PTN

Basic Information

Gene Symbol	PTN
Entrez Id	5764
Position	chr7:136912088..137028546
Description	pleiotrophin
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10215890	7:136956931	A/C	PTN	intron	0.941	1.02020	0.0151	0.187		6
rs10227966	7:137017100	T/C	PTN	intron	0.995	0.96416	0.0106	0.0005917		6
rs10231850	7:136963728	A/T	PTN	intron	0.746	1.03015	0.0432	0.492		6
rs10233933	7:137015603	A/T	PTN	intron	0.994	0.96397	0.0106	0.0005448		6
rs10241448	7:137016931	A/C	PTN	intron	0.995	0.96416	0.0106	0.0005843		6
rs10247519	7:136975874	T/G	PTN	intron	0.993	1.01187	0.0107	0.268		6
rs10248429	7:136976713	T/C	PTN	intron	0.923	1.03056	0.0413	0.4651		7
rs10250267	7:137011782	A/G	PTN	intron	0.987	1.03780	0.0107	0.0004915		7
rs10255150	7:137013466	A/G	PTN	intron	0.992	1.03707	0.0106	0.0006253		4
rs10256915	7:136913223	A/G	PTN	intron	0.998	1.00521	0.0110	0.634		7
rs10262764	7:136984795	A/G	PTN	intron	0.913	1.03697	0.0403	0.3677		6
rs10264510	7:136957727	A/G	PTN	intron	0.979	1.00310	0.0122	0.8012		7
rs10268741	7:136981223	A/G	PTN	intron	0.982	1.00592	0.0109	0.5901		7
rs10271620	7:137017202	A/G	PTN	intron	0.995	1.03717	0.0106	0.0005887		7
rs10282363	7:137015838	T/G	PTN	intron	0.994	0.96397	0.0106	0.0005503		6
rs10435425	7:136940800	T/C	PTN	intron	0.997	0.99561	0.0142	0.7542		6
rs10435428	7:136942867	C/G	PTN	intron	0.991	0.99432	0.0153	0.7075		6
rs10500126	7:136982746	A/G	PTN	intron	0.976	1.05982	0.0405	0.152		6
rs10954576	7:136913769	A/G	PTN	intron	1.000	0.99253	0.0152	0.6222		7
rs10954577	7:136914815	A/G	PTN	intron	0.999	1.00813	0.0136	0.5485		6
rs111342824	7:136929296	A/G	PTN	intron	0.979	0.95542	0.0278	0.1006		6
rs111353739	7:136927840	T/C	PTN	intron	0.845	1.07552	0.0398	0.06773		6
rs111355467	7:136965326	T/C	PTN	intron	0.978	1.04938	0.0257	0.06094		7
rs111553270	7:136959268	T/C	PTN	intron	0.951	1.07691	0.0357	0.03785		6
rs111593695	7:136970513	A/T	PTN	intron	0.980	0.94271	0.0405	0.1446		7
rs111963631	7:136932182	T/C	PTN	intron	0.825	1.00220	0.0294	0.9415		7
rs112322339	7:136943428	T/C	PTN	intron	0.934	0.93520	0.0428	0.1171		5
rs112699437	7:136988448	T/C	PTN	intron	0.944	0.94819	0.0410	0.1936		6
rs112786750	7:136952150	A/G	PTN	intron	0.870	0.99810	0.0184	0.916		5
rs113140832	7:136946781	T/G	PTN	intron	0.977	0.92543	0.0392	0.04793		6
rs115117047	7:136992947	T/C	PTN	intron	0.918	1.01694	0.0367	0.6477		6
rs116802903	7:136963738	A/C	PTN	intron	0.919	0.93165	0.0361	0.04994		6
rs116953599	7:136920870	T/G	PTN	intron	0.737	1.00975	0.0434	0.8229		7
rs117005738	7:136949967	T/C	PTN	intron	0.869	1.02819	0.0395	0.4813		7
rs117535511	7:136955496	C/G	PTN	intron	0.864	0.96725	0.0425	0.4335		7
rs117590518	7:136945151	A/C	PTN	intron	0.942	1.06684	0.0536	0.2276		7
rs117640371	7:136922629	C/G	PTN	intron	0.721	1.02747	0.0337	0.4224		6
rs11764598	7:136951940	T/C	PTN	intron	0.928	1.00944	0.0163	0.5627		7
rs11772240	7:136935298	C/G	PTN	intron	0.987	1.00541	0.0159	0.7315		5
rs117935486	7:136939027	A/G	PTN	intron	0.857	0.98817	0.0285	0.6751		5
rs118154907	7:136932621	T/C	PTN	intron	0.791	0.95868	0.0567	0.4572		6
rs12111796	7:136937966	C/G	PTN	intron	0.994	0.99730	0.0154	0.859		6
rs12112313	7:136968812	C/G	PTN	intron	0.905	1.01969	0.0345	0.571		6
rs12113527	7:136969109	A/G	PTN	intron	1.000	0.95437	0.0253	0.06486		6
rs12535403	7:136954555	T/C	PTN	intron,near-gene-5	0.962	1.08730	0.0388	0.03098		7
rs12535816	7:136937427	A/C	PTN	intron	0.986	0.92533	0.0388	0.04565		7
rs12536916	7:136972003	A/C	PTN	intron	1.000	0.95552	0.0253	0.07204		5
rs12666148	7:136990721	T/C	PTN	intron	0.931	1.01786	0.0137	0.1962		5
rs12671280	7:136979249	T/C	PTN	intron	0.982	1.01005	0.0126	0.4259		7
rs13224059	7:136933948	T/G	PTN	intron	0.991	1.00975	0.0163	0.5518		7
rs13228711	7:137018329	A/T	PTN	intron	0.979	1.00331	0.0150	0.8242		5
rs13229687	7:136932212	A/G	PTN	intron	0.992	0.99332	0.0152	0.6605		6
rs13229790	7:136932296	C/G	PTN	intron	0.990	0.99035	0.0163	0.5498		7
rs13230752	7:136980031	A/G	PTN	intron	0.947	0.99671	0.0150	0.8253		7
rs13240024	7:137021176	T/G	PTN	intron	0.982	0.99531	0.0149	0.754		7
rs13242861	7:136921761	T/C	PTN	intron	0.950	1.01268	0.0128	0.3223		7
rs13244002	7:136932281	T/C	PTN	intron	0.990	1.00985	0.0163	0.5492		7
rs13245564	7:136989304	A/G	PTN	intron	0.956	1.02173	0.0108	0.04707		6
rs13245911	7:136989606	A/G	PTN	intron	0.972	1.02603	0.0108	0.01701		3a
rs13246065	7:136961439	T/C	PTN	intron	0.938	0.98580	0.0180	0.4269		6
rs1367590	7:136979849	T/C	PTN	intron	0.988	1.01898	0.0112	0.09325		5
rs1367596	7:136934388	T/C	PTN	intron	0.990	1.00070	0.0119	0.9505		6
rs138392184	7:136965366	T/C	PTN	intron	0.818	1.00833	0.0260	0.7505		-
rs139319643	7:136949576	T/C	PTN	intron	0.952	0.99601	0.0345	0.9072		-
rs139830974	7:137016788	A/G	PTN	intron	0.761	1.01400	0.0503	0.7817		-
rs140385314	7:136964715	A/C	PTN	intron	0.697	0.89700	0.0629	0.08414		-
rs140888890	7:137024728	A/G	PTN	intron	0.915	0.97736	0.0564	0.685		-
rs141567772	7:136933401	T/C	PTN	intron	0.714	0.93941	0.0408	0.1253		-
rs141685801	7:136998782	T/C	PTN	intron	0.909	0.86979	0.0596	0.0192		-
rs141856512	7:137001565	A/G	PTN	intron	0.761	0.91934	0.0530	0.1124		-
rs142529569	7:136989571	A/C	PTN	intron	0.682	1.03717	0.0655	0.5776		-
rs143505956	7:136927747	A/G	PTN	intron	0.966	1.00361	0.0336	0.9142		-
rs144047971	7:136944878	T/C	PTN	intron	0.826	0.98896	0.0482	0.8169		-
rs144487135	7:136924226	T/C	PTN	intron	0.942	1.02798	0.0397	0.4875		-
rs144652687	7:137012994	A/G	PTN	intron	0.873	1.03593	0.0537	0.5108		-
rs144933186	7:136952115	C/G	PTN	intron	0.856	0.92700	0.0585	0.1955		-
rs145484105	7:136951005	A/G	PTN	intron	0.878	1.02634	0.0493	0.5983		-
rs145996762	7:137027513	T/C	PTN	intron	0.814	1.03272	0.0641	0.615		-
rs146381753	7:136973761	C/G	PTN	intron	0.781	1.02398	0.0580	0.6827		-
rs146547955	7:136963711	A/G	PTN	intron	0.850	1.01867	0.0196	0.3453		-
rs147767078	7:136999926	A/G	PTN	intron	0.782	0.91530	0.0564	0.1166		-
rs148228114	7:136971763	A/T	PTN	intron	0.783	1.02143	0.0586	0.7179		-
rs149372631	7:136991199	C/G	PTN	intron	0.685	0.96512	0.0656	0.5879		-
rs149585287	7:136948556	T/C	PTN	intron	0.933	1.07735	0.0540	0.1677		-
rs150207576	7:136953186	T/C	PTN	intron,untranslated-5	0.735	1.02081	0.0540	0.7024		-
rs167718	7:136947407	T/C	PTN	intron	0.983	1.00100	0.0107	0.9272		7
rs16874924	7:136945024	C/G	PTN	intron	0.982	1.00733	0.0139	0.5978		7
rs16874934	7:136984564	C/G	PTN	intron	0.999	1.00391	0.0139	0.7765		7
rs16874937	7:136984716	T/C	PTN	intron	0.994	1.00451	0.0132	0.7303		6
rs17133397	7:136934529	A/G	PTN	intron	0.995	1.00652	0.0152	0.6671		7
rs17168990	7:136915059	T/G	PTN	intron	1.000	1.00140	0.0143	0.9223		7
rs17168991	7:136916392	T/C	PTN	intron	0.982	0.96474	0.0226	0.1124		7
rs17168993	7:136916751	C/G	PTN	intron	0.992	0.99144	0.0136	0.5264		6
rs17168999	7:136920041	T/C	PTN	intron	0.976	0.96802	0.0227	0.1509		6
rs17169007	7:136940418	C/G	PTN	intron	0.910	0.96464	0.0437	0.4098		6
rs17169015	7:136944232	T/C	PTN	intron	0.982	1.03035	0.0396	0.4504		6
rs17169016	7:136944321	T/C	PTN	intron	0.988	0.99471	0.0153	0.7285		6
rs17169018	7:136953783	T/C	PTN	intron,near-gene-5	0.848	0.99621	0.0436	0.9298		6
rs17169022	7:136960590	C/G	PTN	intron	0.974	0.99442	0.0162	0.7308		7
rs17169033	7:136968621	T/C	PTN	intron	0.973	0.98985	0.0125	0.4184		7
rs17169038	7:136971039	C/G	PTN	intron	0.917	1.02644	0.0412	0.526		7
rs17169047	7:136974025	T/C	PTN	intron	0.999	0.99651	0.0139	0.8039		7
rs17169050	7:136975678	A/G	PTN	intron	0.722	0.97443	0.0325	0.4257		7
rs17169051	7:136976382	T/G	PTN	intron	0.978	1.07939	0.0350	0.02887		7
rs17169053	7:136978885	A/T	PTN	intron	0.981	1.08112	0.0349	0.0256		7
rs17169059	7:136984520	A/G	PTN	intron	0.977	1.08037	0.0350	0.02707		7
rs17169061	7:136984846	A/G	PTN	intron	0.974	1.07799	0.0351	0.03255		7
rs17169062	7:136984858	C/G	PTN	intron	0.999	0.99273	0.0138	0.5978		7
rs17169064	7:136988804	T/G	PTN	intron	0.942	1.01045	0.0138	0.4527		7
rs1731954	7:136990665	A/G	PTN	intron	0.986	1.03458	0.0108	0.001649		6
rs17510996	7:136913148	A/G	PTN	intron	0.839	1.01613	0.0230	0.4868		7
rs17603449	7:136965293	A/G	PTN	intron	0.962	1.05201	0.0406	0.2111		6
rs17603498	7:136965735	T/C	PTN	intron	0.972	0.95056	0.0403	0.2087		7
rs17661392	7:136972378	A/G	PTN	intron	0.978	1.05106	0.0401	0.2143		7
rs181076697	7:136960397	A/T	PTN	intron	0.943	0.99601	0.0165	0.8064		-
rs182519554	7:136916460	T/C	PTN	intron	0.809	1.07530	0.0601	0.2273		-
rs184504803	7:136924174	A/T	PTN	intron	0.797	0.95858	0.0565	0.4534		-
rs190424360	7:136986671	A/G	PTN	intron	0.826	1.08904	0.0619	0.168		-
rs225137	7:136946906	A/G	PTN	intron	0.991	1.00491	0.0108	0.6518		6
rs28489068	7:136919923	A/G	PTN	intron	0.980	0.98876	0.0127	0.375		7
rs2882589	7:136994998	A/G	PTN	intron	0.978	1.03107	0.0107	0.004243		6
rs34744645	7:136933524	A/T	PTN	intron	0.993	1.00662	0.0152	0.6647		6
rs35298418	7:136948786	T/C	PTN	intron	0.969	1.00541	0.0154	0.7258		6
rs3959914	7:136971101	T/C	PTN	intron	0.990	1.01877	0.0112	0.09573		7
rs3959915	7:136971270	T/C	PTN	intron	0.985	1.02183	0.0114	0.05744		5
rs4142090	7:136925134	C/G	PTN	intron	0.998	0.99362	0.0158	0.6867		7
rs4732250	7:136928381	A/T	PTN	intron	0.701	1.02010	0.0205	0.3317		6
rs4732251	7:136940099	T/C	PTN	intron	0.609	1.00531	0.0445	0.9053		7
rs58439678	7:136988541	A/G	PTN	intron	0.958	0.99790	0.0142	0.8836		7
rs60901799	7:136981073	T/C	PTN	intron	0.922	1.02912	0.0414	0.4875		7
rs61525640	7:136963233	T/C	PTN	intron	0.899	0.98946	0.0168	0.5304		7
rs62487101	7:136913001	T/C	PTN	intron	0.687	0.95925	0.0236	0.07724		7
rs62487104	7:136926257	T/C	PTN	intron	0.940	1.00844	0.0161	0.604		6
rs62487105	7:136930539	C/G	PTN	intron	0.991	1.00753	0.0152	0.6237		7
rs62487108	7:136963344	A/C	PTN	intron	0.889	1.01390	0.0182	0.448		6
rs62487109	7:136972986	A/G	PTN	intron	0.932	1.00080	0.0231	0.9727		6
rs6467703	7:136971908	T/C	PTN	intron	0.887	1.06684	0.0351	0.06546		5
rs67907798	7:137020726	T/C	PTN	intron	0.959	1.05243	0.0163	0.001785		5
rs6943993	7:136985916	A/G	PTN	intron	0.978	0.97863	0.0114	0.05751		7
rs6946427	7:136928616	C/G	PTN	intron	0.778	1.05390	0.0441	0.2339		3a
rs6950835	7:136978529	T/C	PTN	intron	0.980	0.97726	0.0114	0.04422		6
rs6956523	7:136913885	A/T	PTN	intron	1.000	1.00060	0.0140	0.9668		6
rs6961235	7:136973027	T/C	PTN	intron	0.976	0.92951	0.0348	0.03574		6
rs6961948	7:136982500	T/G	PTN	intron	0.925	1.03376	0.0410	0.4178		5
rs6964002	7:136919478	A/T	PTN	intron	0.911	1.01898	0.0622	0.7628		5
rs6970530	7:136966331	A/G	PTN	intron	1.000	1.05169	0.0252	0.04592		7
rs6970674	7:136966439	T/G	PTN	intron	0.977	1.02255	0.0114	0.05139		6
rs6972523	7:136984631	T/C	PTN	intron	0.988	1.00702	0.0109	0.5192		7
rs6977749	7:136985504	T/C	PTN	intron	0.995	1.00995	0.0106	0.3502		7
rs6977819	7:136985342	A/G	PTN	intron	0.995	1.01187	0.0106	0.2657		7
rs6979228	7:136972966	T/G	PTN	intron	0.999	1.04697	0.0253	0.06919		7
rs706557	7:136926814	T/C	PTN	intron	0.980	1.00361	0.0180	0.8428		5
rs71541344	7:136930571	A/T	PTN	intron	0.987	1.01005	0.0166	0.5454		6
rs72611535	7:136921667	C/G	PTN	intron	0.958	1.00692	0.0155	0.6549		6
rs72611536	7:136927464	C/G	PTN	intron	0.993	0.99302	0.0158	0.6601		7
rs72611537	7:136948782	A/G	PTN	intron	0.968	0.99491	0.0155	0.7421		7
rs72611538	7:136950272	T/C	PTN	intron	0.960	1.00411	0.0156	0.7922		7
rs72611539	7:136959120	A/T	PTN	intron	0.967	1.00531	0.0162	0.7428		6
rs72611540	7:136960380	T/G	PTN	intron	0.974	1.00602	0.0162	0.7099		6
rs72611541	7:136960430	A/G	PTN	intron	0.974	1.00602	0.0162	0.7115		7
rs72611542	7:136961189	T/G	PTN	intron	0.954	0.99511	0.0161	0.7605		7
rs73162494	7:136931076	T/C	PTN	intron	0.789	1.03407	0.0416	0.4208		5
rs73163700	7:136993664	T/C	PTN	intron	0.771	1.17152	0.0637	0.01305		7
rs73165715	7:137017209	T/C	PTN	intron	0.941	0.95304	0.0172	0.005339		6
rs73728260	7:136978198	A/T	PTN	intron	0.920	1.03076	0.0412	0.4629		7
rs74465323	7:136975595	A/T	PTN	intron	0.979	0.99064	0.0126	0.4572		6
rs74575637	7:136944462	T/C	PTN	intron	0.969	0.92404	0.0387	0.04114		7
rs74586609	7:136964503	A/G	PTN	intron	0.835	0.94724	0.0265	0.04121		6
rs75073876	7:136971241	T/G	PTN	intron	0.866	1.14729	0.0565	0.015		5
rs75193610	7:136996938	A/T	PTN	intron	0.873	1.07541	0.0272	0.007444		7
rs75332769	7:136961437	T/C	PTN	intron	0.947	0.99491	0.0163	0.755		6
rs75507813	7:136928501	A/C	PTN	intron	0.904	1.02521	0.0533	0.6407		5
rs75611580	7:136918167	T/C	PTN	intron	0.936	1.01745	0.0531	0.7451		7
rs75613360	7:136981593	A/C	PTN	intron	0.744	1.01704	0.0301	0.5733		5
rs75827317	7:136932390	T/C	PTN	intron	0.977	1.02327	0.0398	0.5625		6
rs76526947	7:137023278	T/C	PTN	intron	0.876	1.02747	0.0432	0.5297		5
rs76629505	7:136984385	T/C	PTN	intron	0.931	0.97511	0.0446	0.5719		6
rs76745761	7:137012561	A/G	PTN	intron	0.867	0.90638	0.0393	0.01235		7
rs76825787	7:137026836	T/C	PTN	intron	0.955	0.95180	0.0169	0.003484		5
rs76944235	7:136921784	A/G	PTN	intron	0.915	1.13542	0.0613	0.03817		7
rs76960820	7:136958119	A/G	PTN	intron	0.985	0.97511	0.0166	0.1273		7
rs77063876	7:136924846	T/C	PTN	intron	0.984	1.08437	0.0389	0.03768		7
rs77201625	7:136952328	A/G	PTN	intron	0.921	1.01319	0.0165	0.4257		7
rs77898822	7:136961438	A/G	PTN	intron	0.945	1.00331	0.0163	0.8393		6
rs77912591	7:136928959	A/G	PTN	intron	0.987	1.08145	0.0388	0.04377		6
rs77925462	7:136985921	A/G	PTN	intron	0.992	1.00823	0.0137	0.5485		7
rs77997292	7:136926447	T/C	PTN	intron	0.967	0.99601	0.0336	0.9046		7
rs78038519	7:136999883	A/G	PTN	intron	0.975	1.01238	0.0180	0.4937		6
rs7807025	7:137017876	T/C	PTN	intron	0.990	0.96483	0.0106	0.0007589		5
rs78086971	7:136952882	C/G	PTN	intron	0.898	1.01187	0.0156	0.4488		7
rs78428127	7:136973189	T/C	PTN	intron	0.916	0.97132	0.0422	0.4913		6
rs78466173	7:136996431	T/G	PTN	intron	0.681	1.24433	0.0716	0.002282		6
rs78469211	7:137020408	C/G	PTN	intron	0.916	1.02245	0.0564	0.6942		7
rs78535983	7:136942070	A/G	PTN	intron	0.971	1.08264	0.0388	0.04064		7
rs78696049	7:136990648	T/C	PTN	intron	0.647	1.10971	0.0485	0.03177		7
rs78734830	7:136913061	A/G	PTN	intron	0.976	1.02932	0.0224	0.1968		7
rs78813592	7:137001889	A/T	PTN	intron	0.979	1.01056	0.0181	0.561		5
rs78913041	7:136946347	A/G	PTN	intron	0.685	0.96773	0.0451	0.4674		6
rs79918986	7:136933927	T/C	PTN	intron	0.978	1.02255	0.0397	0.5742		6
rs80078783	7:136930605	A/G	PTN	intron	0.987	0.92515	0.0388	0.04496		6
rs80256570	7:136930512	C/G	PTN	intron	0.770	1.02798	0.0454	0.544		5
rs833388	7:136952669	T/C	PTN	intron	0.917	0.98590	0.0112	0.202		5
rs844287	7:136928699	C/G	PTN	intron	0.980	0.98955	0.0166	0.5277		4
rs864428	7:136925471	T/C	PTN	intron	0.988	1.00401	0.0107	0.7121		7
rs891586	7:136923730	T/C	PTN	intron	0.997	0.99501	0.0158	0.7517		6
rs891587	7:136923508	T/C	PTN	intron	0.995	0.99442	0.0158	0.7244		7
rs919581	7:136980174	A/G	PTN	intron	1.000	1.00371	0.0139	0.7914		7
rs9969157	7:136966986	A/G	PTN	intron	0.980	1.00823	0.0109	0.4505		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information