PCGF6

Basic Information

Gene Symbol	PCGF6
Entrez Id	84108
Position	chr10:105062553..105110891
Description	polycomb group ring finger 6
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10883855	10:105092447	T/C	PCGF6	intron	1.000	1.03614	0.0110	0.001239		6
rs112186664	10:105076338	T/C	PCGF6	intron	0.852	1.07638	0.0522	0.1586		7
rs112940311	10:105064294	T/C	PCGF6	intron	0.998	1.03056	0.0106	0.004419		7
rs113555008	10:105079130	A/G	PCGF6	intron	0.987	0.97932	0.0169	0.2147		7
rs116120213	10:105101980	T/C	PCGF6	intron	0.918	1.01227	0.0465	0.7934		7
rs116889583	10:105105304	A/G	PCGF6	intron	0.989	1.05380	0.0322	0.1042		7
rs116935979	10:105081105	A/G	PCGF6	intron	0.986	0.94696	0.0323	0.09134		6
rs117294680	10:105107438	T/C	PCGF6	intron	0.976	0.94933	0.0396	0.1887		6
rs117502120	10:105103698	C/G	PCGF6	intron	0.947	1.18827	0.0445	0.0001062		7
rs117618769	10:105078594	A/G	PCGF6	intron	0.604	1.01430	0.0646	0.8259		7
rs117848719	10:105075071	T/C	PCGF6	intron	0.848	1.00521	0.0319	0.8695		6
rs117870499	10:105066738	A/G	PCGF6	intron	0.922	0.95476	0.0282	0.1008		7
rs118129511	10:105067274	T/C	PCGF6	intron	0.917	0.84959	0.0424	0.0001186		7
rs12220267	10:105075712	T/C	PCGF6	intron	1.000	0.97171	0.0112	0.01044		6
rs12258092	10:105104083	T/C	PCGF6	intron	1.000	0.97054	0.0106	0.004681		7
rs12268583	10:105079162	T/C	PCGF6	intron	1.000	0.97093	0.0106	0.005207		6
rs138123250	10:105087582	C/G	PCGF6	intron	0.986	0.94658	0.0323	0.08902		-
rs138538313	10:105068233	A/G	PCGF6	intron	0.749	0.94715	0.0390	0.164		-
rs139834723	10:105095180	A/G	PCGF6	intron	0.698	1.05075	0.0319	0.1206		-
rs145263159	10:105084449	A/G	PCGF6	intron	0.756	1.04477	0.0260	0.0924		-
rs147124747	10:105068219	A/G	PCGF6	intron	0.660	0.84223	0.0545	0.001631		-
rs150548479	10:105100295	T/C	PCGF6	intron	0.866	1.14683	0.0674	0.04206		-
rs150766911	10:105092789	T/C	PCGF6	intron	0.915	1.01025	0.0471	0.8292		-
rs150787616	10:105078946	A/G	PCGF6	intron	0.719	0.99223	0.0517	0.8808		-
rs184206254	10:105088907	T/C	PCGF6	intron	0.809	1.06930	0.0600	0.2646		-
rs185874768	10:105075018	T/C	PCGF6	intron	0.780	1.01572	0.0551	0.7766		-
rs186778740	10:105097588	A/G	PCGF6	intron	0.930	0.99511	0.0269	0.8553		-
rs188921034	10:105093564	A/G	PCGF6	intron,near-gene-3	0.976	1.17468	0.0534	0.002576		-
rs193036899	10:105096004	A/T	PCGF6	intron	0.730	0.90457	0.0467	0.03163		-
rs34158009	10:105081277	T/C	PCGF6	intron	0.618	0.99332	0.0585	0.9092		7
rs41287490	10:105063279	T/C	PCGF6	ncRNA,untranslated-3	0.879	0.94516	0.0159	0.0003964		7
rs4420190	10:105085191	T/C	PCGF6	intron	0.948	0.97404	0.0128	0.03942		6
rs4917387	10:105108455	T/C	PCGF6	intron	0.999	1.03438	0.0106	0.001379		6
rs4918007	10:105107470	A/G	PCGF6	intron	1.000	1.02224	0.0105	0.03621		6
rs60388741	10:105104425	T/G	PCGF6	intron	0.981	0.97472	0.0106	0.01582		7
rs61350103	10:105069120	A/C	PCGF6	intron	1.000	1.03045	0.0106	0.004562		7
rs61869825	10:105073070	T/C	PCGF6	intron	1.000	0.97151	0.0112	0.009931		6
rs61869827	10:105079439	T/C	PCGF6	intron	1.000	1.02994	0.0106	0.005276		7
rs61869829	10:105084840	T/C	PCGF6	intron	0.996	0.96870	0.0106	0.002751		6
rs61869833	10:105095395	A/G	PCGF6	intron	0.785	1.05929	0.0369	0.1186		7
rs61869834	10:105095698	T/C	PCGF6	intron	0.979	1.01430	0.0186	0.4436		7
rs6584547	10:105065409	T/C	PCGF6	intron	1.000	0.97638	0.0105	0.0231		6
rs7093667	10:105080575	T/C	PCGF6	intron	1.000	1.03593	0.0110	0.001331		6
rs72846190	10:105079417	T/C	PCGF6	intron	0.978	0.96185	0.0124	0.001647		7
rs72846191	10:105081931	A/G	PCGF6	intron	0.980	1.03645	0.0344	0.2983		7
rs72846192	10:105091459	A/C	PCGF6	intron	0.943	0.97365	0.0128	0.03759		6
rs72846198	10:105098024	A/G	PCGF6	intron	1.000	0.97151	0.0112	0.009894		7
rs74693936	10:105078625	T/C	PCGF6	intron	0.910	0.96657	0.0216	0.1161		6
rs75383465	10:105089845	T/G	PCGF6	intron	0.802	0.89790	0.0485	0.02656		6
rs75890466	10:105076383	T/C	PCGF6	intron	0.987	0.97932	0.0169	0.2147		7
rs76695159	10:105070837	T/C	PCGF6	intron	0.987	0.98718	0.0164	0.4337		7
rs77328741	10:105066314	T/C	PCGF6	intron	0.986	1.01288	0.0164	0.4356		5
rs78742461	10:105075994	T/C	PCGF6	intron	0.762	0.90556	0.0382	0.009436		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information