PIK3C3

Basic Information

Gene Symbol	PIK3C3
Entrez Id	5289
Position	chr18:39535199..39661448
Description	phosphatidylinositol 3-kinase, catalytic subunit type 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10502776	18:39578277	A/G	PIK3C3	intron	0.994	1.03128	0.0323	0.3404		6
rs10775471	18:39583699	A/G	PIK3C3	intron	0.991	1.01430	0.0123	0.2455		7
rs11082256	18:39563180	A/T	PIK3C3	intron	0.999	0.96541	0.0156	0.02419		4
rs11082257	18:39570683	A/G	PIK3C3	intron	0.994	0.98560	0.0122	0.2346		5
rs111906288	18:39633640	A/G	PIK3C3	intron	0.641	0.98699	0.0608	0.8295		7
rs111995394	18:39629423	T/C	PIK3C3	intron	0.940	1.00230	0.0213	0.9146		7
rs112109041	18:39572020	T/C	PIK3C3	intron	0.638	1.02224	0.0437	0.6154		4
rs112971831	18:39602145	A/G	PIK3C3	intron	0.941	1.00220	0.0213	0.9178		6
rs116898062	18:39594864	A/G	PIK3C3	intron	0.613	0.99203	0.0491	0.8713		6
rs117022760	18:39545774	T/C	PIK3C3	intron	0.614	0.89288	0.0460	0.01383		5
rs117083836	18:39591965	A/G	PIK3C3	intron	0.871	0.94876	0.0469	0.2615		6
rs117160367	18:39598203	A/C	PIK3C3	intron	0.680	1.11115	0.0711	0.1382		7
rs117358762	18:39608982	A/G	PIK3C3	intron	0.660	0.97356	0.0271	0.3226		5
rs117405148	18:39571724	A/T	PIK3C3	intron	0.901	1.04760	0.0602	0.4397		7
rs117789293	18:39633909	A/G	PIK3C3	intron	0.862	0.94384	0.0478	0.2265		7
rs12454181	18:39580736	T/C	PIK3C3	intron	0.991	1.01471	0.0123	0.2338		6
rs12455038	18:39560125	T/G	PIK3C3	intron	0.994	0.98551	0.0122	0.2335		6
rs12455083	18:39627244	T/C	PIK3C3	intron	0.990	1.01501	0.0122	0.2234		6
rs12456084	18:39646221	A/G	PIK3C3	intron	0.994	1.01461	0.0121	0.2304		7
rs12456573	18:39620376	A/T	PIK3C3	intron	0.992	1.01593	0.0122	0.1962		7
rs12456761	18:39580458	T/G	PIK3C3	intron	0.991	0.98551	0.0123	0.2338		7
rs12456934	18:39634992	A/G	PIK3C3	intron	0.993	0.98432	0.0122	0.1952		6
rs12457525	18:39590776	A/C	PIK3C3	intron	0.992	0.98541	0.0122	0.2301		7
rs12605021	18:39599080	A/G	PIK3C3	intron	0.955	0.96725	0.0337	0.3226		5
rs12606434	18:39616927	A/C	PIK3C3	intron	1.000	1.03998	0.0157	0.01225		7
rs12607810	18:39554517	T/C	PIK3C3	intron	0.994	0.96532	0.0156	0.02404		6
rs12953847	18:39534108	A/G	PIK3C3	near-gene-5	1.000	0.96358	0.0156	0.01697		7
rs12954899	18:39582087	A/G	PIK3C3	intron	0.999	1.03231	0.0172	0.06525		5
rs12959405	18:39630062	T/C	PIK3C3	intron	0.994	1.03717	0.0175	0.03667		6
rs12962602	18:39601573	C/G	PIK3C3	intron	1.000	1.03790	0.0156	0.01744		5
rs12964834	18:39654809	A/G	PIK3C3	intron	0.994	0.98511	0.0121	0.2156		6
rs12966100	18:39658069	T/C	PIK3C3	intron	0.989	0.96783	0.0174	0.05946		7
rs12966303	18:39627931	A/G	PIK3C3	intron	0.990	1.01511	0.0122	0.2187		5
rs139618012	18:39534183	A/G	PIK3C3	near-gene-5	0.931	0.97229	0.0277	0.3101		-
rs141347467	18:39624041	A/G	PIK3C3	intron	0.843	0.95313	0.0493	0.3302		-
rs141826324	18:39557811	T/C	PIK3C3	intron	0.786	0.89467	0.0579	0.05468		-
rs142816979	18:39590390	T/C	PIK3C3	intron	0.601	0.96098	0.0311	0.2002		-
rs145504382	18:39654056	A/G	PIK3C3	intron	0.906	1.05591	0.0597	0.362		-
rs147437649	18:39652717	A/C	PIK3C3	intron	0.864	1.05390	0.0483	0.2776		-
rs150604173	18:39645289	T/C	PIK3C3	intron	0.764	0.85753	0.0597	0.01005		-
rs1544260	18:39636480	A/G	PIK3C3	intron	0.999	0.96108	0.0157	0.01131		7
rs16960213	18:39583925	T/C	PIK3C3	intron	0.986	0.94611	0.0346	0.109		7
rs16975459	18:39548277	A/C	PIK3C3	intron	0.999	1.03655	0.0156	0.02146		5
rs16975462	18:39548376	A/G	PIK3C3	intron	0.989	1.03863	0.0325	0.2429		6
rs16975474	18:39559487	A/G	PIK3C3	intron	0.994	0.98541	0.0122	0.2297		6
rs17662288	18:39570304	T/C	PIK3C3	intron	0.662	1.02665	0.0269	0.3279		6
rs1787173	18:39606343	T/C	PIK3C3	intron	0.996	0.99392	0.0109	0.5776		5
rs1941526	18:39652939	T/C	PIK3C3	intron	0.994	1.01532	0.0121	0.2102		7
rs1942151	18:39552586	T/C	PIK3C3	intron	0.993	1.01450	0.0122	0.2382		4
rs1942152	18:39549079	A/G	PIK3C3	intron	0.993	0.98580	0.0122	0.2435		7
rs1984366	18:39640560	T/C	PIK3C3	intron	0.992	1.01582	0.0122	0.1976		7
rs1984367	18:39640030	A/G	PIK3C3	intron	0.992	1.01593	0.0122	0.1954		6
rs2156015	18:39605413	A/G	PIK3C3	intron	0.992	0.98511	0.0122	0.2192		5
rs28438873	18:39640600	A/G	PIK3C3	intron	0.998	0.96137	0.0157	0.01188		6
rs28442055	18:39656161	T/C	PIK3C3	intron	0.870	1.00582	0.0126	0.647		6
rs28541909	18:39640485	A/G	PIK3C3	intron	0.998	1.03946	0.0157	0.01336		6
rs28708684	18:39622816	A/C	PIK3C3	intron	0.990	1.04154	0.0326	0.2112		7
rs34205132	18:39584412	T/C	PIK3C3	coding-synon	0.933	1.04091	0.0199	0.04351		7
rs34966612	18:39601988	T/C	PIK3C3	intron	0.992	1.01450	0.0122	0.2406		7
rs35269653	18:39638492	T/G	PIK3C3	intron	0.997	1.03345	0.0172	0.05658		7
rs35617320	18:39538043	A/G	PIK3C3	intron	0.997	1.03376	0.0174	0.05675		6
rs3813065	18:39534825	T/C	PIK3C3	near-gene-5	1.000	0.96368	0.0155	0.01719		4
rs3819162	18:39584264	T/C	PIK3C3	intron	1.000	0.96252	0.0156	0.01465		7
rs4121817	18:39588988	A/G	PIK3C3	intron	1.000	0.96223	0.0156	0.01394		6
rs4283305	18:39632291	A/G	PIK3C3	intron	0.998	0.96377	0.0175	0.03471		2a
rs4513183	18:39636302	A/C	PIK3C3	intron	0.999	1.04039	0.0157	0.01146		7
rs474605	18:39612720	A/G	PIK3C3	intron	0.961	0.99571	0.0109	0.6898		7
rs4890221	18:39563479	T/G	PIK3C3	intron	0.990	0.98472	0.0122	0.2089		6
rs4890377	18:39551673	T/C	PIK3C3	intron	0.993	0.98580	0.0122	0.2437		6
rs4890378	18:39566543	A/T	PIK3C3	intron	0.993	1.01501	0.0122	0.2233		7
rs4890379	18:39626301	A/T	PIK3C3	intron	0.989	1.01420	0.0122	0.2486		6
rs491342	18:39629939	A/G	PIK3C3	intron	0.854	0.99312	0.0115	0.5463		6
rs4988829	18:39634102	A/C	PIK3C3	intron	0.880	0.98255	0.0132	0.1828		6
rs4988830	18:39634096	A/C	PIK3C3	intron	0.899	0.98946	0.0130	0.4127		6
rs500086	18:39637068	A/G	PIK3C3	intron	0.995	0.99352	0.0109	0.5538		7
rs5004531	18:39645094	A/G	PIK3C3	intron	0.993	0.98580	0.0121	0.2373		7
rs510946	18:39571373	A/G	PIK3C3	intron	0.993	1.01521	0.0122	0.2164		7
rs515626	18:39637545	T/C	PIK3C3	intron	0.996	0.99332	0.0109	0.5394		7
rs517864	18:39596289	A/G	PIK3C3	intron	0.996	0.99352	0.0109	0.5538		7
rs523425	18:39602237	A/G	PIK3C3	intron	0.996	0.99322	0.0109	0.5354		7
rs524793	18:39568444	A/G	PIK3C3	intron	0.997	0.99452	0.0109	0.6119		6
rs525399	18:39636365	A/C	PIK3C3	intron	0.996	0.99342	0.0109	0.5475		7
rs58838212	18:39634092	A/G	PIK3C3	intron	0.648	0.94705	0.0405	0.1795		6
rs58969531	18:39642286	T/C	PIK3C3	intron	0.953	1.01786	0.0125	0.1544		7
rs60424202	18:39634114	A/C	PIK3C3	intron	0.899	0.98334	0.0130	0.195		6
rs60861018	18:39606908	T/C	PIK3C3	intron	0.992	1.01532	0.0122	0.2128		6
rs609301	18:39564687	A/G	PIK3C3	intron	0.997	0.99452	0.0109	0.6132		6
rs61107251	18:39642288	A/C	PIK3C3	intron	0.953	1.01786	0.0125	0.1544		7
rs61682064	18:39653489	T/C	PIK3C3	intron	0.998	0.96204	0.0157	0.01376		7
rs620052	18:39646964	A/G	PIK3C3	intron	0.985	1.00371	0.0109	0.7355		7
rs62082280	18:39587976	T/C	PIK3C3	intron	0.874	0.93622	0.0219	0.002646		7
rs62082282	18:39594127	A/G	PIK3C3	intron	0.992	1.01491	0.0122	0.2249		7
rs62082284	18:39603703	A/G	PIK3C3	intron	0.999	0.96464	0.0175	0.03951		7
rs62082292	18:39622314	T/C	PIK3C3	intron	0.998	1.03334	0.0172	0.05748		7
rs62082876	18:39642222	A/T	PIK3C3	intron	0.983	1.03448	0.0173	0.05061		6
rs62082880	18:39655171	T/C	PIK3C3	intron	0.994	0.98521	0.0121	0.2182		7
rs622939	18:39641321	T/C	PIK3C3	intron	0.994	1.00733	0.0109	0.5039		7
rs627099	18:39653223	C/G	PIK3C3	intron	0.994	0.98472	0.0121	0.2046		7
rs629481	18:39560754	A/G	PIK3C3	intron	0.988	0.99700	0.0110	0.7833		6
rs638763	18:39564161	A/G	PIK3C3	intron	0.988	0.99681	0.0110	0.7714		6
rs639656	18:39629140	T/C	PIK3C3	intron	0.988	0.99342	0.0110	0.5473		6
rs639660	18:39590021	A/T	PIK3C3	intron	0.992	1.01481	0.0122	0.2289		6
rs647512	18:39639476	A/G	PIK3C3	intron	0.996	0.99332	0.0109	0.542		5
rs649610	18:39572258	A/G	PIK3C3	intron	0.998	0.99432	0.0109	0.5993		4
rs650586	18:39652713	T/G	PIK3C3	intron	0.994	1.01521	0.0121	0.212		5
rs657164	18:39550922	T/G	PIK3C3	intron	0.993	0.98600	0.0122	0.248		5
rs66960332	18:39645686	A/G	PIK3C3	intron	0.993	1.01450	0.0121	0.2344		6
rs7237780	18:39605056	A/G	PIK3C3	intron	0.999	1.03832	0.0157	0.01658		7
rs7237783	18:39605066	A/G	PIK3C3	intron	1.000	1.03894	0.0157	0.01453		7
rs7241401	18:39651014	A/T	PIK3C3	intron	0.998	0.96194	0.0157	0.0135		7
rs72481235	18:39637411	A/T	PIK3C3	intron	0.803	0.98354	0.0362	0.6463		7
rs72893445	18:39620932	A/G	PIK3C3	intron	0.856	0.98423	0.0162	0.3274		6
rs72907542	18:39547926	A/G	PIK3C3	intron	0.638	1.01066	0.0210	0.6135		4
rs72907555	18:39561097	A/G	PIK3C3	intron	0.931	1.02994	0.0277	0.2874		7
rs73454598	18:39537513	A/G	PIK3C3	intron	0.988	1.03873	0.0325	0.2423		6
rs74364391	18:39565176	T/C	PIK3C3	intron	0.679	1.03200	0.0371	0.3959		7
rs74427360	18:39596124	T/C	PIK3C3	intron	0.951	1.00371	0.0227	0.8695		6
rs75037703	18:39635694	A/G	PIK3C3	intron	0.859	1.07047	0.0455	0.1341		7
rs75191687	18:39551911	A/G	PIK3C3	intron	0.845	0.93379	0.0421	0.1036		7
rs76209627	18:39546162	T/C	PIK3C3	intron	0.933	0.98738	0.0130	0.3291		6
rs76680572	18:39633186	T/C	PIK3C3	intron	0.824	1.04081	0.0434	0.357		5
rs76692125	18:39562230	A/G	PIK3C3	intron	0.735	0.99800	0.0369	0.9563		7
rs76840130	18:39595251	C/G	PIK3C3	intron	0.941	0.99780	0.0213	0.9173		6
rs76853733	18:39638115	T/C	PIK3C3	intron	0.944	1.00270	0.0213	0.8979		7
rs77337833	18:39548683	A/G	PIK3C3	intron	0.842	0.93165	0.0420	0.09168		7
rs78761669	18:39589896	A/G	PIK3C3	intron	0.941	1.00220	0.0213	0.9173		5
rs78985835	18:39551326	T/G	PIK3C3	intron	0.937	0.99720	0.0214	0.8973		6
rs80163566	18:39585125	A/G	PIK3C3	intron	0.840	1.04865	0.0495	0.3372		6
rs80182297	18:39548520	T/G	PIK3C3	intron	0.826	1.04373	0.0445	0.3362		7
rs80198189	18:39615817	T/C	PIK3C3	intron	0.646	0.97268	0.0613	0.6511		7
rs8087875	18:39630347	A/G	PIK3C3	intron	1.000	1.03977	0.0157	0.0127		7
rs8092954	18:39654385	A/G	PIK3C3	intron	0.996	1.03925	0.0157	0.01436		6
rs8093251	18:39640155	A/G	PIK3C3	intron	0.992	0.98442	0.0122	0.1975		7
rs8095411	18:39600755	A/G	PIK3C3	intron	1.000	1.03769	0.0156	0.01789		6
rs9304263	18:39539833	A/G	PIK3C3	intron	0.991	1.01440	0.0122	0.2428		7
rs9646518	18:39616158	T/C	PIK3C3	intron	0.999	0.96483	0.0175	0.04046		6
rs9807279	18:39539869	A/G	PIK3C3	intron	0.992	0.98649	0.0122	0.2659		6
rs9947764	18:39614119	A/G	PIK3C3	intron	0.642	1.02994	0.0612	0.6295		7
rs9949409	18:39599054	A/G	PIK3C3	intron	0.991	0.96098	0.0324	0.2197		5
rs9949895	18:39562373	C/G	PIK3C3	intron	1.000	1.03790	0.0156	0.01755		7
rs9956832	18:39564876	A/C	PIK3C3	intron	1.010	0.96368	0.0157	0.0184		7
rs9958749	18:39598601	T/C	PIK3C3	intron	0.991	1.03894	0.0325	0.2393		5
rs9964331	18:39605626	T/C	PIK3C3	intron	1.000	1.03790	0.0156	0.01745		4
rs9965466	18:39549815	A/G	PIK3C3	intron	0.989	1.03873	0.0325	0.2416		7
rs9966146	18:39567303	T/C	PIK3C3	intron	0.985	0.94715	0.0346	0.1161		6
rs9989595	18:39601533	A/T	PIK3C3	intron	0.992	0.98570	0.0122	0.2404		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
20489179	GWAS	977 cases; 2000 controls
Reference	Study type	Sample size

eQTL Information