NOTCH2

Basic Information

Gene Symbol	NOTCH2
Entrez Id	4853
Position	chr1:120454176..120612317
Description	notch 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10127888	1:120498250	C/G	NOTCH2	intron	0.998	1.01258	0.0176	0.4794		7
rs10494233	1:120460916	A/C	NOTCH2	intron	0.948	1.00361	0.0379	0.9248		6
rs10494234	1:120513447	A/G	NOTCH2	intron	0.975	1.00110	0.0358	0.9764		5
rs10494235	1:120520715	A/T	NOTCH2	intron	0.988	0.98837	0.0160	0.4669		5
rs10923926	1:120489057	A/T	NOTCH2	intron	0.986	0.98511	0.0159	0.3477		6
rs10923929	1:120505996	C/G	NOTCH2	intron	0.986	1.01298	0.0159	0.4171		5
rs10923931	1:120517959	T/G	NOTCH2	intron	0.996	0.98906	0.0177	0.534		7
rs112305138	1:120494103	T/G	NOTCH2	intron	0.949	1.00391	0.0378	0.9172		6
rs112391001	1:120473682	T/C	NOTCH2	intron	0.876	0.99950	0.0403	0.9906		7
rs113304891	1:120515447	A/T	NOTCH2	intron	0.876	1.06449	0.0603	0.3		6
rs113611179	1:120499745	A/G	NOTCH2	intron	0.879	0.93548	0.0603	0.2686		7
rs113896243	1:120470312	T/C	NOTCH2	intron	0.949	0.99581	0.0378	0.9121		7
rs114421644	1:120509665	T/C	NOTCH2	intron	0.649	1.04175	0.0548	0.455		7
rs115335166	1:120494622	A/G	NOTCH2	intron	0.603	1.05643	0.0389	0.158		6
rs116062645	1:120525480	T/G	NOTCH2	intron	0.692	0.94838	0.0523	0.3114		5
rs12117337	1:120463398	T/C	NOTCH2	intron	0.671	0.95523	0.0443	0.3005		5
rs12132511	1:120530100	A/T	NOTCH2	intron	0.694	1.02870	0.0474	0.5506		5
rs140570745	1:120524704	T/C	NOTCH2	intron	0.747	0.95533	0.0430	0.2873		-
rs140795240	1:120459638	T/C	NOTCH2	intron	0.731	1.00783	0.0625	0.9009		-
rs141884455	1:120544331	A/G	NOTCH2	intron	0.716	1.00672	0.0209	0.75		-
rs146381510	1:120473988	A/G	NOTCH2	intron	0.616	1.01572	0.0553	0.7776		-
rs149771244	1:120519649	A/G	NOTCH2	intron	0.809	0.87678	0.0586	0.02484		-
rs17024508	1:120461629	A/G	NOTCH2	intron	0.972	1.00451	0.0364	0.9011		6
rs17024519	1:120465584	A/T	NOTCH2	intron	0.974	1.00481	0.0359	0.8944		6
rs17024521	1:120466754	C/G	NOTCH2	intron	0.972	1.00200	0.0362	0.9568		6
rs17024536	1:120478352	T/G	NOTCH2	intron	0.974	0.99651	0.0363	0.924		6
rs17024546	1:120481896	T/C	NOTCH2	intron	0.759	0.97531	0.0484	0.605		5
rs17024559	1:120491301	C/G	NOTCH2	intron	0.974	0.99302	0.0359	0.8461		4
rs17024564	1:120501712	A/G	NOTCH2	intron	0.974	0.99760	0.0364	0.9482		6
rs17024577	1:120506032	A/G	NOTCH2	intron	0.974	0.99950	0.0362	0.9883		5
rs17024584	1:120511386	A/G	NOTCH2	intron	0.974	1.00763	0.0362	0.8338		4
rs17024593	1:120515554	A/T	NOTCH2	intron	0.971	1.00975	0.0363	0.7899		5
rs17186372	1:120500951	C/G	NOTCH2	intron	0.878	1.02491	0.0254	0.334		4
rs17258579	1:120469077	T/C	NOTCH2	intron	0.908	0.99880	0.0159	0.9393		7
rs17258599	1:120515284	T/C	NOTCH2	intron	0.876	1.02870	0.0255	0.268		7
rs17258606	1:120517702	T/C	NOTCH2	intron	0.945	0.99930	0.0378	0.9844		6
rs1738647	1:120532209	T/C	NOTCH2	intron	0.933	0.99501	0.0188	0.7917		6
rs1805257	1:120552215	C/G	NOTCH2	intron	0.770	0.99960	0.0224	0.9848		6
rs2453040	1:120529750	A/C	NOTCH2	intron	0.996	1.00995	0.0177	0.5774		4
rs2453042	1:120528932	A/G	NOTCH2	intron	0.991	0.98876	0.0160	0.4785		4
rs2453044	1:120508524	A/G	NOTCH2	intron	0.993	1.01096	0.0161	0.4976		7
rs2453051	1:120499573	A/C	NOTCH2	intron	0.939	1.01147	0.0188	0.5456		7
rs2453055	1:120495934	C/G	NOTCH2	intron	0.969	0.98699	0.0164	0.4232		6
rs2453056	1:120477998	A/C	NOTCH2	intron,untranslated-3	0.993	0.98758	0.0161	0.4362		7
rs2453058	1:120480709	T/C	NOTCH2	intron	0.996	0.98837	0.0176	0.5088		7
rs2493389	1:120474178	T/C	NOTCH2	intron	0.986	0.98946	0.0177	0.5495		7
rs2493390	1:120473066	A/G	NOTCH2	intron	0.996	1.01126	0.0176	0.5251		6
rs2493391	1:120472507	A/C	NOTCH2	intron	0.996	0.98886	0.0176	0.5252		5
rs2493392	1:120471857	T/C	NOTCH2	intron	0.996	0.98876	0.0176	0.5225		6
rs2493394	1:120471224	A/G	NOTCH2	intron	0.997	1.01177	0.0176	0.5056		6
rs2493410	1:120508803	T/C	NOTCH2	intron	0.992	1.01248	0.0160	0.437		5
rs2493411	1:120506786	T/C	NOTCH2	intron	0.993	1.01177	0.0161	0.4677		6
rs2493413	1:120499574	A/G	NOTCH2	intron	0.939	0.98866	0.0188	0.5456		7
rs2493415	1:120492200	A/G	NOTCH2	intron	0.983	0.98778	0.0177	0.4851		7
rs2493416	1:120492164	C/G	NOTCH2	intron	0.974	0.98778	0.0164	0.4539		7
rs2493419	1:120485517	A/G	NOTCH2	intron	0.983	0.98432	0.0161	0.3254		6
rs2493420	1:120484421	A/G	NOTCH2	intron	0.993	0.98649	0.0161	0.3984		7
rs2641316	1:120525554	T/C	NOTCH2	intron	0.991	0.98896	0.0160	0.486		5
rs2641317	1:120516618	T/C	NOTCH2	intron	0.995	0.98916	0.0177	0.5397		7
rs2641344	1:120554499	T/C	NOTCH2	intron	0.683	0.99700	0.0262	0.91		7
rs2793829	1:120461253	T/C	NOTCH2	intron	0.996	0.98807	0.0176	0.4981		7
rs2793830	1:120466108	A/G	NOTCH2	intron	0.992	0.98639	0.0159	0.3883		7
rs2793831	1:120523902	T/C	NOTCH2	intron	0.997	1.01045	0.0177	0.5568		5
rs2934381	1:120506108	A/G	NOTCH2	intron	0.996	0.99025	0.0177	0.5804		5
rs2934387	1:120495506	T/C	NOTCH2	intron	0.996	1.01136	0.0177	0.5229		6
rs327195	1:120567801	C/G	NOTCH2	intron	0.674	1.00904	0.0262	0.7303		5
rs327197	1:120570448	T/C	NOTCH2	intron	0.625	0.99293	0.0199	0.7217		6
rs3795666	1:120458924	A/G	NOTCH2	coding-synon	0.948	0.99720	0.0378	0.9414		7
rs41277622	1:120457481	T/C	NOTCH2	untranslated-3	0.773	1.00120	0.0496	0.9802		7
rs41277624	1:120459433	A/G	NOTCH2	intron	0.867	1.00753	0.0281	0.7904		7
rs41463147	1:120554134	T/G	NOTCH2	intron	0.784	0.99531	0.0216	0.8284		7
rs422334	1:120571561	A/G	NOTCH2	intron	0.626	1.02501	0.0251	0.3257		5
rs4659248	1:120474899	T/C	NOTCH2	intron	0.634	0.96127	0.0180	0.02842		7
rs4659250	1:120498086	C/G	NOTCH2	intron	0.987	1.01369	0.0159	0.394		7
rs5025718	1:120478285	T/C	NOTCH2	intron	0.988	0.98610	0.0159	0.3807		7
rs59024536	1:120490046	T/C	NOTCH2	intron	0.974	1.00552	0.0359	0.8781		5
rs61200250	1:120608075	A/G	NOTCH2	intron	0.601	1.02778	0.0460	0.552		6
rs6685892	1:120458004	A/T	NOTCH2	coding-synon	0.996	1.01197	0.0176	0.4988		7
rs6688004	1:120474507	T/G	NOTCH2	intron	0.987	1.01379	0.0159	0.3911		6
rs699779	1:120455310	A/G	NOTCH2	untranslated-3	0.994	1.01025	0.0176	0.5635		7
rs72697235	1:120470445	T/C	NOTCH2	intron	0.628	0.96223	0.0180	0.03273		6
rs72697237	1:120473425	A/T	NOTCH2	intron	0.991	1.01045	0.0177	0.5562		6
rs72697239	1:120478807	T/C	NOTCH2	intron	0.877	0.97395	0.0254	0.3		7
rs72697252	1:120520317	T/C	NOTCH2	intron	0.749	1.04321	0.0439	0.336		6
rs74115509	1:120522764	T/C	NOTCH2	intron	0.970	1.00874	0.0363	0.8103		7
rs74117505	1:120469983	A/C	NOTCH2	intron	0.974	0.99501	0.0359	0.8895		7
rs74117563	1:120487636	T/G	NOTCH2	intron	0.974	1.00622	0.0359	0.8635		6
rs74117565	1:120487938	A/G	NOTCH2	intron	0.974	0.99432	0.0359	0.8745		6
rs74117567	1:120488880	A/C	NOTCH2	intron	0.972	1.00481	0.0360	0.8937		7
rs74117568	1:120489335	A/T	NOTCH2	intron	0.974	0.99442	0.0359	0.8766		7
rs74117570	1:120490204	T/C	NOTCH2	intron	0.974	1.00552	0.0359	0.8786		5
rs7414396	1:120473725	T/C	NOTCH2	intron	0.864	1.01005	0.0183	0.5835		6
rs74338522	1:120489877	A/G	NOTCH2	intron	0.603	0.94677	0.0389	0.159		7
rs7534586	1:120496127	A/C	NOTCH2	intron	0.996	1.01147	0.0177	0.5177		5
rs76896471	1:120470314	A/G	NOTCH2	intron	0.790	0.98659	0.0344	0.6939		7
rs77542178	1:120515032	T/C	NOTCH2	intron	0.658	0.90638	0.0461	0.03292		5
rs835573	1:120464165	T/C	NOTCH2	intron	0.995	0.98708	0.0161	0.4211		6
rs835574	1:120463230	T/C	NOTCH2	intron	0.987	0.98570	0.0159	0.3651		5
rs835575	1:120456563	T/G	NOTCH2	untranslated-3	0.996	0.98886	0.0176	0.525		5
rs835576	1:120455586	T/C	NOTCH2	untranslated-3	0.994	1.01005	0.0176	0.5683		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information