PLA2G6

Basic Information

Gene Symbol	PLA2G6
Entrez Id	8398
Position	chr22:38507502..38577836
Description	phospholipase A2, group VI (cytosolic, calcium-independent)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11089863	22:38512402	A/G	PLA2G6	intron	0.987	0.97873	0.0112	0.054		4
rs11089864	22:38518360	C/G	PLA2G6	intron	0.773	0.99144	0.0318	0.7881		5
rs112035659	22:38561853	T/C	PLA2G6	intron	0.927	0.96262	0.0277	0.169		6
rs113238120	22:38589364	A/G	PLA2G6	near-gene-5	0.972	1.01501	0.0284	0.6		5
rs11570750	22:38513138	A/G	PLA2G6	intron	0.983	0.97853	0.0112	0.05216		5
rs117694614	22:38587223	A/G	PLA2G6	intron	0.668	0.99521	0.0539	0.9293		7
rs117847163	22:38558743	T/C	PLA2G6	intron	0.875	0.98551	0.0283	0.605		4
rs118124774	22:38553109	T/G	PLA2G6	intron	0.681	1.01562	0.0291	0.595		6
rs11912271	22:38587762	A/G	PLA2G6	intron	0.996	1.01552	0.0273	0.5733		7
rs11912280	22:38587833	A/G	PLA2G6	intron	0.996	1.01572	0.0272	0.5654		5
rs11912714	22:38588102	A/G	PLA2G6	near-gene-5	0.996	0.98876	0.0273	0.6808		4
rs11912750	22:38588030	C/G	PLA2G6	intron	0.996	1.01542	0.0273	0.5756		5
rs12167576	22:38512562	A/G	PLA2G6	intron	0.987	0.97883	0.0112	0.05499		4
rs12169611	22:38513735	T/C	PLA2G6	intron	0.987	1.02194	0.0112	0.05227		5
rs12485185	22:38560836	T/C	PLA2G6	intron	0.624	0.97356	0.0322	0.4058		5
rs13056506	22:38580917	T/G	PLA2G6	intron	0.994	1.01066	0.0108	0.3241		5
rs132950	22:38548972	A/G	PLA2G6	intron	0.955	0.99770	0.0142	0.8711		6
rs132951	22:38548973	C/G	PLA2G6	intron	0.973	1.00230	0.0191	0.9023		6
rs132955	22:38549969	T/C	PLA2G6	intron	0.967	0.99810	0.0140	0.894		4
rs132957	22:38551166	A/G	PLA2G6	intron	0.970	1.01908	0.0107	0.07647		6
rs132965	22:38561523	T/C	PLA2G6	intron	0.999	1.00300	0.0179	0.8669		5
rs132970	22:38561835	T/C	PLA2G6	intron	0.992	1.01552	0.0106	0.1475		7
rs132979	22:38562924	T/C	PLA2G6	intron	0.986	1.00120	0.0179	0.9473		5
rs132987	22:38563572	A/G	PLA2G6	intron	0.999	1.00290	0.0179	0.8715		5
rs132991	22:38566331	T/C	PLA2G6	intron	0.999	1.00190	0.0180	0.9143		7
rs132995	22:38567040	A/G	PLA2G6	intron	0.980	1.00100	0.0178	0.9557		7
rs133000	22:38567671	T/C	PLA2G6	intron	0.998	0.99740	0.0180	0.8857		6
rs133012	22:38570721	A/G	PLA2G6	intron	0.999	0.98108	0.0106	0.07059		5
rs133013	22:38570912	T/C	PLA2G6	intron	0.999	0.98108	0.0106	0.07042		7
rs133014	22:38571087	T/G	PLA2G6	intron	0.998	1.02020	0.0106	0.05812		7
rs133015	22:38572526	C/G	PLA2G6	intron	0.997	1.02276	0.0107	0.03507		4
rs133016	22:38572582	T/C	PLA2G6	intron	0.993	0.97961	0.0106	0.05203		4
rs133021	22:38573338	T/C	PLA2G6	intron	0.999	1.01979	0.0105	0.06324		5
rs133022	22:38573589	T/C	PLA2G6	intron	0.976	1.01949	0.0107	0.0713		7
rs133023	22:38573629	T/C	PLA2G6	intron	0.966	1.01806	0.0108	0.09645		7
rs133029	22:38576315	T/C	PLA2G6	intron	0.993	0.97638	0.0179	0.1828		4
rs138595918	22:38573705	T/C	PLA2G6	intron	0.982	1.02102	0.0278	0.4554		-
rs138683183	22:38508249	A/G	PLA2G6	coding-synon,near-gene-5	0.880	1.03334	0.0680	0.6291		-
rs138834877	22:38577986	C/G	PLA2G6	intron,near-gene-5	0.751	1.04404	0.0509	0.3978		-
rs138957902	22:38580643	A/G	PLA2G6	intron	0.861	0.98157	0.0707	0.7925		-
rs139447537	22:38552724	T/C	PLA2G6	intron	0.886	1.01979	0.0693	0.7772		-
rs140348680	22:38579534	A/G	PLA2G6	intron,near-gene-5	0.861	1.01877	0.0707	0.7919		-
rs140643811	22:38567121	C/G	PLA2G6	intron	0.871	1.01572	0.0284	0.5836		-
rs142249565	22:38573639	T/G	PLA2G6	intron	0.950	0.97365	0.0293	0.3624		-
rs143579727	22:38568815	A/C	PLA2G6	intron	0.763	0.96348	0.0611	0.5427		-
rs146091262	22:38573659	T/C	PLA2G6	intron	0.966	1.02881	0.0286	0.3215		-
rs146575809	22:38580496	A/G	PLA2G6	intron	0.955	0.90701	0.0461	0.03425		-
rs147367926	22:38548461	A/G	PLA2G6	intron	0.770	1.04321	0.0608	0.4864		-
rs148373536	22:38578481	A/G	PLA2G6	intron,near-gene-5	0.692	1.01959	0.0491	0.6919		-
rs16998801	22:38572484	T/G	PLA2G6	intron	0.982	0.98187	0.0280	0.5133		4
rs186669991	22:38548405	T/G	PLA2G6	intron	0.999	0.93379	0.0414	0.09766		-
rs2072867	22:38519335	A/G	PLA2G6	intron	0.964	1.00270	0.0182	0.8821		5
rs2076114	22:38509439	T/C	PLA2G6	intron,near-gene-3	0.968	0.99920	0.0193	0.966		5
rs2076115	22:38517202	T/C	PLA2G6	intron	0.989	1.01939	0.0107	0.07247		7
rs2076116	22:38517405	T/C	PLA2G6	intron	0.988	1.01826	0.0107	0.09028		7
rs2076117	22:38519513	T/C	PLA2G6	intron	0.988	0.99810	0.0182	0.9155		5
rs2092180	22:38571563	A/G	PLA2G6	intron	0.999	1.01928	0.0106	0.07037		4
rs2235344	22:38518083	A/G	PLA2G6	intron	0.989	0.98452	0.0107	0.1463		5
rs2235345	22:38518177	T/C	PLA2G6	intron	1.000	0.98383	0.0113	0.1468		5
rs2235346	22:38518229	T/G	PLA2G6	intron	0.990	0.98629	0.0106	0.1921		5
rs2235347	22:38522887	A/G	PLA2G6	intron,near-gene-3	0.957	1.01430	0.0110	0.1963		5
rs2267367	22:38564854	C/G	PLA2G6	intron	0.940	0.99770	0.0193	0.9067		5
rs2267368	22:38565209	A/G	PLA2G6	intron	0.988	1.01562	0.0359	0.6653		7
rs2267369	22:38565347	T/C	PLA2G6	coding-synon,ncRNA	0.987	1.01177	0.0360	0.7452		7
rs2267370	22:38576826	A/G	PLA2G6	intron	0.999	0.98442	0.0112	0.1615		2b
rs2267371	22:38577119	T/G	PLA2G6	intron	0.999	1.01532	0.0112	0.1746		4
rs2277844	22:38577515	A/G	PLA2G6	intron	0.998	1.02265	0.0107	0.03588		4
rs2284059	22:38513427	A/C	PLA2G6	intron	0.967	0.99870	0.0193	0.9462		6
rs2284064	22:38547395	A/C	PLA2G6	intron	1.000	1.02000	0.0109	0.07042		7
rs2284065	22:38547538	A/G	PLA2G6	intron	0.975	1.01867	0.0358	0.6051		7
rs2284066	22:38559409	A/G	PLA2G6	intron	0.985	1.01664	0.0359	0.6464		5
rs2284067	22:38563511	T/C	PLA2G6	intron	0.987	1.01157	0.0359	0.7484		5
rs2413503	22:38568944	A/T	PLA2G6	intron	0.998	1.01928	0.0106	0.06963		4
rs28428653	22:38569557	A/G	PLA2G6	intron	0.986	1.00160	0.0178	0.9298		3a
rs28565947	22:38570775	C/G	PLA2G6	intron	0.997	1.02368	0.0111	0.03545		5
rs28653361	22:38570700	A/C	PLA2G6	intron	0.997	0.97677	0.0111	0.03525		7
rs28718653	22:38570698	A/C	PLA2G6	intron	0.997	0.97677	0.0111	0.03516		7
rs34771206	22:38585354	A/T	PLA2G6	intron	0.995	0.98689	0.0154	0.3896		7
rs35337783	22:38512765	A/G	PLA2G6	intron	0.986	1.02153	0.0112	0.05625		7
rs35526737	22:38567392	A/T	PLA2G6	intron	0.758	1.01035	0.0155	0.5077		7
rs3788532	22:38523211	A/G	PLA2G6	intron,near-gene-3	0.965	0.98955	0.0110	0.3426		3a
rs3788533	22:38523246	C/G	PLA2G6	intron,untranslated-3	0.960	1.01572	0.0108	0.1486		4
rs3827354	22:38523065	T/C	PLA2G6	intron,near-gene-3	0.957	1.01603	0.0110	0.1469		1f
rs4378	22:38568703	A/G	PLA2G6	intron	0.995	1.00290	0.0180	0.8722		5
rs4379	22:38569171	T/C	PLA2G6	intron	0.999	1.01939	0.0106	0.06945		4
rs4380	22:38569529	T/C	PLA2G6	intron	0.992	1.01857	0.0106	0.08277		4
rs4382	22:38570842	T/C	PLA2G6	intron	0.999	1.01928	0.0106	0.07048		5
rs4384	22:38572440	C/G	PLA2G6	intron	0.999	0.98570	0.0106	0.1732		2b
rs4385	22:38573229	T/C	PLA2G6	intron	0.970	1.01959	0.0107	0.07167		5
rs4497	22:38563541	A/G	PLA2G6	intron	0.998	0.99720	0.0179	0.877		5
rs4610161	22:38513840	T/C	PLA2G6	intron	0.982	1.02224	0.0112	0.05015		7
rs4820314	22:38518538	A/G	PLA2G6	intron	1.000	0.98373	0.0113	0.1455		5
rs4820315	22:38518731	T/C	PLA2G6	intron	1.000	0.98354	0.0112	0.1401		5
rs4820316	22:38521077	T/C	PLA2G6	intron	0.655	1.09856	0.0303	0.00194		4
rs4820318	22:38570313	A/G	PLA2G6	intron	0.999	0.97863	0.0109	0.04759		7
rs4820320	22:38572977	A/G	PLA2G6	intron	0.994	0.98817	0.0109	0.2757		7
rs4820321	22:38579569	A/T	PLA2G6	intron,near-gene-5	0.985	0.99074	0.0115	0.4203		7
rs4821740	22:38514423	C/G	PLA2G6	intron	0.988	1.02122	0.0112	0.05943		5
rs4821741	22:38514745	A/G	PLA2G6	intron	0.980	1.02030	0.0107	0.06166		6
rs4821742	22:38514839	T/C	PLA2G6	intron	0.982	1.02000	0.0107	0.06431		7
rs4821743	22:38514906	A/G	PLA2G6	intron	0.982	1.02000	0.0107	0.06435		7
rs4821751	22:38564457	T/C	PLA2G6	intron	1.000	1.01918	0.0109	0.08185		5
rs4821752	22:38579394	A/G	PLA2G6	intron,near-gene-5	0.999	1.00975	0.0114	0.3933		7
rs4821753	22:38579434	A/G	PLA2G6	intron,near-gene-5	0.992	0.99005	0.0114	0.3781		7
rs4821754	22:38581503	A/G	PLA2G6	intron	0.996	0.99681	0.0115	0.7812		5
rs4821756	22:38588159	C/G	PLA2G6	near-gene-5	0.993	1.02491	0.0179	0.1696		4
rs4821757	22:38588510	A/G	PLA2G6	near-gene-5	0.996	0.98787	0.0153	0.4241		1f
rs57976789	22:38583466	T/C	PLA2G6	intron	0.994	1.01542	0.0273	0.5747		3a
rs58518707	22:38551707	A/C	PLA2G6	intron	0.946	1.00180	0.0192	0.9246		5
rs58594977	22:38583476	A/C	PLA2G6	intron	0.994	1.01542	0.0273	0.5749		3a
rs58901312	22:38551846	T/C	PLA2G6	intron	0.935	1.00200	0.0194	0.9172		5
rs5995542	22:38558141	T/C	PLA2G6	intron	1.000	0.98089	0.0109	0.07738		5
rs6001031	22:38556260	T/G	PLA2G6	intron	1.000	1.01959	0.0109	0.07544		7
rs6001035	22:38562425	A/G	PLA2G6	intron	1.000	1.01918	0.0109	0.08165		5
rs6001038	22:38570585	A/G	PLA2G6	intron	0.999	1.01928	0.0106	0.07053		6
rs6001040	22:38573531	A/G	PLA2G6	intron	0.996	0.98807	0.0109	0.2718		6
rs60603980	22:38581862	I2/D	PLA2G6	intron	0.980	1.01359	0.0108	0.2131		-
rs61141120	22:38560911	T/C	PLA2G6	intron	0.999	1.00290	0.0179	0.8709		5
rs62228622	22:38567625	A/G	PLA2G6	intron	0.708	0.97336	0.0358	0.45		7
rs7286105	22:38557821	A/G	PLA2G6	intron	1.000	1.01928	0.0109	0.08151		6
rs7288242	22:38584364	C/G	PLA2G6	intron	0.761	0.95619	0.0630	0.477		7
rs73154425	22:38572672	T/G	PLA2G6	intron	0.994	1.01694	0.0275	0.5418		3a
rs73154428	22:38575412	T/C	PLA2G6	intron	0.994	0.98383	0.0275	0.5519		5
rs73172636	22:38553397	T/C	PLA2G6	intron	0.615	1.04331	0.0419	0.3121		6
rs73172642	22:38559079	C/G	PLA2G6	intron	0.998	1.00200	0.0180	0.9109		4
rs731821	22:38559448	A/C	PLA2G6	intron	1.000	0.98600	0.0110	0.2021		5
rs75265353	22:38510459	T/C	PLA2G6	intron	0.927	1.00200	0.0203	0.922		5
rs77330988	22:38549212	A/G	PLA2G6	intron	0.947	0.99621	0.0192	0.8441		6
rs77394551	22:38515651	C/G	PLA2G6	intron	0.969	0.99950	0.0192	0.9776		7
rs77852459	22:38510139	A/G	PLA2G6	intron	0.968	0.99890	0.0193	0.9552		5
rs78129837	22:38582940	T/C	PLA2G6	intron	0.642	1.01268	0.0328	0.7001		6
rs8135333	22:38525147	A/G	PLA2G6	intron	0.982	1.00020	0.0189	0.9917		5
rs8140036	22:38584704	T/C	PLA2G6	intron	0.995	0.98196	0.0272	0.5038		6
rs8142004	22:38574903	A/C	PLA2G6	intron	0.971	0.97863	0.0262	0.4102		5
rs8142389	22:38567892	T/C	PLA2G6	intron	0.639	0.99980	0.0346	0.9953		4
rs8142930	22:38514554	T/G	PLA2G6	intron	0.980	0.99920	0.0183	0.9639		5
rs9306323	22:38570021	T/C	PLA2G6	intron	0.970	1.01939	0.0361	0.5958		7
rs9306324	22:38583511	C/G	PLA2G6	intron	0.992	0.97492	0.0180	0.1572		4
rs9610907	22:38556536	T/G	PLA2G6	intron	0.983	1.01227	0.0371	0.7427		6
rs9610908	22:38556835	C/G	PLA2G6	intron	0.983	0.98069	0.0359	0.5862		7
rs9610909	22:38558176	A/C	PLA2G6	intron	0.982	0.98324	0.0361	0.6403		3a
rs9610910	22:38575403	T/G	PLA2G6	intron	0.959	1.02460	0.0364	0.5046		5
rs9610911	22:38575634	A/G	PLA2G6	intron	0.997	1.01217	0.0109	0.2665		6
rs9619724	22:38517880	T/G	PLA2G6	intron	0.989	1.01959	0.0107	0.06957		5
rs9622726	22:38506688	T/C	PLA2G6	intron,near-gene-5	0.969	1.01400	0.0114	0.2255		4
rs9622728	22:38513998	A/G	PLA2G6	intron	0.978	0.98059	0.0113	0.08197		6
rs9622729	22:38514000	A/G	PLA2G6	intron	0.977	0.98059	0.0113	0.08207		6
rs9622731	22:38515596	A/G	PLA2G6	intron	0.980	1.01939	0.0106	0.07088		7
rs9622732	22:38524149	C/G	PLA2G6	intron	1.000	0.98216	0.0112	0.11		5
rs9622743	22:38557602	A/G	PLA2G6	intron	0.839	1.01207	0.0267	0.6543		7
rs9622746	22:38564041	C/G	PLA2G6	intron	1.000	1.02112	0.0111	0.06013		1f
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
22196331	GWAS	177 cases; 436 controls
Reference	Study type	Sample size

eQTL Information