RLTPR

Basic Information

Gene Symbol	RLTPR
Entrez Id	146206
Position	chr16:67679030..67691472
Description	RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing
Gene type	protein coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs117444844	16:67691258	T/C	RLTPR	intron,near-gene-3	0.994	1.08578	0.0261	0.001595		5
rs117556162	16:67680806	A/G	RLTPR	ncRNA,missense	0.668	1.01725	0.0285	0.5468		5
rs117588403	16:67677877	T/C	RLTPR	near-gene-5	0.856	0.89030	0.0473	0.01409		5
rs118040419	16:67683449	A/G	RLTPR	ncRNA,missense	0.749	1.03386	0.0540	0.5374		5
rs139104491	16:67682497	A/G	RLTPR	intron	0.993	0.92182	0.0261	0.001829		-
rs141278110	16:67681548	A/C	RLTPR	intron	0.878	1.06322	0.0538	0.2546		-
rs147103712	16:67678157	T/C	RLTPR	near-gene-5	0.699	0.90747	0.0412	0.01842		-
rs151114296	16:67678162	A/G	RLTPR	near-gene-5	0.699	0.90747	0.0412	0.01842		-
rs189587636	16:67688103	A/G	RLTPR	ncRNA,missense	0.804	0.93763	0.0632	0.3084		-
rs59376497	16:67681170	T/C	RLTPR	intron	0.995	1.07702	0.0248	0.002791		5
rs60990105	16:67680956	A/T	RLTPR	intron	0.963	1.02860	0.0173	0.1045		5
rs62059341	16:67685730	A/T	RLTPR	ncRNA,missense	0.715	1.08166	0.0666	0.2388		5
rs7195415	16:67689057	A/G	RLTPR	intron	0.998	1.07552	0.0244	0.002854		5
rs73597575	16:67677001	T/C	RLTPR	near-gene-5	0.941	1.00592	0.0192	0.7573		7
rs73597578	16:67679348	T/C	RLTPR	intron	0.960	1.02994	0.0173	0.08791		2b
rs73597580	16:67679879	A/G	RLTPR	intron	0.962	1.02204	0.0179	0.2228		2b
rs73597581	16:67682234	A/G	RLTPR	intron	0.953	1.02235	0.0179	0.2168		5
rs73597582	16:67683626	A/G	RLTPR	intron	0.963	1.02122	0.0179	0.2395		5
rs74026418	16:67690633	A/C	RLTPR	intron,near-gene-3	0.963	1.07552	0.0266	0.006134		5
rs74026419	16:67690634	T/G	RLTPR	intron,near-gene-3	0.963	0.92979	0.0266	0.006143		5
rs76841123	16:67683564	C/G	RLTPR	intron	0.963	0.97932	0.0179	0.2414		5
rs78320020	16:67685900	T/C	RLTPR	ncRNA,missense	0.658	1.11260	0.0575	0.06349		5
rs9972635	16:67682580	T/C	RLTPR	intron	0.995	0.92441	0.0230	0.0006211		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information