PSMA4

Basic Information

Gene Symbol	PSMA4
Entrez Id	5685
Position	chr15:78832747..78841562
Description	proteasome (prosome, macropain) subunit, alpha type, 4
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1052035	15:78841353	T/C	PSMA4	untranslated-3	0.761	0.94242	0.0271	0.02862		7
rs111972507	15:78836917	A/C	PSMA4	intron	0.891	1.01654	0.0400	0.6818		6
rs113352275	15:78840567	T/C	PSMA4	intron	0.955	0.92450	0.0133	3.559E-9		6
rs117422252	15:78837381	T/G	PSMA4	intron	0.671	1.05876	0.0460	0.2152		6
rs11858230	15:78835552	A/G	PSMA4	intron	0.997	1.01461	0.0108	0.1795		7
rs12901682	15:78833223	A/C	PSMA4	intron	0.949	0.96657	0.0437	0.4362		4
rs12915366	15:78831753	A/G	PSMA4	near-gene-5	0.997	1.01725	0.0108	0.1138		7
rs12915652	15:78831928	A/G	PSMA4	near-gene-5	0.998	1.01390	0.0108	0.2008		7
rs12916483	15:78832397	A/G	PSMA4	near-gene-5	0.998	1.01390	0.0108	0.2017		4
rs141147481	15:78835239	C/G	PSMA4	intron	0.812	1.10672	0.0407	0.01287		-
rs141607049	15:78833581	A/C	PSMA4	intron	0.741	0.90747	0.0494	0.04948		-
rs148676889	15:78840152	T/G	PSMA4	intron	0.953	0.97045	0.0533	0.5732		-
rs181182671	15:78839414	T/C	PSMA4	intron	0.695	0.91274	0.0599	0.1272		-
rs191730608	15:78836751	A/G	PSMA4	intron	0.954	0.97171	0.0553	0.6033		-
rs2292117	15:78834689	A/G	PSMA4	intron	0.997	1.01420	0.0108	0.1919		6
rs28392948	15:78836866	T/C	PSMA4	intron	0.997	1.01471	0.0108	0.1774		6
rs28438420	15:78836288	A/T	PSMA4	intron	0.991	1.00682	0.0106	0.5234		7
rs28498264	15:78837673	T/C	PSMA4	intron	0.979	0.92617	0.0127	1.673E-9		6
rs34138960	15:78831668	A/G	PSMA4	near-gene-5	0.996	1.07713	0.0126	3.248E-9		7
rs34664138	15:78831624	T/G	PSMA4	near-gene-5	0.996	1.07713	0.0126	3.246E-9		7
rs35212593	15:78831826	A/G	PSMA4	near-gene-5	0.996	0.92849	0.0126	3.429E-9		7
rs3813570	15:78832832	T/C	PSMA4	intron,untranslated-5	0.994	1.07853	0.0126	1.864E-9		4
rs3813571	15:78832792	T/G	PSMA4	untranslated-5	0.998	1.01400	0.0108	0.197		1f
rs3813572	15:78832588	T/C	PSMA4	near-gene-5	0.998	0.98610	0.0108	0.1956		2b
rs41280046	15:78834476	A/G	PSMA4	intron	0.795	0.99054	0.0260	0.714		7
rs41280048	15:78841591	A/G	PSMA4	near-gene-3	0.695	0.97171	0.0639	0.6537		7
rs4243083	15:78833830	C/G	PSMA4	intron	0.997	1.01440	0.0108	0.1866		4
rs4886571	15:78833758	A/G	PSMA4	intron	0.997	0.98610	0.0108	0.1954		4
rs4886572	15:78837452	A/G	PSMA4	intron	0.996	1.01481	0.0108	0.1743		7
rs4887062	15:78837801	A/G	PSMA4	intron	0.990	0.98482	0.0108	0.1582		7
rs4887063	15:78839715	T/C	PSMA4	intron	0.994	0.98541	0.0108	0.1752		7
rs59133824	15:78833450	A/C	PSMA4	intron	0.991	0.92626	0.0126	1.138E-9		4
rs59683676	15:78833453	T/C	PSMA4	intron	0.992	1.07961	0.0126	1.154E-9		4
rs75754317	15:78836721	C/G	PSMA4	intron	0.918	0.98089	0.0111	0.08339		6
rs76189127	15:78838837	A/C	PSMA4	intron	0.805	1.01359	0.0193	0.4824		6
rs76712448	15:78836719	A/G	PSMA4	intron	0.927	1.01939	0.0111	0.08266		6
rs77424455	15:78833362	A/G	PSMA4	intron	0.947	1.03842	0.0436	0.3869		2b
rs77434238	15:78836726	T/C	PSMA4	intron	0.920	1.01979	0.0111	0.07802		6
rs78262427	15:78835678	A/G	PSMA4	intron	0.939	1.06237	0.0371	0.1029		7
rs78406067	15:78836723	T/C	PSMA4	intron	0.918	1.01949	0.0111	0.08339		7
rs8053	15:78841220	T/C	PSMA4	coding-synon	0.994	1.01572	0.0108	0.1507		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information