RAPGEF6

Basic Information

Gene Symbol	RAPGEF6
Entrez Id	51735
Position	chr5:130759614..130970929
Description	Rap guanine nucleotide exchange factor (GEF) 6
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs4996522	5:130761470	A/G	RAPGEF6	untranslated-3	0.990	1.02378	0.0127	0.06488		7
rs6878583	5:130761345	T/C	RAPGEF6	untranslated-3	0.993	0.99860	0.0284	0.9609		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18511947	GWAS	359 cases; 718 controls
21489405	GWAS	834 cases; 672 controls
Reference	Study type	Sample size

eQTL Information