PGBD1

Basic Information

Gene Symbol	PGBD1
Entrez Id	84547
Position	chr6:28249314..28270326
Description	piggyBac transposable element derived 1
Gene type	protein-coding

SNP Information

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SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1062169	6:28270251	A/G	PGBD1	untranslated-3	1.010	0.97035	0.0163	0.06493		7
rs114972842	6:28259505	A/G	PGBD1	intron	0.817	0.96986	0.0321	0.3399		7
rs11755032	6:28255277	T/C	PGBD1	intron	1.000	1.01654	0.0250	0.5113		5
rs11757730	6:28259533	A/G	PGBD1	intron	1.000	0.97590	0.0154	0.114		7
rs13207345	6:28265572	T/C	PGBD1	intron	1.010	0.80848	0.0199	1.47E-26		7
rs13211507	6:28257377	T/C	PGBD1	intron	1.010	1.23183	0.0198	6.281E-26		6
rs144130050	6:28264188	T/C	PGBD1	intron	0.711	1.03272	0.0486	0.5079		-
rs146249461	6:28270517	T/C	PGBD1	near-gene-3	0.994	1.03262	0.0402	0.4245		-
rs16893917	6:28269407	A/G	PGBD1	missense	1.000	1.01776	0.0227	0.4371		7
rs16893929	6:28270817	T/C	PGBD1	near-gene-3	1.000	1.01796	0.0227	0.432		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Showing 1 to 10 of 49 entries

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Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
21489405	GWAS	834 cases; 672 controls
Reference	Study type	Sample size

eQTL Information