PCGEM1

Basic Information

Gene Symbol	PCGEM1
Entrez Id	64002
Position	chr2:193614571..193641625
Description	PCGEM1, prostate-specific transcript (non-protein coding)
Gene type	ncRNA

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs115482874	2:193617117	T/C	PCGEM1	intron	0.789	1.00854	0.0300	0.7765		6
rs116594254	2:193632920	T/C	PCGEM1	intron	0.726	0.99094	0.0517	0.8596		7
rs12151687	2:193638662	T/C	PCGEM1	intron	0.976	0.98551	0.0244	0.5499		6
rs12693669	2:193624448	A/C	PCGEM1	intron	0.964	1.01806	0.0241	0.4582		7
rs13412668	2:193638445	A/T	PCGEM1	intron	0.990	1.02870	0.0106	0.007266		6
rs13419834	2:193640476	T/C	PCGEM1	ncRNA	0.994	0.97239	0.0105	0.007933		5
rs13426196	2:193617549	T/C	PCGEM1	intron	0.997	0.97035	0.0105	0.004268		7
rs140391655	2:193619516	A/C	PCGEM1	intron	0.822	1.05612	0.0337	0.1049		-
rs142082064	2:193618113	A/G	PCGEM1	intron	0.720	0.97795	0.0291	0.4439		-
rs150038562	2:193620663	A/G	PCGEM1	intron	0.723	0.95476	0.0527	0.379		-
rs1561509	2:193626079	T/G	PCGEM1	intron	0.996	1.02665	0.0105	0.01273		6
rs16834896	2:193634064	A/G	PCGEM1	intron	0.997	1.02737	0.0105	0.01021		7
rs16834898	2:193637288	A/C	PCGEM1	intron	0.984	0.97278	0.0106	0.009121		7
rs16834909	2:193639580	T/C	PCGEM1	intron	0.990	0.97472	0.0106	0.0156		7
rs17698450	2:193624766	T/C	PCGEM1	intron	0.822	0.94686	0.0337	0.105		6
rs17698462	2:193625157	C/G	PCGEM1	intron	0.813	1.00250	0.0154	0.8721		6
rs17698772	2:193640441	A/G	PCGEM1	ncRNA	0.932	0.99850	0.0341	0.9647		5
rs2033853	2:193622393	T/C	PCGEM1	intron	0.981	0.97502	0.0106	0.0175		6
rs34760717	2:193626948	T/C	PCGEM1	intron	0.605	0.99432	0.0429	0.8951		6
rs62179949	2:193633603	A/G	PCGEM1	intron	0.944	1.02000	0.0278	0.478		7
rs6414130	2:193623415	T/C	PCGEM1	intron	0.980	1.02439	0.0107	0.02402		7
rs6434568	2:193623352	A/C	PCGEM1	intron	0.998	1.02747	0.0105	0.01015		7
rs75665483	2:193616755	A/C	PCGEM1	intron	0.796	1.00000	0.0234	0.9989		7
rs7567586	2:193640080	T/C	PCGEM1	intron	0.994	0.97229	0.0105	0.007628		6
rs76753990	2:193621222	T/C	PCGEM1	intron	0.899	1.01694	0.0337	0.6179		7
rs79064528	2:193621184	A/G	PCGEM1	intron	0.778	0.97472	0.0267	0.3382		6
rs934947	2:193620808	T/C	PCGEM1	intron	0.998	0.97064	0.0105	0.004664		6
rs9808472	2:193637887	A/T	PCGEM1	intron	0.990	0.97239	0.0106	0.007886		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information