NISCH

Basic Information

Gene Symbol	NISCH
Entrez Id	11188
Position	chr3:52489524..52527088
Description	nischarin
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1011063	3:52506848	T/C	NISCH	intron	0.995	1.00692	0.0141	0.6262		6
rs1011064	3:52504503	T/C	NISCH	intron	0.999	1.02542	0.0247	0.3103		7
rs1035002	3:52488202	T/C	NISCH	near-gene-5	0.991	1.02757	0.0251	0.2786		5
rs1035003	3:52504133	T/G	NISCH	intron	0.999	1.02521	0.0247	0.3136		7
rs10865972	3:52491447	A/C	NISCH	intron	1.000	1.02788	0.0232	0.237		1b
rs113058288	3:52496054	A/C	NISCH	intron	0.684	1.05443	0.0633	0.4025		5
rs115497146	3:52520630	T/G	NISCH	intron	0.887	0.97883	0.0525	0.6844		6
rs115737376	3:52493896	A/G	NISCH	intron	0.730	1.05232	0.0275	0.0632		6
rs11921116	3:52508406	A/G	NISCH	intron	0.828	1.01593	0.0197	0.4229		7
rs11921913	3:52508534	A/G	NISCH	intron,near-gene-5	0.761	0.99342	0.0175	0.7063		7
rs11928763	3:52508474	A/G	NISCH	intron	0.761	1.01837	0.0177	0.3051		6
rs12629472	3:52491836	A/G	NISCH	intron	0.866	1.06078	0.0140	0.00002401		3a
rs13074649	3:52494141	A/G	NISCH	intron	0.998	0.97472	0.0248	0.3017		6
rs13094915	3:52507719	C/G	NISCH	intron	0.904	0.95437	0.0113	0.00003639		6
rs140187302	3:52503735	A/G	NISCH	intron	0.846	0.95294	0.0276	0.08067		-
rs142281710	3:52507473	C/G	NISCH	intron	0.824	1.01979	0.0439	0.6548		-
rs143380194	3:52520867	T/C	NISCH	intron	0.827	0.97853	0.0433	0.6173		-
rs148061664	3:52493865	A/G	NISCH	intron	0.830	1.01908	0.0430	0.6605		-
rs1541495	3:52492707	T/C	NISCH	coding-synon	0.997	0.96783	0.0239	0.1707		5
rs17263770	3:52519854	C/G	NISCH	intron	0.985	1.00924	0.0169	0.5857		5
rs183032337	3:52507803	T/C	NISCH	coding-synon	0.838	0.98501	0.0531	0.7768		-
rs2109558	3:52501616	C/G	NISCH	intron	0.999	1.03334	0.0239	0.1699		6
rs2109559	3:52512318	A/G	NISCH	intron	0.996	0.96812	0.0239	0.1743		5
rs2159607	3:52501451	T/G	NISCH	intron	0.979	1.00914	0.0144	0.5283		7
rs2215466	3:52489074	A/G	NISCH	near-gene-5	0.997	0.97336	0.0250	0.2798		2b
rs2267921	3:52491046	T/C	NISCH	intron	0.867	0.94233	0.0140	0.000021		5
rs2335928	3:52498782	A/C	NISCH	intron	0.997	0.97580	0.0247	0.322		6
rs2335929	3:52498966	A/G	NISCH	intron	0.999	0.97521	0.0247	0.3107		7
rs34261027	3:52490391	A/G	NISCH	intron	0.987	0.99581	0.0143	0.7704		2b
rs35258126	3:52493412	T/C	NISCH	intron	0.772	1.04886	0.0244	0.05106		5
rs3821839	3:52488639	C/G	NISCH	near-gene-5	0.867	0.94299	0.0140	0.00002633		5
rs41292364	3:52513898	C/G	NISCH	intron,near-gene-5	0.721	1.04060	0.0272	0.1426		5
rs4312651	3:52506282	A/G	NISCH	intron	1.000	0.97492	0.0247	0.305		4
rs4687541	3:52495365	T/G	NISCH	intron	0.998	1.02583	0.0248	0.3032		7
rs4687543	3:52510982	T/C	NISCH	intron	0.971	1.03749	0.0234	0.1159		7
rs4687544	3:52520502	A/C	NISCH	intron	0.994	1.02644	0.0248	0.2921		6
rs4687614	3:52492085	A/G	NISCH	intron	0.997	1.02788	0.0247	0.266		1f
rs4687616	3:52501109	T/C	NISCH	intron	0.939	0.97580	0.0245	0.3183		6
rs4687617	3:52509277	A/G	NISCH	intron,near-gene-5	0.998	1.03355	0.0239	0.1669		7
rs4687618	3:52513940	T/C	NISCH	intron,near-gene-5	0.996	0.97453	0.0248	0.297		5
rs4687619	3:52518786	T/C	NISCH	intron	0.995	0.97249	0.0248	0.2595		5
rs4687621	3:52524974	A/C	NISCH	intron	0.993	0.97336	0.0248	0.2768		4
rs62257617	3:52492601	T/C	NISCH	intron	0.787	0.98295	0.0298	0.5627		5
rs6414568	3:52501292	T/C	NISCH	intron	0.999	0.97521	0.0247	0.3099		7
rs6445483	3:52503701	A/G	NISCH	intron	0.957	0.96996	0.0244	0.2118		6
rs6445484	3:52503800	A/G	NISCH	intron	0.999	0.97502	0.0247	0.3064		7
rs6445485	3:52503823	T/C	NISCH	intron	0.999	0.97521	0.0247	0.3112		7
rs6445486	3:52506491	A/G	NISCH	intron	1.000	0.97541	0.0247	0.3132		1f
rs6771558	3:52497254	C/G	NISCH	intron	0.998	0.97482	0.0248	0.3024		5
rs6772191	3:52497849	T/C	NISCH	intron	0.832	1.04540	0.0218	0.04147		6
rs6776759	3:52494588	A/T	NISCH	intron	0.995	1.00723	0.0168	0.6673		6
rs6782162	3:52500452	C/G	NISCH	intron	0.999	0.97521	0.0247	0.3101		6
rs6800707	3:52516293	C/G	NISCH	intron,near-gene-3,untranslated-5	0.978	0.99134	0.0144	0.5467		4
rs724801	3:52488517	T/C	NISCH	near-gene-5	0.993	1.00622	0.0169	0.7117		5
rs728408	3:52517206	A/G	NISCH	intron	0.995	1.03324	0.0239	0.171		4
rs758803	3:52515533	T/C	NISCH	intron,untranslated-5	0.996	0.97424	0.0248	0.2911		5
rs77768459	3:52522091	A/C	NISCH	coding-synon	0.793	1.16114	0.0645	0.02054		5
rs79175419	3:52491707	A/G	NISCH	intron	0.698	1.02000	0.0306	0.5174		2b
rs79421718	3:52496369	C/G	NISCH	intron	0.910	0.99521	0.0541	0.9294		6
rs887514	3:52522659	T/C	NISCH	intron	0.993	0.96735	0.0239	0.1653		5
rs887515	3:52523405	T/C	NISCH	missense	0.977	1.00491	0.0143	0.7289		5
rs929528	3:52505445	T/C	NISCH	intron	0.999	1.02552	0.0247	0.309		5
rs929529	3:52505525	T/C	NISCH	intron	0.995	0.97668	0.0247	0.3396		5
rs968588	3:52489564	A/T	NISCH	near-gene-5,untranslated-5	0.867	0.96647	0.0238	0.1518		2a
rs9847332	3:52500521	T/C	NISCH	intron	0.999	0.97550	0.0247	0.316		7
rs9850471	3:52492475	A/G	NISCH	intron	0.998	0.97443	0.0248	0.2963		5
rs9855470	3:52493275	A/G	NISCH	intron	1.000	0.97609	0.0246	0.3244		1f
rs9856575	3:52510592	A/G	NISCH	untranslated-5	0.852	0.99900	0.0411	0.9802		5
rs9867823	3:52513027	C/G	NISCH	intron,near-gene-5	0.977	1.02183	0.0250	0.3871		1f
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information