PITPNM2

Basic Information

Gene Symbol	PITPNM2
Entrez Id	57605
Position	chr12:123468027..123594975
Description	phosphatidylinositol transfer protein, membrane-associated 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10773921	12:123541606	T/C	PITPNM2	intron	0.995	0.92645	0.0114	2.025E-11		7
rs11061244	12:123478378	A/G	PITPNM2	intron	0.982	1.03884	0.0291	0.1903		4
rs11061275	12:123485193	A/G	PITPNM2	intron	0.993	0.96522	0.0293	0.2264		5
rs11061350	12:123500882	T/G	PITPNM2	intron	0.866	0.98748	0.0268	0.6377		6
rs112229542	12:123514174	A/G	PITPNM2	intron	0.681	0.90312	0.0505	0.0436		6
rs112484459	12:123488399	A/C	PITPNM2	intron	0.625	0.96802	0.0492	0.5086		5
rs112753273	12:123504842	A/G	PITPNM2	intron	0.997	1.04123	0.0291	0.1653		6
rs117065261	12:123587714	A/G	PITPNM2	intron	0.806	1.04749	0.0459	0.312		5
rs117379455	12:123545899	A/G	PITPNM2	intron	0.758	1.00733	0.0319	0.8184		5
rs117559704	12:123522924	A/G	PITPNM2	intron	0.601	1.02265	0.0470	0.6334		5
rs117689661	12:123585705	T/C	PITPNM2	intron	0.773	0.97219	0.0296	0.3415		6
rs117992630	12:123493772	A/G	PITPNM2	intron	0.841	0.99840	0.0479	0.9736		5
rs118149403	12:123554695	T/C	PITPNM2	intron	0.779	1.02685	0.0296	0.3709		2a
rs12372667	12:123589293	T/C	PITPNM2	intron	0.985	0.95858	0.0293	0.1487		7
rs12423255	12:123595064	A/G	PITPNM2	near-gene-5	0.861	0.95877	0.0128	0.0009596		5
rs12425009	12:123502044	T/C	PITPNM2	intron	0.992	0.92608	0.0114	1.686E-11		5
rs12425850	12:123501972	T/C	PITPNM2	intron	0.992	1.07993	0.0114	1.628E-11		5
rs1260294	12:123560289	T/C	PITPNM2	intron,untranslated-5	0.988	0.93613	0.0133	6.578E-7		4
rs12811109	12:123471094	A/G	PITPNM2	coding-synon	0.979	1.06801	0.0134	9.286E-7		5
rs12820906	12:123493123	A/G	PITPNM2	intron	0.961	0.93904	0.0125	4.563E-7		5
rs12828755	12:123470586	T/C	PITPNM2	coding-synon	0.930	1.06780	0.0135	1.219E-6		5
rs139063938	12:123519172	C/G	PITPNM2	untranslated-5	0.688	1.10893	0.0352	0.003308		-
rs140889136	12:123516741	A/G	PITPNM2	intron	0.756	1.11382	0.0614	0.07907		-
rs140979865	12:123581879	A/C	PITPNM2	intron	0.698	1.00642	0.0399	0.8717		-
rs146257980	12:123594341	T/C	PITPNM2	intron	0.824	0.90023	0.0424	0.01323		-
rs1568918	12:123469141	T/C	PITPNM2	untranslated-3	0.967	1.11795	0.0268	0.00003237		5
rs1617156	12:123590165	T/C	PITPNM2	intron,near-gene-5	0.989	1.07616	0.0127	8.518E-9		3a
rs1630820	12:123516917	C/G	PITPNM2	intron	0.893	1.07337	0.0126	1.757E-8		6
rs1790094	12:123586688	T/C	PITPNM2	intron	0.991	1.07713	0.0114	7.611E-11		6
rs1790106	12:123591596	T/G	PITPNM2	intron,near-gene-5	0.991	0.92765	0.0114	4.661E-11		2b
rs184369699	12:123562050	A/G	PITPNM2	intron,near-gene-5	0.667	0.98946	0.0643	0.8687		-
rs186699378	12:123513941	T/C	PITPNM2	intron	0.926	0.93211	0.0526	0.1813		-
rs1984658	12:123483426	A/G	PITPNM2	intron	0.988	0.92700	0.0114	3.393E-11		6
rs28755851	12:123486282	A/T	PITPNM2	intron	0.993	1.07896	0.0114	2.793E-11		5
rs34580115	12:123525280	A/G	PITPNM2	intron	0.846	1.05012	0.0129	0.0001526		4
rs35246351	12:123555116	T/C	PITPNM2	intron	0.665	1.08296	0.0402	0.04737		5
rs3897102	12:123492112	T/C	PITPNM2	intron	0.902	0.96397	0.0113	0.001154		5
rs4148857	12:123539955	T/C	PITPNM2	intron	0.991	0.89503	0.0264	0.00002688		3a
rs4148858	12:123540022	A/G	PITPNM2	intron	0.991	1.11695	0.0264	0.00002833		2b
rs4148859	12:123542492	T/C	PITPNM2	intron	0.990	0.89503	0.0264	0.00002649		4
rs4148864	12:123580657	T/C	PITPNM2	intron	0.993	1.11605	0.0264	0.00003129		7
rs4759362	12:123508061	C/G	PITPNM2	intron,untranslated-5	0.994	1.11762	0.0263	0.00002307		6
rs4759403	12:123552815	A/C	PITPNM2	intron	0.654	0.98010	0.0148	0.1747		7
rs520088	12:123522150	C/G	PITPNM2	intron	0.993	1.07702	0.0127	5.725E-9		1f
rs523682	12:123522523	T/C	PITPNM2	intron	0.998	0.96300	0.0290	0.1943		5
rs61751326	12:123480034	A/G	PITPNM2	coding-synon	0.993	0.96493	0.0293	0.2231		5
rs61955214	12:123482424	T/C	PITPNM2	intron	0.969	1.07444	0.0113	2.416E-10		5
rs61955217	12:123504147	T/C	PITPNM2	intron	0.781	0.95715	0.0387	0.2578		5
rs61955223	12:123561248	A/G	PITPNM2	intron,near-gene-5	0.613	0.96948	0.0648	0.6322		4
rs641760	12:123518866	T/C	PITPNM2	intron	0.991	1.07702	0.0128	5.937E-9		4
rs655293	12:123528405	A/G	PITPNM2	intron	0.993	0.92830	0.0127	5.129E-9		1d
rs67306085	12:123468733	T/C	PITPNM2	untranslated-3	0.908	0.93585	0.0331	0.04534		4
rs71444568	12:123533239	A/G	PITPNM2	intron	0.988	1.07240	0.0130	8.122E-8		7
rs73230029	12:123472472	A/G	PITPNM2	intron	0.656	0.87652	0.0510	0.009787		5
rs73230051	12:123561638	T/C	PITPNM2	intron,near-gene-5	0.858	0.95810	0.0128	0.0008163		4
rs73230058	12:123593899	T/C	PITPNM2	intron	0.712	0.92450	0.0195	0.00005644		5
rs7398697	12:123502904	T/C	PITPNM2	intron	0.994	1.11795	0.0263	0.00002194		6
rs74654764	12:123517345	T/C	PITPNM2	intron	0.994	1.11818	0.0263	0.00002099		4
rs74912794	12:123521867	A/G	PITPNM2	intron	0.806	0.95466	0.0459	0.3125		6
rs74954864	12:123480323	T/C	PITPNM2	intron	0.988	1.12199	0.0261	0.00001058		5
rs75200457	12:123545834	T/C	PITPNM2	intron	0.758	1.00733	0.0319	0.8184		5
rs75338281	12:123507484	A/G	PITPNM2	intron,untranslated-5	0.991	1.11728	0.0264	0.00002649		7
rs75589918	12:123594402	C/G	PITPNM2	intron	0.989	1.11829	0.0264	0.00002292		4
rs76573394	12:123516411	T/C	PITPNM2	intron	0.688	1.10893	0.0352	0.003304		5
rs77064381	12:123554082	T/C	PITPNM2	intron	0.655	1.00833	0.0261	0.7502		4
rs77193970	12:123516317	A/G	PITPNM2	intron	0.994	1.11807	0.0263	0.00002121		5
rs77402445	12:123554186	T/C	PITPNM2	intron	0.991	1.11617	0.0265	0.00003288		3a
rs77674871	12:123488393	T/C	PITPNM2	intron	0.615	1.02316	0.0248	0.3563		7
rs78351440	12:123495289	A/C	PITPNM2	intron,near-gene-5	0.984	1.12277	0.0263	0.00001056		5
rs7964876	12:123558705	T/C	PITPNM2	intron	0.890	1.05475	0.0216	0.01337		4
rs79769662	12:123586782	A/G	PITPNM2	intron	0.702	1.02051	0.0420	0.6293		5
rs80326885	12:123532142	T/C	PITPNM2	intron	0.688	0.90168	0.0352	0.003275		5
rs883263	12:123485188	A/G	PITPNM2	intron	0.992	1.07433	0.0128	2.06E-8		5
rs937564	12:123477311	T/C	PITPNM2	intron	0.989	1.07638	0.0128	9.265E-9		5
rs947800	12:123582855	C/G	PITPNM2	intron	0.993	0.95676	0.0290	0.1275		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information