NQO2

Basic Information

Gene Symbol	NQO2
Entrez Id	4835
Position	chr6:3000067..3019994
Description	NAD(P)H dehydrogenase, quinone 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10223331	6:3018459	A/G	NQO2	intron	0.984	1.00391	0.0118	0.7408		7
rs10223369	6:3018174	T/C	NQO2	intron	0.987	1.00170	0.0115	0.8848		6
rs10223372	6:3018397	T/G	NQO2	intron	0.994	0.99790	0.0220	0.9258		7
rs10223660	6:3021866	T/C	NQO2	ncRNA	0.697	0.97035	0.0135	0.02564		6
rs10223810	6:3021794	A/G	NQO2	ncRNA	0.834	1.01735	0.0117	0.1402		7
rs1077782	6:3027173	T/C	NQO2	intron	0.742	1.03469	0.0466	0.4645		2a
rs111569549	6:3021905	T/C	NQO2	ncRNA	0.607	1.03107	0.0270	0.2573		6
rs113711352	6:3027794	T/C	NQO2	near-gene-3	0.971	0.97648	0.0216	0.2693		7
rs114004101	6:3013108	A/C	NQO2	intron	0.878	1.00501	0.0220	0.8212		3a
rs114068063	6:3000433	T/C	NQO2	intron	0.904	0.98629	0.0320	0.667		4
rs1143684	6:3010390	T/C	NQO2	missense	0.974	1.00260	0.0131	0.845		1a
rs114493971	6:3027693	T/C	NQO2	near-gene-3	0.946	0.96696	0.0382	0.3801		5
rs114973801	6:3013112	T/C	NQO2	intron	0.988	1.02511	0.0307	0.4194		4
rs117272195	6:3012428	A/G	NQO2	intron	0.967	1.02768	0.0528	0.6055		5
rs11752424	6:3022764	A/G	NQO2	ncRNA	0.933	0.95772	0.0190	0.02302		4
rs11966750	6:3021516	C/G	NQO2	ncRNA	0.928	1.02316	0.0315	0.4671		7
rs12192697	6:3024392	T/C	NQO2	near-gene-5,ncRNA	0.975	0.99362	0.0108	0.5571		4
rs12200513	6:3001258	A/G	NQO2	intron	0.942	1.00763	0.0111	0.4969		6
rs12524129	6:3018811	A/T	NQO2	intron	0.996	0.96957	0.0130	0.01714		7
rs12524138	6:3019115	A/G	NQO2	intron	0.994	1.03200	0.0130	0.0154		6
rs12524504	6:3019092	T/C	NQO2	intron	0.996	1.03149	0.0130	0.01708		7
rs12524608	6:3022251	A/G	NQO2	ncRNA	0.810	1.02942	0.0331	0.3798		7
rs12524783	6:3017495	A/G	NQO2	intron	0.996	0.96889	0.0130	0.01504		7
rs13198902	6:3022094	A/G	NQO2	ncRNA	0.799	1.00844	0.0119	0.4826		7
rs13215255	6:3021698	T/C	NQO2	ncRNA	0.914	0.98128	0.0110	0.08674		6
rs138616686	6:3003970	A/G	NQO2	intron,near-gene-5,untranslated-5	0.884	1.02071	0.0119	0.08661		-
rs139093164	6:3004570	T/C	NQO2	intron	0.926	1.04917	0.0542	0.3756		-
rs139759823	6:3009045	A/G	NQO2	intron	0.821	1.03821	0.0413	0.3642		-
rs141406059	6:3020383	T/C	NQO2	near-gene-3	0.866	1.00040	0.0430	0.9929		-
rs141738801	6:3014831	A/T	NQO2	intron	0.980	1.04655	0.0502	0.3656		-
rs141760869	6:3003915	T/C	NQO2	intron,near-gene-5,untranslated-5	0.778	0.99134	0.0129	0.5007		-
rs142185216	6:3008963	T/C	NQO2	intron	0.971	0.97804	0.0307	0.4691		-
rs143031639	6:3009050	A/G	NQO2	intron	0.755	0.98955	0.0314	0.739		-
rs143236381	6:2999964	T/C	NQO2	near-gene-5	0.831	1.00200	0.0325	0.9509		-
rs144275352	6:3001594	C/G	NQO2	intron	0.939	1.05127	0.0405	0.2177		-
rs144416693	6:3022342	T/C	NQO2	ncRNA	0.887	1.03210	0.0424	0.4561		-
rs144761766	6:3026709	T/G	NQO2	near-gene-5,ncRNA	0.957	1.03376	0.0384	0.3872		-
rs145169498	6:3024368	A/G	NQO2	near-gene-5,ncRNA	0.952	1.03407	0.0385	0.3836		-
rs145279200	6:3009718	T/C	NQO2	intron	0.871	1.04760	0.0287	0.1044		-
rs145722753	6:3027937	A/T	NQO2	near-gene-3	0.934	0.98364	0.0208	0.4277		-
rs145948090	6:3008828	A/G	NQO2	intron	0.983	1.02409	0.0308	0.4403		-
rs146349895	6:3008989	T/C	NQO2	intron	0.961	1.03345	0.0318	0.3016		-
rs146829847	6:3027695	A/G	NQO2	near-gene-3	0.696	0.94961	0.0461	0.2616		-
rs147280484	6:3014787	T/G	NQO2	intron	0.980	1.04655	0.0502	0.3652		-
rs148062145	6:3003914	T/C	NQO2	intron,near-gene-5,untranslated-5	0.813	0.99601	0.0129	0.7538		-
rs17136117	6:3010337	A/G	NQO2	missense	0.976	0.95428	0.0504	0.3525		4
rs17300141	6:3012778	A/G	NQO2	missense	0.900	1.05253	0.0344	0.1372		7
rs188626257	6:3000034	A/T	NQO2	near-gene-5	0.849	0.99880	0.0221	0.957		-
rs190045696	6:3000789	T/C	NQO2	intron	0.737	0.99084	0.0335	0.7833		-
rs190908853	6:3022242	A/G	NQO2	ncRNA	0.787	1.01461	0.0368	0.6932		-
rs191186316	6:3028047	C/G	NQO2	near-gene-3	0.720	1.02706	0.0544	0.6237		-
rs1963159	6:3022171	A/G	NQO2	ncRNA	0.810	0.99950	0.0136	0.9692		7
rs1963161	6:3022304	T/C	NQO2	ncRNA	0.841	0.99015	0.0128	0.4423		6
rs2038560	6:3015476	A/G	NQO2	intron	0.883	1.03479	0.0359	0.341		5
rs2038561	6:3015477	T/C	NQO2	intron	0.883	0.96638	0.0359	0.3409		5
rs2038562	6:3016057	A/G	NQO2	intron	0.990	1.02276	0.0306	0.462		6
rs2070998	6:2999701	C/G	NQO2	near-gene-5	0.967	1.01694	0.0117	0.1509		4
rs2070999	6:2999729	A/G	NQO2	near-gene-5	0.960	1.01187	0.0110	0.284		4
rs2071000	6:2999842	C/G	NQO2	near-gene-5	0.922	0.99750	0.0235	0.9163		4
rs2071001	6:3000112	A/G	NQO2	near-gene-5,untranslated-5	0.941	1.00541	0.0127	0.6684		4
rs2071002	6:3000303	A/C	NQO2	untranslated-5	0.972	1.00985	0.0116	0.3984		4
rs2071003	6:3000332	T/C	NQO2	intron	0.950	0.99581	0.0127	0.7414		4
rs2071004	6:3000337	A/G	NQO2	intron	0.950	0.99571	0.0127	0.7342		4
rs2145847	6:3008627	T/C	NQO2	intron	0.965	0.99720	0.0199	0.8893		6
rs2180984	6:3008395	T/C	NQO2	intron	0.964	1.00080	0.0200	0.9671		6
rs2326108	6:3011542	T/C	NQO2	intron	0.995	0.96948	0.0130	0.01691		7
rs2326111	6:3027532	A/G	NQO2	ncRNA	0.977	1.01248	0.0137	0.3689		2b
rs2475208	6:3010459	T/C	NQO2	intron	0.992	1.01735	0.0105	0.1039		2b
rs2518581	6:3009944	A/G	NQO2	intron	0.977	1.00692	0.0121	0.5694		1f
rs2756078	6:3010103	A/G	NQO2	intron	0.953	1.00230	0.0130	0.8591		5
rs28383592	6:3000078	T/C	NQO2	near-gene-5,untranslated-5	0.822	1.02173	0.0233	0.3565		2b
rs28383595	6:3001468	T/C	NQO2	intron	0.902	0.99601	0.0233	0.8639		6
rs28383596	6:3001540	A/G	NQO2	intron	0.827	1.01745	0.0454	0.7037		7
rs28383602	6:3003190	A/G	NQO2	intron,near-gene-5	0.902	0.99681	0.0233	0.89		7
rs28383615	6:3006815	A/G	NQO2	intron	0.953	1.05295	0.0510	0.312		7
rs28383616	6:3006859	A/G	NQO2	intron	0.942	0.97365	0.0224	0.2337		7
rs28383618	6:3009967	A/G	NQO2	intron	0.987	0.97570	0.0308	0.4247		5
rs28383620	6:3010073	A/C	NQO2	intron	0.971	1.04634	0.0500	0.3641		5
rs28383621	6:3010114	A/G	NQO2	intron	0.987	1.02491	0.0308	0.423		5
rs28383622	6:3010182	A/G	NQO2	intron	0.975	0.95447	0.0504	0.3553		5
rs28383623	6:3010298	A/G	NQO2	missense	0.988	1.02562	0.0308	0.4109		3a
rs28383624	6:3010465	A/T	NQO2	intron	0.976	1.04707	0.0504	0.3606		3a
rs28383629	6:3013301	T/C	NQO2	intron	0.910	1.03583	0.0227	0.1202		7
rs28383632	6:3013411	A/G	NQO2	intron	0.718	1.04352	0.0416	0.3052		7
rs28383634	6:3013566	A/G	NQO2	intron	0.997	1.00793	0.0203	0.6955		7
rs28383641	6:3018384	A/G	NQO2	intron	0.981	0.98118	0.0308	0.5373		6
rs28383642	6:3018443	A/G	NQO2	intron	0.758	1.04561	0.0352	0.2044		7
rs28383643	6:3018455	T/C	NQO2	intron	0.788	0.97482	0.0459	0.5785		6
rs28383644	6:3018462	T/C	NQO2	intron	0.783	1.02409	0.0466	0.6097		7
rs28383646	6:3018478	T/C	NQO2	intron	0.863	0.97443	0.0369	0.4823		7
rs28383647	6:3018488	T/C	NQO2	intron	0.863	1.02737	0.0369	0.4645		7
rs28383648	6:3018519	T/C	NQO2	intron	0.976	0.98196	0.0308	0.5542		6
rs28383649	6:3019144	A/G	NQO2	intron	0.975	1.01826	0.0308	0.5557		6
rs35794474	6:3024586	A/C	NQO2	near-gene-5,ncRNA	0.926	1.00100	0.0136	0.9435		4
rs3778259	6:3016386	T/C	NQO2	intron	0.987	1.00481	0.0118	0.6837		6
rs3778260	6:3016494	A/G	NQO2	intron	0.987	1.00471	0.0118	0.694		6
rs3799204	6:3013616	A/G	NQO2	intron	0.995	0.99074	0.0203	0.6476		6
rs3799205	6:3013896	A/C	NQO2	intron	0.992	1.00190	0.0173	0.9146		4
rs3823093	6:3013594	A/C	NQO2	intron	0.969	0.99094	0.0210	0.6662		6
rs3823094	6:3013604	T/G	NQO2	intron	0.947	0.99332	0.0218	0.758		6
rs3823095	6:3013605	T/C	NQO2	intron	0.947	0.99332	0.0218	0.7588		6
rs3823096	6:3014483	T/C	NQO2	intron	1.000	1.01765	0.0107	0.1019		4
rs3923259	6:3010482	A/G	NQO2	intron	0.988	1.02511	0.0307	0.4201		3a
rs4079826	6:3027768	T/C	NQO2	near-gene-3	0.989	0.98857	0.0143	0.4232		6
rs4149352	6:3002238	T/C	NQO2	intron	0.962	0.99402	0.0127	0.6356		1a
rs4149353	6:3002323	C/G	NQO2	intron,untranslated-5	0.910	0.98285	0.0204	0.3962		4
rs4149354	6:3003775	A/C	NQO2	intron,near-gene-5	0.886	0.99601	0.0118	0.7341		5
rs4149359	6:3006355	T/C	NQO2	intron	0.988	1.00180	0.0222	0.9352		7
rs4149360	6:3006807	A/G	NQO2	intron	0.994	1.03241	0.0130	0.01383		6
rs4149361	6:3006985	T/C	NQO2	intron	0.985	0.99780	0.0110	0.8417		6
rs4149362	6:3007428	A/C	NQO2	intron	0.976	0.98511	0.0109	0.1661		7
rs4149363	6:3007478	A/G	NQO2	intron	0.992	0.96889	0.0130	0.015		6
rs4149365	6:3014738	T/C	NQO2	intron	0.997	1.00381	0.0221	0.8622		6
rs4149366	6:3015489	T/C	NQO2	intron	0.992	1.00713	0.0204	0.7282		5
rs4149367	6:3015865	T/C	NQO2	coding-synon,intron	0.998	1.00844	0.0202	0.6794		6
rs4149368	6:3015898	A/T	NQO2	intron	0.997	0.99114	0.0202	0.6601		6
rs4149369	6:3016130	T/C	NQO2	intron	0.987	1.00511	0.0118	0.6691		7
rs4149370	6:3019654	T/C	NQO2	intron	0.984	1.00501	0.0119	0.6742		1f
rs4269412	6:3024886	T/C	NQO2	near-gene-5,ncRNA	0.977	1.00682	0.0108	0.5263		6
rs4275101	6:3011459	T/G	NQO2	intron	0.988	0.97541	0.0307	0.4179		7
rs4310093	6:3028122	A/G	NQO2	near-gene-3	0.780	0.99203	0.0122	0.51		6
rs4457204	6:3028039	C/G	NQO2	near-gene-3	0.962	1.00280	0.0121	0.8179		7
rs45445297	6:3019634	T/C	NQO2	intron	0.974	0.98196	0.0308	0.5541		5
rs45540731	6:3003630	C/G	NQO2	intron,near-gene-5	0.715	0.99571	0.0238	0.8579		5
rs4959221	6:3028028	A/G	NQO2	near-gene-3	0.925	1.00321	0.0120	0.7891		7
rs4959753	6:3021235	A/G	NQO2	ncRNA	0.971	0.97093	0.0132	0.02506		7
rs4959754	6:3022167	T/C	NQO2	ncRNA	0.870	1.02337	0.0124	0.06133		7
rs4959756	6:3022511	T/C	NQO2	ncRNA	0.915	0.99243	0.0115	0.5071		5
rs57826671	6:3025499	T/C	NQO2	near-gene-5	0.978	1.00702	0.0108	0.5194		6
rs58022726	6:3016728	A/G	NQO2	intron	0.989	0.97687	0.0306	0.4446		5
rs58218000	6:3017974	A/G	NQO2	intron	0.984	1.02051	0.0308	0.5099		5
rs58943922	6:3009752	T/C	NQO2	intron	0.967	1.04917	0.0498	0.3356		6
rs59071166	6:3017903	T/C	NQO2	intron	0.984	0.97990	0.0308	0.51		5
rs59328709	6:3008680	A/G	NQO2	intron	0.982	0.97668	0.0308	0.4445		6
rs59443253	6:3018144	T/G	NQO2	intron	0.982	1.01857	0.0308	0.5499		7
rs59805685	6:3008150	T/C	NQO2	intron	0.981	0.97697	0.0309	0.4499		7
rs60086262	6:3017831	T/G	NQO2	intron	0.984	0.97990	0.0308	0.5103		5
rs60859009	6:3018112	T/C	NQO2	intron	0.982	1.01857	0.0308	0.5497		7
rs60902033	6:3009235	T/C	NQO2	intron	0.866	1.01238	0.0390	0.7523		6
rs62391551	6:3000857	C/G	NQO2	intron	0.712	1.02224	0.0433	0.6117		7
rs62392497	6:3017861	A/C	NQO2	intron	0.996	1.03118	0.0130	0.01792		5
rs62392499	6:3021813	C/G	NQO2	ncRNA	0.755	1.02634	0.0152	0.08812		6
rs62392500	6:3023339	T/C	NQO2	ncRNA	0.918	1.00130	0.0114	0.9096		4
rs62392501	6:3024583	T/G	NQO2	near-gene-5,ncRNA	0.842	0.99641	0.0135	0.7874		4
rs62392502	6:3024584	A/G	NQO2	near-gene-5,ncRNA	0.879	1.00481	0.0135	0.7241		4
rs62392504	6:3024853	T/C	NQO2	near-gene-5,ncRNA	0.981	0.98906	0.0141	0.4342		6
rs62392505	6:3024918	A/G	NQO2	near-gene-5,ncRNA	0.988	0.99005	0.0144	0.4883		7
rs6596929	6:3005559	A/G	NQO2	intron	0.976	0.99810	0.0111	0.8629		5
rs6903839	6:3020444	T/C	NQO2	near-gene-3,ncRNA	0.989	1.02860	0.0130	0.0301		5
rs6905363	6:3021492	A/G	NQO2	ncRNA	0.951	0.98531	0.0108	0.1685		6
rs6906799	6:3025723	A/G	NQO2	near-gene-5	0.989	0.98906	0.0143	0.4422		7
rs6907734	6:3025533	T/C	NQO2	near-gene-5	0.959	1.00713	0.0134	0.5948		7
rs6908124	6:3025758	T/C	NQO2	near-gene-5	0.963	1.01086	0.0139	0.435		6
rs6914191	6:3026808	T/C	NQO2	near-gene-5,ncRNA	0.979	0.99960	0.0120	0.9715		5
rs6919219	6:3020765	A/G	NQO2	ncRNA	0.992	1.01552	0.0105	0.1453		7
rs6919232	6:3020792	A/G	NQO2	ncRNA	0.991	1.01796	0.0106	0.09096		7
rs6919992	6:3020430	C/G	NQO2	near-gene-3,ncRNA	0.995	0.98275	0.0105	0.09923		5
rs6920375	6:3020689	T/C	NQO2	ncRNA	0.992	1.01491	0.0105	0.1606		6
rs6920900	6:3020989	C/G	NQO2	ncRNA	0.985	0.98462	0.0106	0.1426		6
rs6924045	6:3021030	T/G	NQO2	ncRNA	0.959	1.00331	0.0132	0.8044		6
rs6925694	6:3021278	C/G	NQO2	ncRNA	0.971	0.98403	0.0107	0.1319		7
rs6929830	6:3025581	A/T	NQO2	near-gene-5	0.959	0.99283	0.0134	0.5885		6
rs6931684	6:3022144	T/C	NQO2	ncRNA	0.931	1.02316	0.0199	0.2506		6
rs6942303	6:3020415	A/G	NQO2	near-gene-3,ncRNA	0.995	0.98275	0.0105	0.09885		5
rs72656961	6:3028125	C/G	NQO2	near-gene-3	0.759	0.98837	0.0122	0.3383		6
rs72842077	6:3027682	T/C	NQO2	near-gene-3	0.606	1.00955	0.0225	0.6741		5
rs73349551	6:3011771	T/G	NQO2	intron	0.976	1.04383	0.0499	0.3893		6
rs73351418	6:3027420	T/G	NQO2	ncRNA	0.958	0.96986	0.0384	0.4249		4
rs73718695	6:3007691	T/C	NQO2	intron	0.979	0.97726	0.0309	0.4566		6
rs73718696	6:3007697	C/G	NQO2	intron	0.979	1.02327	0.0309	0.4562		6
rs73718697	6:3007844	C/G	NQO2	intron	0.980	1.02337	0.0309	0.4538		7
rs73718700	6:3010910	A/G	NQO2	intron	0.988	1.02521	0.0307	0.4186		7
rs73718701	6:3011004	A/T	NQO2	intron	0.988	0.97541	0.0307	0.4179		7
rs73718911	6:3011063	A/G	NQO2	intron	0.988	1.02521	0.0307	0.4178		6
rs73718913	6:3011134	A/G	NQO2	intron	0.988	0.97541	0.0307	0.418		7
rs73718923	6:3018937	T/C	NQO2	intron	0.961	0.97961	0.0306	0.5012		5
rs73718924	6:3019293	A/G	NQO2	intron	0.974	0.98010	0.0309	0.5143		7
rs77777831	6:3028129	C/G	NQO2	near-gene-3	0.757	1.00351	0.0122	0.7734		6
rs78820491	6:3018734	A/C	NQO2	intron	0.976	1.01837	0.0308	0.5544		7
rs911536	6:3027131	A/G	NQO2	intron	0.998	0.98817	0.0144	0.4067		4
rs911537	6:3027658	T/C	NQO2	ncRNA	0.978	0.98768	0.0138	0.3697		5
rs911538	6:3027674	A/T	NQO2	near-gene-3	0.978	0.98768	0.0138	0.3692		5
rs927342	6:3026296	A/T	NQO2	near-gene-5,ncRNA	0.964	1.00672	0.0133	0.6147		2b
rs9328136	6:3016732	A/G	NQO2	intron	1.000	1.01847	0.0107	0.08646		5
rs9378352	6:3011149	T/C	NQO2	intron	0.991	0.99661	0.0109	0.7521		6
rs9378353	6:3011175	A/G	NQO2	intron	0.987	0.99481	0.0118	0.6581		6
rs9378754	6:3000832	A/G	NQO2	intron	0.931	0.98738	0.0137	0.3568		6
rs9378755	6:3000978	A/G	NQO2	intron	0.949	0.98995	0.0130	0.4374		7
rs9378756	6:3013314	T/C	NQO2	intron	0.959	0.99551	0.0110	0.6841		6
rs9378759	6:3013488	T/C	NQO2	intron	0.995	0.96957	0.0130	0.01711		6
rs9392448	6:2999554	A/G	NQO2	near-gene-5	0.961	0.98059	0.0126	0.12		4
rs9392449	6:3001431	T/C	NQO2	intron	0.937	0.98226	0.0132	0.1729		6
rs9405604	6:2999371	A/G	NQO2	near-gene-5	0.959	1.01217	0.0110	0.2704		4
rs9501908	6:3017929	A/G	NQO2	intron	1.000	0.98098	0.0105	0.06801		5
rs9501909	6:3018704	A/G	NQO2	intron	0.998	0.98108	0.0105	0.06888		7
rs9501910	6:3018774	C/G	NQO2	intron	0.972	1.00290	0.0131	0.8237		6
rs9501911	6:3018982	T/G	NQO2	intron	0.999	0.98118	0.0105	0.06994		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information