PTP4A1

Basic Information

Gene Symbol	PTP4A1
Entrez Id	7803
Position	chr6:64281920..64293489
Description	protein tyrosine phosphatase type IVA, member 1
Gene type	protein-coding

SNP Information

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SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1062193	6:64292153	A/G	PTP4A1	untranslated-3	0.999	1.06035	0.0185	0.0015		5
rs10943869	6:64260279	A/C	PTP4A1	intron	0.982	1.02644	0.0114	0.02177		7
rs112609087	6:64261529	T/C	PTP4A1	intron	0.928	1.04456	0.0533	0.4138		7
rs113219475	6:64270108	T/G	PTP4A1	intron	0.999	1.06131	0.0186	0.001354		7
rs113718750	6:64266489	A/G	PTP4A1	intron	0.662	1.00552	0.0405	0.8921		5
rs113904667	6:64271650	T/G	PTP4A1	intron	0.973	0.94129	0.0554	0.2753		5
rs114380593	6:64292559	A/G	PTP4A1	untranslated-3	0.799	1.08687	0.0349	0.01692		4
rs114536102	6:64271301	A/G	PTP4A1	intron	0.735	1.04373	0.0408	0.2936		5
rs114576954	6:64266457	A/G	PTP4A1	intron	0.959	0.95380	0.0570	0.4068		5
rs115804903	6:64261453	A/T	PTP4A1	intron	0.694	0.98679	0.0394	0.7351		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Showing 1 to 10 of 74 entries

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Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information