	intron	0.832	0.99730	0.0157	0.8639		4
rs13026246	2:200277391	A/G	SATB2	intron	0.998	0.92821	0.0160	3.345E-6		6
rs13028839	2:200235352	A/G	SATB2	intron	0.994	0.92645	0.0175	0.00001278		5
rs13035409	2:200293924	C/G	SATB2	intron	0.999	1.07681	0.0160	3.908E-6		7
rs13392032	2:200309493	C/G	SATB2	intron	0.978	1.02480	0.0141	0.08322		7
rs13392193	2:200201613	A/G	SATB2	intron	0.992	0.94450	0.0168	0.0006605		5
rs13397495	2:200251089	T/C	SATB2	intron	0.996	1.05022	0.0163	0.002563		7
rs13399622	2:200145843	A/G	SATB2	intron	0.997	1.05075	0.0168	0.003261		6
rs13400686	2:200289152	A/G	SATB2	intron	0.983	0.95916	0.0151	0.005845		7
rs13415419	2:200151807	A/T	SATB2	intron	0.996	1.05169	0.0164	0.002158		5
rs13419333	2:200169527	A/G	SATB2	intron	1.000	0.94639	0.0167	0.0009446		6
rs13426349	2:200198964	T/C	SATB2	intron	1.000	1.07885	0.0158	1.605E-6		7
rs13426462	2:200199050	T/C	SATB2	intron	0.992	1.05950	0.0168	0.0005639		7
rs1348812	2:200236425	A/G	SATB2	intron	1.010	0.92617	0.0159	1.323E-6		5
rs1348813	2:200245245	C/G	SATB2	intron	0.997	0.98108	0.0124	0.122		6
rs1374355	2:200156193	A/T	SATB2	intron	1.000	1.05117	0.0165	0.002513		6
rs1374356	2:200201571	T/C	SATB2	intron	1.000	1.07961	0.0158	1.327E-6		5
rs1374357	2:200201605	A/G	SATB2	intron	1.000	0.92626	0.0158	1.351E-6		5
rs1374359	2:200269339	T/C	SATB2	intron	0.994	1.04970	0.0162	0.002769		7
rs1374361	2:200170734	A/G	SATB2	intron	1.000	1.05464	0.0166	0.001338		5
rs137887406	2:200300342	T/C	SATB2	intron	0.768	1.02809	0.0422	0.5118		-
rs139499212	2:200274212	T/C	SATB2	intron	0.811	1.04928	0.0623	0.4395		-
rs139916397	2:200145883	A/G	SATB2	intron	0.901	1.01796	0.0310	0.5664		-
rs140878661	2:200135319	C/G	SATB2	untranslated-3	0.707	1.06109	0.0425	0.1629		-
rs141541918	2:200302437	C/G	SATB2	intron	0.628	1.19184	0.0632	0.005534		-
rs141579127	2:200175563	T/C	SATB2	intron	0.925	0.99223	0.0466	0.8665		-
rs143224348	2:200145410	A/G	SATB2	intron	0.927	1.00180	0.0243	0.9413		-
rs143279123	2:200317757	T/C	SATB2	intron	0.873	0.96735	0.0577	0.5649		-
rs1446637	2:200160277	A/C	SATB2	intron	1.000	0.94781	0.0166	0.001215		7
rs1446638	2:200162370	A/G	SATB2	intron	0.859	1.01735	0.0306	0.5742		6
rs145389103	2:200251165	T/C	SATB2	intron	0.809	0.95209	0.0621	0.4291		-
rs146230851	2:200266964	C/G	SATB2	intron	0.897	1.00180	0.0260	0.9463		-
rs147074068	2:200321954	T/C	SATB2	intron	0.680	0.96175	0.0546	0.4757		-
rs147964722	2:200147875	T/C	SATB2	intron	0.905	1.00844	0.0242	0.7295		-
rs150378775	2:200158353	A/G	SATB2	intron	0.916	1.00310	0.0249	0.9013		-
rs150654982	2:200176760	A/T	SATB2	intron	0.876	1.03056	0.0356	0.3976		-
rs150705690	2:200162349	T/C	SATB2	intron	0.851	0.88409	0.0575	0.03214		-
rs150757041	2:200204210	A/G	SATB2	intron	0.845	0.95562	0.0387	0.2414		-
rs150912592	2:200213146	C/G	SATB2	intron	0.856	0.91138	0.0570	0.1032		-
rs151025952	2:200228089	T/C	SATB2	intron	0.658	0.89360	0.0597	0.05962		-
rs1542182	2:200220394	A/G	SATB2	intron	1.000	1.08004	0.0159	1.236E-6		7
rs1542241	2:200300924	A/C	SATB2	intron	0.984	0.98324	0.0121	0.1616		6
rs1542242	2:200294969	A/G	SATB2	intron	0.988	1.01582	0.0120	0.1937		6
rs1542243	2:200295114	A/G	SATB2	intron	0.988	0.98452	0.0120	0.1939		5
rs16831252	2:200170530	T/C	SATB2	intron	0.997	1.08112	0.0159	9.506E-7		6
rs16831358	2:200228543	T/C	SATB2	intron	0.993	0.92728	0.0175	0.00001571		7
rs16831366	2:200228996	T/G	SATB2	intron	0.914	1.00692	0.0189	0.7159		3a
rs16831370	2:200231047	C/G	SATB2	intron	0.902	1.00060	0.0259	0.9813		5
rs16831496	2:200296710	C/G	SATB2	intron	0.846	0.98128	0.0225	0.4017		4
rs16831510	2:200305460	T/G	SATB2	intron	0.977	0.92339	0.0163	9.739E-7		7
rs17196295	2:200152198	A/G	SATB2	intron	0.911	0.98216	0.0121	0.1362		6
rs17197938	2:200200185	T/C	SATB2	intron	0.961	0.97814	0.0130	0.08848		7
rs17198127	2:200204111	A/G	SATB2	intron	0.913	1.01420	0.0219	0.5205		6
rs17198959	2:200236412	T/C	SATB2	intron	0.880	1.04561	0.0265	0.09273		5
rs17199092	2:200238130	C/G	SATB2	intron	0.874	0.97346	0.0356	0.4501		7
rs17199393	2:200246698	A/G	SATB2	intron	0.894	1.00060	0.0251	0.9821		5
rs17199540	2:200254002	A/T	SATB2	intron	0.864	1.06343	0.0311	0.04816		5
rs17199709	2:200258783	T/C	SATB2	intron	0.722	1.02573	0.0589	0.6668		6
rs17200971	2:200298752	A/T	SATB2	intron	0.871	1.02716	0.0356	0.4507		7
rs17249384	2:200140451	A/G	SATB2	intron	0.856	1.01359	0.0303	0.6555		7
rs17250955	2:200195522	A/G	SATB2	intron	0.834	0.92367	0.0331	0.01658		7
rs17251748	2:200221987	T/C	SATB2	intron	0.919	0.98354	0.0215	0.4402		7
rs17252512	2:200244975	A/C	SATB2	intron	0.853	0.92617	0.0328	0.01937		6
rs17265387	2:200249002	T/C	SATB2	intron	0.952	0.97395	0.0131	0.04374		7
rs17266097	2:200275209	T/C	SATB2	intron	0.956	1.02173	0.0111	0.05153		7
rs183039209	2:200235522	T/C	SATB2	intron	0.616	1.18317	0.0690	0.01479		-
rs186435790	2:200256134	T/C	SATB2	intron	0.679	0.95657	0.0448	0.3215		-
rs186582304	2:200205840	A/T	SATB2	intron	0.792	1.07605	0.0455	0.1066		-
rs187192815	2:200250058	T/C	SATB2	intron	0.647	0.86062	0.0494	0.002376		-
rs187223224	2:200313525	T/G	SATB2	intron	0.604	0.99641	0.0680	0.9578		-
rs193177108	2:200312614	T/C	SATB2	intron	0.808	0.98649	0.0706	0.8474		-
rs1992949	2:200290205	T/C	SATB2	intron	0.775	1.03004	0.0417	0.4787		7
rs1992950	2:200290359	A/G	SATB2	intron	0.985	1.01715	0.0121	0.158		6
rs2121378	2:200194271	T/C	SATB2	intron	1.000	1.07875	0.0159	1.77E-6		5
rs2167006	2:200231736	A/T	SATB2	intron	1.000	0.92672	0.0159	1.704E-6		7
rs2305262	2:200246318	T/C	SATB2	intron	0.996	0.98206	0.0124	0.1442		6
rs2345728	2:200268635	T/C	SATB2	intron	0.994	1.04991	0.0162	0.002679		7
rs2345729	2:200294206	T/G	SATB2	intron	0.987	0.98452	0.0120	0.1962		6
rs2881208	2:200137608	T/C	SATB2	intron	0.988	0.97521	0.0111	0.02309		7
rs34119395	2:200210419	A/G	SATB2	intron	0.958	0.97629	0.0130	0.06597		7
rs34314977	2:200184625	C/G	SATB2	intron	1.000	1.05717	0.0167	0.0008692		7
rs34377036	2:200198216	A/G	SATB2	intron	1.000	0.92524	0.0159	1.051E-6		7
rs34634963	2:200154552	T/C	SATB2	intron	0.973	0.93351	0.0201	0.0006234		5
rs35286168	2:200291337	A/G	SATB2	intron	0.977	1.07864	0.0159	2.042E-6		6
rs36011427	2:200153261	A/C	SATB2	intron	1.000	0.94819	0.0166	0.001335		5
rs3828186	2:200214273	T/C	SATB2	intron	0.998	1.07821	0.0174	0.00001523		5
rs4144841	2:200220540	T/C	SATB2	intron	1.000	1.08166	0.0159	8.229E-7		6
rs4673309	2:200147409	A/G	SATB2	intron	0.997	0.95657	0.0166	0.007591		7
rs4673313	2:200189323	T/C	SATB2	intron	1.000	1.08004	0.0158	1.169E-6		6
rs4673339	2:200273376	A/G	SATB2	intron	0.977	0.97200	0.0108	0.008706		6
rs4673346	2:200307980	A/C	SATB2	intron	0.973	1.02480	0.0117	0.03667		6
rs4675475	2:200176043	T/G	SATB2	intron	0.992	1.01837	0.0125	0.146		6
rs4675559	2:200271643	A/G	SATB2	intron	0.995	1.01593	0.0124	0.201		6
rs4675576	2:200279234	T/C	SATB2	intron	0.989	1.01521	0.0120	0.2107		5
rs4675601	2:200318538	T/G	SATB2	intron	0.937	1.07853	0.0174	0.00001451		7
rs62178567	2:200179501	A/C	SATB2	intron	0.924	0.99134	0.0206	0.6703		6
rs62178568	2:200187410	A/C	SATB2	intron	0.938	1.01319	0.0216	0.5459		7
rs62178572	2:200214569	C/G	SATB2	intron	0.920	1.01664	0.0216	0.444		6
rs62178602	2:200232604	A/G	SATB2	intron	0.917	0.99015	0.0186	0.5957		6
rs62178606	2:200259436	A/C	SATB2	intron	0.748	1.00753	0.0157	0.6319		6
rs62178608	2:200272264	T/C	SATB2	intron	0.796	1.00965	0.0518	0.8526		5
rs62178610	2:200292599	T/C	SATB2	intron	0.864	0.99104	0.0284	0.7509		7
rs6435016	2:200276011	T/C	SATB2	intron	0.994	0.95180	0.0162	0.002324		7
rs6435017	2:200291535	T/C	SATB2	intron	0.966	1.02860	0.0109	0.009676		6
rs6704641	2:200164252	A/G	SATB2	intron	0.992	1.07918	0.0138	3.397E-8		7
rs6705250	2:200307014	A/G	SATB2	intron	0.962	0.96262	0.0154	0.01328		7
rs67096136	2:200160217	A/G	SATB2	intron	0.927	0.97453	0.0203	0.2024		7
rs6716222	2:200226912	C/G	SATB2	intron	0.995	1.05633	0.0166	0.0009686		7
rs6726276	2:200296044	T/C	SATB2	intron	0.999	1.07681	0.0160	3.93E-6		6
rs67288417	2:200216449	C/G	SATB2	intron	1.000	0.92580	0.0159	1.235E-6		6
rs6730784	2:200276167	A/G	SATB2	intron	0.994	1.01562	0.0124	0.2126		7
rs6732702	2:200146653	A/G	SATB2	intron	0.977	0.95762	0.0165	0.00884		6
rs6735464	2:200146853	C/G	SATB2	intron	0.962	1.04645	0.0165	0.005917		7
rs6752494	2:200313323	T/C	SATB2	intron	0.975	1.07605	0.0155	2.315E-6		7
rs67531559	2:200287596	A/C	SATB2	intron	0.998	0.92709	0.0160	2.354E-6		7
rs71424226	2:200288689	A/C	SATB2	intron	0.999	0.92821	0.0160	3.447E-6		6
rs72929405	2:200139762	T/C	SATB2	intron	0.896	0.98629	0.0305	0.6519		7
rs72929459	2:200181613	T/C	SATB2	intron	0.883	0.97453	0.0507	0.6104		7
rs72929501	2:200230553	A/T	SATB2	intron	0.725	1.09297	0.0314	0.004574		7
rs72931305	2:200231621	A/G	SATB2	intron	0.993	0.92719	0.0175	0.00001572		5
rs72931316	2:200244917	A/G	SATB2	intron	0.688	0.92756	0.0299	0.01191		7
rs72931396	2:200301157	A/C	SATB2	intron	0.815	1.01471	0.0121	0.2285		5
rs72933407	2:200310250	C/G	SATB2	intron	0.881	0.95839	0.0456	0.351		5
rs74636531	2:200163404	A/T	SATB2	intron	0.950	0.95667	0.0285	0.1196		5
rs75482841	2:200186045	T/C	SATB2	intron	1.000	0.94601	0.0167	0.0008834		6
rs7557738	2:200219511	T/C	SATB2	intron	0.996	1.05643	0.0166	0.0009641		7
rs75589604	2:200150010	C/G	SATB2	intron	0.815	1.00090	0.0170	0.9575		7
rs7569519	2:200179822	A/C	SATB2	intron	0.996	0.98255	0.0125	0.16		7
rs75743445	2:200199752	A/C	SATB2	intron	0.770	1.13111	0.0376	0.00107		6
rs7577003	2:200275514	T/C	SATB2	intron	0.995	1.01593	0.0124	0.202		7
rs75793074	2:200224764	A/C	SATB2	intron	0.895	1.04519	0.0294	0.1322		5
rs7585392	2:200237383	T/C	SATB2	intron	0.994	1.05096	0.0163	0.002245		7
rs7595322	2:200215256	T/C	SATB2	intron	1.000	1.07950	0.0159	1.401E-6		6
rs7596078	2:200179843	T/C	SATB2	intron	0.996	1.01826	0.0125	0.1487		6
rs7597624	2:200211783	T/C	SATB2	intron	0.997	0.98255	0.0125	0.1592		7
rs7605111	2:200162727	T/C	SATB2	intron	0.990	1.07627	0.0136	7.017E-8		7
rs7607687	2:200263666	T/C	SATB2	intron	0.995	1.01806	0.0124	0.1484		7
rs76272181	2:200196478	T/C	SATB2	intron	0.614	0.92358	0.0634	0.2101		7
rs76527759	2:200140659	T/C	SATB2	intron	0.814	0.99900	0.0170	0.9528		6
rs76822045	2:200275145	T/C	SATB2	intron	0.860	0.97025	0.0242	0.2124		5
rs76950775	2:200223964	A/G	SATB2	intron	0.801	1.09988	0.0312	0.002254		6
rs77541570	2:200208890	T/C	SATB2	intron	0.774	0.98955	0.0359	0.7693		7
rs77798940	2:200146939	A/C	SATB2	intron	0.815	0.99900	0.0170	0.9549		7
rs78506129	2:200304810	T/C	SATB2	intron	0.957	1.04237	0.0155	0.007271		6
rs79070061	2:200235511	A/G	SATB2	intron	0.703	0.99581	0.0487	0.9314		7
rs79303419	2:200246743	T/C	SATB2	intron	0.772	1.01400	0.0270	0.6075		5
rs79665244	2:200218449	T/C	SATB2	intron	0.628	0.96764	0.0502	0.5131		6
rs79670270	2:200281091	A/G	SATB2	intron	0.859	1.03128	0.0242	0.204		6
rs80026169	2:200141100	T/G	SATB2	intron	0.750	0.98778	0.0413	0.7668		6
rs80158177	2:200312315	A/G	SATB2	intron	0.763	0.99720	0.0451	0.9513		6
rs895526	2:200162425	T/C	SATB2	intron	0.993	0.92923	0.0137	7.996E-8		7
rs895882	2:200303015	T/C	SATB2	intron	0.983	0.98275	0.0121	0.152		6
rs930615	2:200186088	A/G	SATB2	intron	0.661	1.08037	0.0599	0.1968		6
rs930616	2:200185915	T/C	SATB2	intron	0.995	1.01704	0.0125	0.1773		6
rs9646754	2:200300101	T/C	SATB2	intron	0.797	1.07433	0.0306	0.01922		6
rs971698	2:200178289	A/G	SATB2	intron	1.000	1.05538	0.0166	0.001141		5
rs991501	2:200308924	T/C	SATB2	intron	0.967	1.02532	0.0118	0.03384		7
rs994185	2:200142591	T/C	SATB2	intron	0.999	1.04707	0.0167	0.005865		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information