RCN1

Basic Information

Gene Symbol	RCN1
Entrez Id	5954
Position	chr11:32112477..32127272
Description	reticulocalbin 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10742263	11:32067248	T/G	RCN1	intron	0.997	0.99134	0.0115	0.4476		5
rs10742264	11:32067311	T/C	RCN1	intron	0.995	0.99293	0.0115	0.5373		7
rs10767905	11:31872638	A/C	RCN1	intron	0.998	1.01319	0.0107	0.2199		7
rs10767914	11:32067547	T/C	RCN1	intron	0.997	0.99114	0.0115	0.4411		7
rs10835821	11:31870760	T/C	RCN1	intron	0.997	0.98787	0.0108	0.2582		7
rs10835824	11:31904417	T/C	RCN1	intron	0.998	1.02245	0.0142	0.1176		5
rs10835834	11:32076311	T/C	RCN1	near-gene-5	0.956	1.01694	0.0109	0.1251		6
rs11031484	11:31856654	T/C	RCN1	intron	0.955	1.00260	0.0140	0.8525		6
rs11031492	11:31884919	T/G	RCN1	intron	0.930	0.99641	0.0144	0.8039		7
rs11031497	11:31892255	A/G	RCN1	intron	0.984	0.98758	0.0108	0.2503		6
rs11031501	11:31897428	A/T	RCN1	intron	0.988	1.00160	0.0115	0.8901		5
rs11031504	11:31898304	A/G	RCN1	intron	0.989	1.00210	0.0115	0.8517		6
rs11031505	11:31898539	A/G	RCN1	intron	0.991	0.99720	0.0115	0.8096		7
rs11031506	11:31898885	T/C	RCN1	intron	0.991	0.99690	0.0115	0.7857		5
rs11031507	11:31899977	T/C	RCN1	intron	0.960	1.02798	0.0188	0.1416		7
rs11031509	11:31900314	A/G	RCN1	intron	0.990	1.00300	0.0115	0.7927		7
rs11031510	11:31900335	T/C	RCN1	intron	0.961	1.02768	0.0188	0.1467		6
rs11031515	11:31903811	T/C	RCN1	intron	0.674	1.02644	0.0419	0.5339		7
rs11031517	11:31906097	A/T	RCN1	intron	0.994	1.01969	0.0178	0.274		5
rs11031518	11:31906407	T/C	RCN1	intron	0.994	0.98079	0.0178	0.2761		7
rs11031520	11:31908725	T/G	RCN1	near-gene-3	0.998	1.02347	0.0142	0.102		4
rs11031584	11:32111895	T/C	RCN1	near-gene-5	0.969	1.01126	0.0151	0.4578		5
rs11031586	11:32114379	T/C	RCN1	intron	0.951	1.01735	0.0148	0.2454		2b
rs111890910	11:31896075	T/C	RCN1	intron	0.645	1.09308	0.0581	0.1258		7
rs11602684	11:32063393	T/C	RCN1	intron,near-gene-5	0.885	1.03386	0.0367	0.3637		5
rs117486167	11:32112307	A/G	RCN1	near-gene-5	0.792	0.99312	0.0330	0.8347		2b
rs117577003	11:32068945	A/T	RCN1	intron	0.757	1.01005	0.0494	0.8391		7
rs117738650	11:31877805	T/C	RCN1	intron	0.890	1.00371	0.0418	0.9295		6
rs117897576	11:31868719	T/C	RCN1	intron	0.771	1.04823	0.0481	0.328		7
rs118047494	11:31895326	A/C	RCN1	intron	0.768	1.02963	0.0410	0.4757		6
rs118169631	11:31886767	T/C	RCN1	intron	0.830	0.96117	0.0474	0.4035		7
rs11825821	11:31893669	T/G	RCN1	intron	0.940	0.98748	0.0114	0.2679		5
rs12146674	11:31886280	T/C	RCN1	intron	0.698	0.96938	0.0508	0.5405		7
rs12274470	11:32066768	T/C	RCN1	intron	0.968	1.02255	0.0121	0.06543		7
rs12286701	11:31863361	T/C	RCN1	intron	0.827	0.91714	0.0312	0.005503		6
rs12287436	11:32066465	A/C	RCN1	intron	0.828	0.98314	0.0211	0.4207		7
rs12360839	11:31876660	A/T	RCN1	intron	0.987	1.02265	0.0110	0.04171		6
rs12361704	11:31896228	T/C	RCN1	intron	0.911	1.01238	0.0216	0.5697		4
rs12362761	11:31881434	A/G	RCN1	intron	0.990	1.01288	0.0108	0.2357		7
rs12363397	11:31901009	T/C	RCN1	intron	0.978	1.00100	0.0114	0.9285		6
rs12363571	11:31883249	A/T	RCN1	intron	0.990	1.01298	0.0108	0.2348		5
rs12796967	11:31893146	T/C	RCN1	intron	0.983	0.98738	0.0108	0.2415		5
rs12801392	11:31902963	T/C	RCN1	intron	0.990	0.98108	0.0179	0.2865		7
rs12801438	11:31903038	T/C	RCN1	intron	0.990	0.98098	0.0179	0.2832		6
rs12804456	11:31908900	T/C	RCN1	near-gene-3	0.994	1.01319	0.0181	0.4696		4
rs138587007	11:31894211	T/C	RCN1	intron	0.656	0.93146	0.0509	0.1626		-
rs140876122	11:31893952	T/C	RCN1	intron	0.931	1.00934	0.0321	0.772		-
rs142186352	11:31904679	A/G	RCN1	intron	0.736	1.00260	0.0645	0.9678		-
rs143364597	11:31876600	A/C	RCN1	intron	0.701	1.02860	0.0506	0.5771		-
rs143438277	11:31895217	T/C	RCN1	intron	0.818	1.05117	0.0430	0.2451		-
rs143600096	11:31861496	T/G	RCN1	intron	0.826	0.98926	0.0555	0.8462		-
rs144290234	11:31869132	A/G	RCN1	intron	0.879	1.03272	0.0396	0.415		-
rs145960226	11:32063914	A/G	RCN1	intron,near-gene-5	0.889	1.02891	0.0376	0.4486		-
rs147081126	11:31880456	T/C	RCN1	intron	0.777	0.97083	0.0545	0.5874		-
rs147470123	11:31872347	A/G	RCN1	intron	0.801	1.02798	0.0327	0.3984		-
rs147981320	11:31905742	C/G	RCN1	intron	0.915	0.97531	0.0289	0.3874		-
rs149124870	11:31898148	C/G	RCN1	intron	0.880	1.02757	0.0579	0.6389		-
rs1524142	11:31873439	A/G	RCN1	intron	1.000	1.01217	0.0107	0.2597		7
rs1524143	11:31871538	A/G	RCN1	intron	1.000	0.98807	0.0107	0.265		5
rs16922535	11:31888130	T/G	RCN1	intron	0.984	0.98778	0.0108	0.2558		6
rs16922551	11:31906958	A/G	RCN1	intron	0.989	0.97599	0.0171	0.1554		5
rs170327	11:32111465	T/C	RCN1	near-gene-5	0.980	0.99233	0.0147	0.6009		6
rs17646359	11:31882393	A/G	RCN1	intron	0.920	0.94800	0.0243	0.02788		7
rs1805270	11:31845332	T/G	RCN1	intron	0.977	0.99611	0.0139	0.777		5
rs1806152	11:31851040	T/C	RCN1	intron	0.969	0.99571	0.0139	0.7593		4
rs1806154	11:31844104	T/C	RCN1	intron	0.979	1.00361	0.0139	0.7966		5
rs1806155	11:31841125	T/G	RCN1	intron,near-gene-5	0.979	0.99730	0.0138	0.8452		5
rs1806156	11:31840416	A/T	RCN1	intron,near-gene-5	0.989	1.00220	0.0139	0.8758		5
rs1806157	11:31840404	A/C	RCN1	intron,near-gene-5	0.986	0.99651	0.0138	0.8031		5
rs1806172	11:31845646	A/G	RCN1	intron	0.739	1.03283	0.0307	0.2931		2b
rs1806176	11:31842323	T/C	RCN1	intron	0.738	1.02398	0.0419	0.5715		4
rs1806179	11:31841860	T/C	RCN1	intron	0.982	1.00351	0.0138	0.8006		5
rs1806180	11:31840265	A/G	RCN1	intron,near-gene-5	0.986	0.99621	0.0138	0.7857		5
rs1806181	11:31839516	A/G	RCN1	intron,near-gene-5	0.970	1.01359	0.0315	0.6691		4
rs181762587	11:32115708	A/G	RCN1	intron	0.705	0.96715	0.0706	0.6362		-
rs182526308	11:32117102	T/C	RCN1	intron	0.923	1.04687	0.0473	0.3338		-
rs183155418	11:31858742	A/T	RCN1	intron	0.900	0.98177	0.0343	0.5907		-
rs2063016	11:32069871	A/G	RCN1	near-gene-5	0.980	0.98847	0.0110	0.2908		6
rs2064353	11:32069512	T/G	RCN1	near-gene-5	0.995	0.99402	0.0113	0.5926		7
rs2064354	11:32069287	A/T	RCN1	near-gene-5	0.980	1.01157	0.0110	0.2938		6
rs223042	11:32113944	C/G	RCN1	intron	0.965	0.98965	0.0152	0.4911		4
rs224611	11:32063076	T/C	RCN1	intron,near-gene-5	0.816	0.99134	0.0117	0.4552		6
rs224612	11:32063229	T/C	RCN1	intron,near-gene-5	0.902	0.99671	0.0126	0.7939		7
rs224613	11:32063566	T/C	RCN1	intron,near-gene-5	0.936	1.00572	0.0152	0.7093		7
rs224614	11:32063878	A/G	RCN1	intron,near-gene-5	0.943	1.00531	0.0151	0.7247		6
rs224615	11:32064120	A/G	RCN1	intron,near-gene-5	0.956	0.99571	0.0153	0.7804		7
rs224617	11:32064562	A/G	RCN1	intron,near-gene-5	0.977	1.00391	0.0152	0.7991		7
rs224618	11:32064649	T/G	RCN1	intron,near-gene-5	0.982	1.00743	0.0152	0.6238		6
rs224621	11:32065579	C/G	RCN1	intron	0.965	0.98600	0.0111	0.2018		5
rs224627	11:32066685	A/G	RCN1	intron	0.994	1.01025	0.0151	0.4981		6
rs224628	11:32066781	T/C	RCN1	intron	0.991	1.00331	0.0141	0.8129		7
rs2440238	11:31907986	T/G	RCN1	ncRNA	0.998	0.97941	0.0120	0.08243		5
rs2440249	11:31878966	A/G	RCN1	intron	0.970	1.00864	0.0132	0.5144		6
rs2440250	11:31879037	A/G	RCN1	intron	0.999	0.99015	0.0132	0.4535		7
rs2440251	11:31879380	A/G	RCN1	intron	0.993	1.00793	0.0132	0.5505		7
rs2473858	11:31887526	T/C	RCN1	intron	0.974	1.00451	0.0133	0.7332		5
rs2473859	11:31878670	T/C	RCN1	intron	1.000	0.98965	0.0132	0.4296		6
rs2473860	11:31878302	A/G	RCN1	intron	0.993	1.00541	0.0108	0.6214		7
rs2658577	11:32068176	A/G	RCN1	intron	0.998	0.98965	0.0151	0.4914		6
rs2745885	11:32070539	A/G	RCN1	near-gene-5	0.999	0.98995	0.0151	0.5037		7
rs2745886	11:32069802	T/G	RCN1	near-gene-5	0.998	0.98975	0.0151	0.497		6
rs2745888	11:32068350	A/T	RCN1	intron	1.000	0.99223	0.0115	0.5002		7
rs35230047	11:31873973	T/C	RCN1	intron	0.988	0.97775	0.0110	0.04115		7
rs35732969	11:31895908	A/G	RCN1	intron	0.983	1.00230	0.0115	0.8429		7
rs35762936	11:31896893	A/G	RCN1	intron	0.988	0.99740	0.0115	0.8218		6
rs3781857	11:32111389	T/G	RCN1	near-gene-5	0.955	0.99800	0.0170	0.9067		7
rs3781860	11:32111460	T/C	RCN1	near-gene-5	0.954	1.01025	0.0158	0.5195		6
rs4922880	11:31878967	C/G	RCN1	intron	0.967	0.98708	0.0110	0.2378		6
rs4922888	11:32070352	A/C	RCN1	near-gene-5	0.999	1.00652	0.0112	0.5638		7
rs58761315	11:32066491	A/G	RCN1	intron	0.990	0.99860	0.0143	0.9195		6
rs623312	11:31907464	A/G	RCN1	ncRNA	0.999	1.02081	0.0120	0.08565		6
rs624732	11:31869836	T/G	RCN1	intron	0.966	0.98946	0.0135	0.432		6
rs6484543	11:31885624	A/G	RCN1	intron	0.992	0.98748	0.0108	0.2437		7
rs652722	11:31905534	T/C	RCN1	intron	1.000	1.02460	0.0119	0.04147		6
rs662155	11:31892512	T/C	RCN1	intron	0.955	0.99312	0.0130	0.598		5
rs662606	11:31858991	A/G	RCN1	intron	0.820	0.99015	0.0129	0.442		7
rs663858	11:31898723	T/C	RCN1	intron	0.959	0.98354	0.0108	0.1237		5
rs664776	11:31898473	T/C	RCN1	intron	0.941	0.98285	0.0140	0.2146		7
rs66809859	11:31866586	A/T	RCN1	intron	0.833	1.00642	0.0132	0.6259		6
rs6711	11:32126938	T/C	RCN1	untranslated-3	0.991	1.00511	0.0114	0.6521		7
rs677874	11:31891303	T/G	RCN1	intron	0.978	0.99700	0.0132	0.8184		7
rs684478	11:31886101	T/C	RCN1	intron	0.982	1.00733	0.0111	0.5124		7
rs685428	11:31867699	A/G	RCN1	intron	0.970	0.98857	0.0135	0.3942		7
rs686699	11:31885579	A/G	RCN1	intron	0.987	0.99322	0.0111	0.5401		7
rs687947	11:31885356	A/G	RCN1	intron	0.988	1.01005	0.0133	0.4501		5
rs7106566	11:31902533	A/G	RCN1	intron	0.962	0.99561	0.0129	0.7335		6
rs7107972	11:31887129	A/G	RCN1	intron	0.985	1.01238	0.0108	0.2548		6
rs7112074	11:32069308	C/G	RCN1	near-gene-5	0.971	1.02092	0.0121	0.0869		6
rs71489821	11:31904941	T/G	RCN1	intron	0.993	1.01979	0.0179	0.2734		5
rs72883621	11:31853383	T/C	RCN1	intron	0.852	1.00461	0.0158	0.7695		7
rs72883623	11:31853968	A/C	RCN1	intron	0.852	1.00461	0.0158	0.7689		4
rs72892363	11:31881846	T/C	RCN1	intron	0.813	1.00844	0.0601	0.8885		7
rs72896305	11:31897846	A/G	RCN1	intron	0.924	1.00572	0.0150	0.7023		5
rs72896312	11:31902381	C/G	RCN1	intron	0.932	0.99312	0.0198	0.7291		7
rs72896313	11:31903191	T/G	RCN1	intron	0.989	0.98906	0.0157	0.4848		7
rs72896315	11:31905263	C/G	RCN1	intron	0.991	0.98847	0.0158	0.4606		7
rs72902239	11:32057280	A/G	RCN1	near-gene-3	0.811	1.07842	0.0506	0.1356		7
rs74483491	11:31905329	T/C	RCN1	intron	0.927	0.99263	0.0258	0.7744		7
rs75384900	11:32069766	A/C	RCN1	near-gene-5	0.723	1.02542	0.0329	0.4453		6
rs75587701	11:31901246	A/T	RCN1	intron	0.972	0.99840	0.0115	0.8883		6
rs75773356	11:31855821	A/G	RCN1	intron	0.814	1.06301	0.0262	0.01984		3a
rs76050990	11:31871889	T/G	RCN1	intron	0.877	0.99910	0.0639	0.9893		6
rs761453	11:31878000	T/C	RCN1	intron	1.000	1.01005	0.0132	0.4476		5
rs77175710	11:31902924	A/G	RCN1	intron	0.922	0.98472	0.0152	0.3115		7
rs77307251	11:31863453	C/G	RCN1	intron	0.844	1.08676	0.0315	0.008356		6
rs77318371	11:31886968	T/G	RCN1	intron	0.911	0.94990	0.0244	0.03478		7
rs77772412	11:31885980	T/C	RCN1	intron	0.718	0.99730	0.0440	0.9515		6
rs77841514	11:31872314	A/T	RCN1	intron	0.878	1.08101	0.0314	0.01303		5
rs77995304	11:31900271	T/C	RCN1	intron	0.851	1.01806	0.0346	0.6047		7
rs78114560	11:32057237	C/G	RCN1	near-gene-3	0.610	0.97775	0.0464	0.6287		7
rs78393232	11:31896113	T/C	RCN1	intron	0.727	1.00672	0.0339	0.8435		6
rs78800546	11:31879143	A/G	RCN1	intron	0.848	0.98936	0.0500	0.8302		7
rs7951747	11:32068681	C/G	RCN1	intron	0.999	0.99134	0.0115	0.4494		6
rs79781792	11:31899895	T/C	RCN1	intron	0.750	1.05411	0.0466	0.2583		6
rs85074	11:32076832	T/G	RCN1	near-gene-5	0.995	0.98255	0.0115	0.1246		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information