NTF3

Basic Information

Gene Symbol	NTF3
Entrez Id	4908
Position	chr12:5541280..5604465
Description	neurotrophin 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10161033	12:5599646	T/C	NTF3	intron	0.993	1.01319	0.0106	0.2165		5
rs10492095	12:5561200	T/C	NTF3	intron	1.000	0.99501	0.0115	0.6598		6
rs10735049	12:5553503	A/G	NTF3	intron	0.962	1.00070	0.0144	0.9611		7
rs10735050	12:5558306	C/G	NTF3	intron	0.989	0.98866	0.0113	0.3114		7
rs10744681	12:5554192	C/G	NTF3	intron	0.965	0.99940	0.0144	0.968		6
rs10744682	12:5555040	A/G	NTF3	intron	0.999	1.03894	0.0113	0.0007569		7
rs10744683	12:5567381	A/C	NTF3	intron	0.995	1.00160	0.0176	0.929		7
rs10744684	12:5572371	C/G	NTF3	intron	1.000	1.00401	0.0131	0.7621		7
rs10774327	12:5551065	A/G	NTF3	intron	0.968	1.02521	0.0140	0.07512		5
rs10774328	12:5552669	T/C	NTF3	intron	0.957	1.03593	0.0111	0.001419		7
rs10774329	12:5554678	T/G	NTF3	intron	0.982	1.00110	0.0143	0.9402		7
rs10774330	12:5557893	A/G	NTF3	intron	0.995	0.98748	0.0112	0.2641		5
rs10774331	12:5558518	T/C	NTF3	intron	0.987	0.98886	0.0113	0.3218		5
rs10774332	12:5563162	A/G	NTF3	intron	1.000	1.01136	0.0128	0.3775		5
rs10774333	12:5563167	A/G	NTF3	intron	1.000	0.98906	0.0128	0.3923		5
rs10774335	12:5622664	A/G	NTF3	intron	0.878	0.98049	0.0320	0.538		7
rs10774336	12:5626158	A/G	NTF3	intron	0.966	0.97804	0.0108	0.04065		5
rs10774337	12:5626326	C/G	NTF3	intron	0.966	0.97853	0.0108	0.04541		2b
rs10774338	12:5628214	T/G	NTF3	intron	0.904	0.98393	0.0309	0.6006		7
rs10774339	12:5630281	A/G	NTF3	intron	0.968	0.99144	0.0108	0.4274		5
rs10849268	12:5542307	C/G	NTF3	intron	0.935	0.97648	0.0136	0.08053		2b
rs10849269	12:5542534	T/C	NTF3	intron	0.941	0.98030	0.0135	0.1407		5
rs10849270	12:5552281	T/C	NTF3	intron	0.952	1.03479	0.0111	0.001983		7
rs10849271	12:5555120	A/G	NTF3	intron	1.000	1.06067	0.0218	0.006993		7
rs10849272	12:5559111	A/G	NTF3	intron	0.904	1.03490	0.0364	0.3464		6
rs10849273	12:5568171	T/C	NTF3	intron	1.010	0.99392	0.0130	0.6404		6
rs10849274	12:5574011	T/G	NTF3	intron	0.984	0.99591	0.0130	0.7548		7
rs10849275	12:5583939	A/G	NTF3	intron	0.983	0.98334	0.0126	0.1808		7
rs10849276	12:5594103	A/G	NTF3	intron	1.000	1.00944	0.0106	0.3718		5
rs10849277	12:5603935	T/C	NTF3	coding-synon	0.925	0.98857	0.0144	0.4233		7
rs10849280	12:5628804	A/G	NTF3	intron	0.981	1.01806	0.0107	0.09364		7
rs11063675	12:5546466	T/C	NTF3	intron	0.817	0.93193	0.0575	0.2205		5
rs11063677	12:5551632	A/G	NTF3	intron	0.878	1.00914	0.0131	0.4839		2b
rs11063678	12:5551642	T/C	NTF3	intron	0.867	0.97853	0.0197	0.2695		4
rs11063679	12:5552126	A/C	NTF3	intron	1.000	0.94158	0.0208	0.003856		7
rs11063683	12:5557207	T/G	NTF3	intron	0.991	1.01898	0.0145	0.1939		7
rs11063686	12:5564541	T/G	NTF3	intron	0.993	1.01532	0.0138	0.2703		4
rs11063688	12:5567145	T/C	NTF3	intron	0.976	1.00894	0.0106	0.4051		7
rs11063689	12:5567146	A/G	NTF3	intron	0.971	0.99362	0.0135	0.6382		7
rs11063690	12:5567925	T/C	NTF3	intron	0.981	0.95266	0.0269	0.07108		5
rs11063691	12:5571448	T/G	NTF3	intron	0.998	0.98216	0.0138	0.1905		5
rs11063692	12:5571845	A/C	NTF3	intron	1.010	0.99541	0.0130	0.7254		6
rs11063699	12:5587152	T/G	NTF3	intron	1.000	1.03015	0.0114	0.00939		7
rs11063700	12:5587753	T/C	NTF3	intron	0.989	0.96880	0.0115	0.005871		7
rs11063701	12:5587754	A/G	NTF3	intron	0.991	1.03345	0.0116	0.004494		7
rs11063702	12:5588018	A/G	NTF3	intron	0.998	0.97142	0.0115	0.01159		5
rs11063703	12:5589409	A/G	NTF3	intron	0.997	1.01147	0.0106	0.2814		5
rs11063707	12:5594325	A/C	NTF3	intron	1.000	0.99064	0.0106	0.373		6
rs11063708	12:5594403	T/C	NTF3	intron	1.000	0.99035	0.0106	0.3593		7
rs11063713	12:5603602	C/G	NTF3	coding-synon	0.641	1.00803	0.0509	0.8748		6
rs11063714	12:5604933	A/G	NTF3	near-gene-3	0.898	0.98955	0.0359	0.7698		6
rs11063726	12:5625393	T/G	NTF3	intron	0.946	0.99830	0.0124	0.8928		7
rs11063727	12:5630471	A/C	NTF3	intron	0.945	0.99183	0.0143	0.5652		7
rs111253433	12:5575639	A/G	NTF3	intron	0.796	0.99183	0.0385	0.8319		5
rs112055775	12:5599756	T/C	NTF3	intron	0.764	1.02143	0.0483	0.6616		5
rs112081968	12:5579370	A/G	NTF3	intron	0.913	0.97599	0.0401	0.5436		7
rs113503805	12:5547233	A/C	NTF3	intron	0.886	1.07037	0.0312	0.0294		7
rs116872676	12:5599397	A/G	NTF3	intron	0.865	1.06887	0.0406	0.1011		5
rs116896370	12:5556269	T/G	NTF3	intron	0.876	1.06120	0.0396	0.1334		7
rs117366671	12:5588227	T/G	NTF3	intron	0.917	0.90303	0.0467	0.02893		6
rs117397694	12:5565515	A/C	NTF3	intron	0.868	1.07530	0.0387	0.06083		5
rs117404024	12:5552112	A/G	NTF3	intron	0.930	1.03956	0.0351	0.2695		6
rs117625254	12:5623325	T/C	NTF3	intron	0.848	0.96647	0.0430	0.4287		5
rs117653207	12:5546853	T/G	NTF3	intron	0.945	0.99273	0.0247	0.768		5
rs117871492	12:5625791	A/G	NTF3	intron	0.754	1.03759	0.0256	0.1497		6
rs118020824	12:5600325	T/C	NTF3	intron	0.878	1.01207	0.0378	0.7514		7
rs118118472	12:5588541	A/G	NTF3	intron	0.851	0.95973	0.0521	0.43		5
rs11836221	12:5541891	A/G	NTF3	intron	0.847	0.99372	0.0116	0.5868		5
rs11836222	12:5541892	A/C	NTF3	intron	0.847	0.99372	0.0116	0.5868		5
rs12298442	12:5591819	A/G	NTF3	intron	0.991	1.00894	0.0106	0.4005		5
rs12306918	12:5593727	C/G	NTF3	intron	0.998	1.02984	0.0151	0.05091		5
rs12319650	12:5588971	A/C	NTF3	intron	0.973	0.97707	0.0155	0.1354		5
rs12369350	12:5577867	A/G	NTF3	intron	0.995	1.00030	0.0111	0.9757		7
rs12370969	12:5578655	A/G	NTF3	intron	0.990	0.99880	0.0111	0.9162		7
rs12424856	12:5573613	A/T	NTF3	intron	0.985	0.98906	0.0113	0.3298		5
rs12810047	12:5621572	T/G	NTF3	intron	0.942	1.00140	0.0127	0.9099		5
rs12817188	12:5567619	A/G	NTF3	intron	0.998	1.00451	0.0115	0.6947		5
rs138572952	12:5545191	T/G	NTF3	intron	0.722	0.98610	0.0650	0.8299		-
rs139462311	12:5570601	A/G	NTF3	intron	0.973	1.03821	0.0536	0.4841		-
rs140126697	12:5579567	A/G	NTF3	intron	0.845	1.00080	0.0565	0.9886		-
rs141206443	12:5600070	A/G	NTF3	intron	0.701	0.95418	0.0485	0.3335		-
rs141364689	12:5602097	T/C	NTF3	intron,near-gene-5	0.601	0.89039	0.0731	0.1121		-
rs141511953	12:5589824	A/G	NTF3	intron	0.937	0.96609	0.0432	0.4235		-
rs141515644	12:5628605	A/G	NTF3	intron	0.822	0.98817	0.0409	0.7707		-
rs142757237	12:5569219	A/C	NTF3	intron	0.880	0.94120	0.0454	0.182		-
rs145774831	12:5564031	A/G	NTF3	intron	0.967	0.96773	0.0539	0.5429		-
rs148590960	12:5541171	A/G	NTF3	near-gene-5	0.813	0.99283	0.0264	0.7857		-
rs150701373	12:5552639	A/G	NTF3	intron	0.701	0.96291	0.0539	0.4834		-
rs16933489	12:5572210	T/C	NTF3	intron	0.879	0.97765	0.0269	0.3999		7
rs17180851	12:5554548	A/T	NTF3	intron	0.989	0.98265	0.0145	0.2287		7
rs17180913	12:5560158	T/C	NTF3	intron	0.977	1.01745	0.0145	0.232		7
rs17722632	12:5571981	T/C	NTF3	intron	0.998	1.00572	0.0115	0.6198		7
rs17784533	12:5550738	A/G	NTF3	intron	0.992	1.03572	0.0178	0.04924		4
rs17784611	12:5575027	T/C	NTF3	intron	0.958	0.96522	0.0114	0.001868		7
rs17784635	12:5577559	A/G	NTF3	intron	0.981	1.02306	0.0127	0.07246		7
rs1800599	12:5540045	A/C	NTF3	near-gene-5	0.828	0.96060	0.0207	0.05263		2b
rs1805149	12:5603607	A/G	NTF3	missense	0.648	1.00702	0.0519	0.8926		6
rs180702742	12:5541132	C/G	NTF3	near-gene-5	0.752	1.04394	0.0302	0.1547		-
rs181294142	12:5575333	T/C	NTF3	intron	0.829	1.15454	0.0640	0.02474		-
rs186015758	12:5578071	A/T	NTF3	intron	0.978	0.97785	0.0548	0.6827		-
rs189173493	12:5540835	A/C	NTF3	near-gene-5	0.705	0.92265	0.0501	0.1077		-
rs191081131	12:5561399	T/C	NTF3	intron	0.795	0.97045	0.0510	0.557		-
rs192638639	12:5576551	A/G	NTF3	intron	0.815	1.07466	0.0569	0.2057		-
rs2052355	12:5576943	A/G	NTF3	intron	0.989	1.00331	0.0164	0.8419		7
rs34136247	12:5576366	A/G	NTF3	intron	0.801	0.96609	0.0349	0.323		7
rs34352221	12:5576371	T/G	NTF3	intron	0.767	0.93585	0.0397	0.09482		7
rs34368187	12:5594593	T/C	NTF3	intron	1.000	1.00955	0.0106	0.3706		5
rs34485756	12:5594627	T/C	NTF3	intron	1.000	0.99084	0.0106	0.3867		5
rs34792376	12:5576369	T/C	NTF3	intron	0.767	0.93576	0.0397	0.09407		7
rs34916342	12:5587483	T/G	NTF3	intron	0.995	1.03262	0.0115	0.005325		5
rs35007573	12:5594598	T/C	NTF3	intron	1.000	0.99104	0.0106	0.3947		5
rs35691544	12:5594993	T/C	NTF3	intron	1.000	0.99054	0.0106	0.3717		5
rs35852166	12:5557527	A/G	NTF3	intron	0.984	1.03873	0.0269	0.1573		6
rs35934802	12:5594722	A/G	NTF3	intron	1.000	0.99054	0.0106	0.3714		5
rs3890792	12:5596415	A/G	NTF3	intron	0.998	1.02994	0.0151	0.05054		7
rs3924027	12:5595435	A/G	NTF3	intron	1.000	1.00934	0.0106	0.3772		5
rs4073042	12:5628932	A/C	NTF3	intron	0.990	0.98147	0.0106	0.07853		5
rs4074967	12:5600466	T/G	NTF3	intron	0.992	0.97853	0.0152	0.1529		7
rs4077470	12:5596812	T/C	NTF3	intron	1.000	1.00894	0.0106	0.3983		7
rs4077471	12:5596993	T/C	NTF3	intron	0.995	1.00944	0.0106	0.3766		7
rs4765815	12:5564909	A/G	NTF3	intron	0.998	1.00371	0.0175	0.8314		5
rs4930767	12:5597381	T/C	NTF3	intron	0.994	1.00351	0.0106	0.7384		5
rs4930806	12:5630381	A/G	NTF3	intron	0.977	1.01298	0.0172	0.4522		6
rs4930817	12:5597017	A/G	NTF3	intron	0.999	1.00995	0.0106	0.3479		7
rs4930818	12:5597091	T/G	NTF3	intron	0.999	0.99005	0.0106	0.343		7
rs4930820	12:5597205	A/T	NTF3	intron	0.999	0.98975	0.0106	0.331		5
rs59918277	12:5588592	T/G	NTF3	intron	1.000	1.03025	0.0114	0.009242		5
rs61394719	12:5561649	T/G	NTF3	intron	0.965	0.99740	0.0142	0.8545		7
rs61534067	12:5544998	A/G	NTF3	intron	0.950	0.96618	0.0170	0.04254		7
rs61907674	12:5560017	T/C	NTF3	intron	0.960	0.99322	0.0113	0.552		6
rs61907699	12:5569573	T/C	NTF3	intron	0.996	1.01654	0.0138	0.2346		5
rs61907700	12:5574297	A/G	NTF3	intron	0.847	1.01755	0.0448	0.6975		5
rs61907701	12:5576225	A/G	NTF3	intron	0.911	1.01126	0.0133	0.3992		7
rs61907702	12:5583021	T/C	NTF3	intron	0.933	0.97707	0.0205	0.2569		7
rs61907703	12:5583022	A/G	NTF3	intron	0.960	0.99263	0.0131	0.5728		7
rs6489624	12:5579631	A/G	NTF3	intron	0.978	1.01521	0.0125	0.2298		5
rs6489625	12:5585151	A/G	NTF3	intron	0.982	1.01674	0.0126	0.1876		6
rs6489626	12:5588951	T/C	NTF3	intron	0.980	0.97638	0.0110	0.03014		5
rs6489627	12:5588999	T/C	NTF3	intron	0.979	1.01582	0.0126	0.2116		5
rs6489628	12:5596346	T/C	NTF3	intron	1.000	1.00955	0.0106	0.3701		7
rs6489629	12:5601929	A/G	NTF3	intron,near-gene-5	0.948	1.02450	0.0186	0.1941		4
rs6489630	12:5604624	T/C	NTF3	near-gene-3	0.967	1.00250	0.0135	0.8527		5
rs6489631	12:5622140	T/C	NTF3	intron	0.865	0.98521	0.0300	0.6181		7
rs66497710	12:5550338	T/C	NTF3	intron	0.988	0.96445	0.0179	0.0432		4
rs66856138	12:5549572	C/G	NTF3	intron	0.981	0.96387	0.0179	0.04028		7
rs67394720	12:5547759	T/G	NTF3	intron	0.960	1.04029	0.0179	0.02745		6
rs67523679	12:5549203	A/G	NTF3	intron	0.978	0.96358	0.0180	0.03911		5
rs68005060	12:5549863	A/G	NTF3	intron	0.984	0.96406	0.0179	0.04121		5
rs7134801	12:5588672	A/G	NTF3	intron	0.972	0.98138	0.0139	0.1747		7
rs71459947	12:5540540	C/G	NTF3	near-gene-5	0.839	1.00080	0.0236	0.9735		5
rs71459949	12:5573773	C/G	NTF3	intron	0.934	0.97054	0.0156	0.05505		6
rs71532850	12:5602650	A/G	NTF3	intron,near-gene-5	0.816	0.93829	0.0487	0.1908		7
rs72653452	12:5600735	T/C	NTF3	intron	0.703	0.98699	0.0365	0.7207		5
rs7300613	12:5596141	A/G	NTF3	intron	1.000	0.99054	0.0106	0.3701		5
rs73032360	12:5562104	A/C	NTF3	intron	0.899	0.97249	0.0265	0.2929		5
rs73034404	12:5582560	A/G	NTF3	intron	1.000	1.02552	0.0129	0.05034		6
rs73034407	12:5587317	A/T	NTF3	intron	0.997	0.96967	0.0152	0.0425		6
rs73039962	12:5544625	A/G	NTF3	intron	0.952	1.04050	0.0181	0.02828		5
rs73039966	12:5545532	A/G	NTF3	intron	0.955	0.96137	0.0181	0.02929		5
rs73039971	12:5547096	T/C	NTF3	intron	0.965	0.96214	0.0181	0.03288		5
rs73039974	12:5547187	A/C	NTF3	intron	0.963	0.96175	0.0180	0.0302		5
rs73039979	12:5548661	T/G	NTF3	intron	0.891	0.98570	0.0153	0.3442		2b
rs73039984	12:5549456	T/C	NTF3	intron	0.977	1.03780	0.0179	0.03779		6
rs7314794	12:5569271	T/C	NTF3	intron	0.993	1.00300	0.0108	0.7831		6
rs73259353	12:5588129	T/C	NTF3	intron	0.946	1.05813	0.0263	0.0314		7
rs74056337	12:5544331	T/C	NTF3	intron	0.951	0.96069	0.0181	0.0268		5
rs74056365	12:5578484	T/C	NTF3	intron	0.976	0.97151	0.0542	0.594		6
rs74056366	12:5578839	A/G	NTF3	intron	0.976	0.97151	0.0542	0.5939		6
rs74742793	12:5562344	A/G	NTF3	intron	0.977	0.98837	0.0152	0.4431		6
rs74768663	12:5622824	T/C	NTF3	intron	0.952	0.97239	0.0210	0.1822		6
rs7484401	12:5599902	C/G	NTF3	intron	0.989	0.98699	0.0107	0.2198		7
rs75791002	12:5548441	T/C	NTF3	intron	0.775	1.00501	0.0350	0.8871		4
rs75914879	12:5562283	T/C	NTF3	intron	0.968	1.00642	0.0186	0.7303		7
rs75928511	12:5594988	A/C	NTF3	intron	0.802	1.00170	0.0387	0.9658		5
rs75930438	12:5583574	A/G	NTF3	intron	0.817	0.95018	0.0340	0.1326		7
rs76168778	12:5549716	A/G	NTF3	intron	0.850	0.96657	0.0343	0.3209		5
rs76466686	12:5594263	T/G	NTF3	intron	0.630	1.12491	0.0568	0.03815		6
rs76727319	12:5553031	A/G	NTF3	intron	0.795	0.98226	0.0290	0.5377		6
rs76921257	12:5577950	C/G	NTF3	intron	0.938	1.04728	0.0433	0.2866		7
rs76982730	12:5548171	A/T	NTF3	intron	0.943	1.00692	0.0246	0.7785		5
rs77208778	12:5573935	T/C	NTF3	intron	0.904	1.00632	0.0541	0.9075		7
rs77424168	12:5562122	A/G	NTF3	intron	0.968	0.98916	0.0191	0.5682		5
rs78095042	12:5598795	A/C	NTF3	intron	0.872	1.02655	0.0296	0.3761		7
rs79012064	12:5628657	A/G	NTF3	intron	0.874	1.01694	0.0290	0.5617		5
rs79013129	12:5589272	C/G	NTF3	intron	0.960	0.98797	0.0185	0.5148		5
rs79211558	12:5596571	T/G	NTF3	intron	0.738	0.95218	0.0560	0.3817		7
rs79296729	12:5629790	A/T	NTF3	intron	0.981	1.02000	0.0204	0.3318		7
rs79730964	12:5596781	T/C	NTF3	intron	0.904	1.10827	0.0471	0.02904		7
rs79832993	12:5560021	A/G	NTF3	intron	0.900	0.99213	0.0114	0.4913		6
rs80070361	12:5589893	C/G	NTF3	intron	0.958	0.98827	0.0186	0.5244		5
rs80224541	12:5560979	T/C	NTF3	intron	0.845	0.95657	0.0327	0.1736		7
rs918177	12:5553061	A/G	NTF3	intron	0.956	0.96590	0.0111	0.001797		7
rs9888338	12:5548301	T/C	NTF3	intron	0.955	0.97521	0.0133	0.05942		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information