NCK1

Basic Information

Gene Symbol	NCK1
Entrez Id	4690
Position	chr3:136581050..136667968
Description	NCK adaptor protein 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10804645	3:136643734	A/G	NCK1	intron	0.971	1.02675	0.0129	0.0404		6
rs10935210	3:136651153	A/G	NCK1	intron	0.997	1.03842	0.0115	0.001052		6
rs111356566	3:136590724	T/C	NCK1	intron	0.766	1.01086	0.0537	0.84		7
rs112515324	3:136586707	A/G	NCK1	intron	0.765	0.98916	0.0537	0.8397		5
rs114273910	3:136621469	A/G	NCK1	intron	0.876	1.02685	0.0378	0.4844		5
rs114383431	3:136622466	T/C	NCK1	intron	0.736	0.94516	0.0335	0.09282		7
rs115290401	3:136611972	A/G	NCK1	intron	0.847	1.05180	0.0225	0.02502		6
rs115751655	3:136580897	T/G	NCK1	near-gene-5,ncRNA	0.669	1.05159	0.0450	0.2635		4
rs11921170	3:136605797	T/C	NCK1	intron	0.960	1.04676	0.0115	0.00006617		6
rs12330283	3:136590411	T/C	NCK1	intron	0.997	0.96358	0.0115	0.001241		6
rs12487901	3:136590302	A/C	NCK1	intron	0.988	0.96425	0.0115	0.001582		6
rs12488365	3:136606478	A/C	NCK1	intron	0.998	0.96348	0.0115	0.001206		5
rs12491278	3:136599052	A/G	NCK1	intron	0.988	0.96522	0.0115	0.002086		7
rs12629000	3:136643571	A/T	NCK1	intron	0.995	0.97035	0.0130	0.02105		6
rs12630955	3:136586154	T/C	NCK1	intron	0.996	1.03738	0.0115	0.001414		7
rs12633003	3:136608606	A/C	NCK1	intron	0.991	0.96474	0.0115	0.001776		7
rs12633073	3:136608649	A/G	NCK1	intron	0.953	0.96551	0.0115	0.00234		7
rs12637949	3:136592187	A/C	NCK1	intron	0.997	1.03780	0.0115	0.00125		6
rs13077864	3:136609838	T/C	NCK1	intron	0.993	0.97190	0.0131	0.02932		7
rs13315318	3:136655672	T/C	NCK1	intron	0.997	1.03821	0.0115	0.00111		6
rs13320485	3:136664737	T/C	NCK1	missense	0.959	1.02378	0.0459	0.6078		7
rs1344790	3:136651964	A/C	NCK1	intron	0.997	1.03873	0.0115	0.0009627		5
rs1347209	3:136626697	T/G	NCK1	intron	0.983	0.96831	0.0109	0.003319		7
rs138345774	3:136637853	A/G	NCK1	intron	0.855	0.84705	0.0540	0.002107		-
rs139949181	3:136587323	T/C	NCK1	intron	0.806	1.05802	0.0376	0.1339		-
rs140160518	3:136607115	A/T	NCK1	intron	0.815	1.04488	0.0469	0.3492		-
rs140227533	3:136581293	T/C	NCK1	intron,near-gene-5	0.608	0.93370	0.0528	0.1937		-
rs140857300	3:136661743	A/C	NCK1	intron	0.934	1.03603	0.0527	0.5025		-
rs140904246	3:136612022	A/G	NCK1	intron	0.683	0.97824	0.0136	0.1068		-
rs142114705	3:136588269	C/G	NCK1	intron	0.708	1.01420	0.0393	0.7201		-
rs142429549	3:136659652	T/G	NCK1	intron	0.775	1.10672	0.0564	0.07225		-
rs142439304	3:136609779	A/G	NCK1	intron	0.817	1.07186	0.0650	0.2852		-
rs143982667	3:136651723	T/C	NCK1	intron	0.832	0.92164	0.0606	0.1784		-
rs144132680	3:136583204	C/G	NCK1	intron	0.807	1.02860	0.0382	0.4599		-
rs144725818	3:136610875	T/G	NCK1	intron	0.776	0.94384	0.0537	0.281		-
rs144856134	3:136615413	A/T	NCK1	intron	0.938	0.93679	0.0419	0.1189		-
rs145123315	3:136599023	A/G	NCK1	intron	0.853	1.01643	0.0243	0.5042		-
rs145150020	3:136635293	T/C	NCK1	intron	0.751	1.03593	0.0317	0.2661		-
rs145198756	3:136615895	A/G	NCK1	intron	0.621	1.05527	0.0534	0.3132		-
rs146562057	3:136587192	T/C	NCK1	intron	0.923	0.96425	0.0471	0.44		-
rs146942254	3:136624122	T/C	NCK1	intron,near-gene-5	0.913	1.01969	0.0548	0.7213		-
rs147764400	3:136595234	T/C	NCK1	intron	0.721	0.94800	0.0575	0.3525		-
rs149852633	3:136607406	A/G	NCK1	intron	0.824	0.92404	0.0651	0.2247		-
rs150129538	3:136612250	T/C	NCK1	intron	0.763	1.17539	0.0546	0.003048		-
rs150274722	3:136642136	A/G	NCK1	intron	0.696	1.07950	0.0458	0.09477		-
rs1609391	3:136615268	A/G	NCK1	intron	0.978	0.95466	0.0108	0.00001833		7
rs16844241	3:136635171	A/G	NCK1	intron	0.995	0.97074	0.0130	0.02283		5
rs17301365	3:136662529	T/C	NCK1	intron	1.000	1.03531	0.0181	0.05522		5
rs17366890	3:136636583	A/C	NCK1	intron	0.988	1.01837	0.0139	0.1906		7
rs181555680	3:136647638	T/G	NCK1	intron,near-gene-5	0.877	1.04791	0.0275	0.08818		-
rs181598029	3:136581968	A/G	NCK1	intron,near-gene-5	0.892	1.05876	0.0621	0.3581		-
rs183516034	3:136585947	T/C	NCK1	intron	0.601	0.99790	0.0176	0.9051		-
rs184102342	3:136650975	A/G	NCK1	intron	0.970	0.96031	0.0196	0.0388		-
rs186923231	3:136664155	T/G	NCK1	intron	0.841	0.96532	0.0442	0.4234		-
rs188199784	3:136593217	T/C	NCK1	intron	0.650	1.12705	0.0635	0.05961		-
rs190511053	3:136647637	A/C	NCK1	intron,near-gene-5	0.890	0.95935	0.0276	0.1328		-
rs191755939	3:136624066	A/G	NCK1	intron,near-gene-5	0.876	1.15731	0.0551	0.008025		-
rs192762265	3:136585939	T/C	NCK1	intron	0.633	0.98946	0.0247	0.6684		-
rs192947044	3:136645876	T/C	NCK1	intron	0.805	0.91787	0.0598	0.1518		-
rs1965106	3:136648607	T/C	NCK1	intron,near-gene-5	0.997	1.03821	0.0115	0.001111		7
rs1965107	3:136648643	A/T	NCK1	intron,near-gene-5	0.996	0.97113	0.0130	0.02459		6
rs1965108	3:136648693	A/G	NCK1	intron,near-gene-5	0.997	0.96348	0.0115	0.001244		6
rs1965109	3:136651517	C/G	NCK1	intron	0.997	0.96310	0.0115	0.001098		4
rs1971788	3:136645809	T/G	NCK1	intron	0.997	0.96281	0.0115	0.001007		6
rs2031029	3:136599814	A/T	NCK1	intron	0.999	0.96310	0.0115	0.001077		5
rs2043365	3:136650927	T/C	NCK1	intron	0.951	1.02706	0.0130	0.03983		7
rs2117009	3:136633571	A/T	NCK1	intron	0.985	1.03076	0.0109	0.005594		5
rs2117010	3:136591583	A/T	NCK1	intron	0.997	1.03780	0.0115	0.001243		7
rs2138540	3:136621325	T/C	NCK1	intron	0.998	1.03790	0.0115	0.001226		7
rs2138541	3:136621438	A/T	NCK1	intron	0.995	0.96281	0.0115	0.001003		5
rs2176270	3:136621188	T/C	NCK1	intron	0.994	1.02881	0.0131	0.02978		6
rs2343662	3:136601046	A/T	NCK1	intron	0.974	0.96474	0.0115	0.001839		6
rs2343663	3:136600945	A/G	NCK1	intron	0.998	1.03769	0.0115	0.001291		5
rs28370972	3:136636685	T/C	NCK1	intron	0.979	0.97472	0.0153	0.09298		7
rs28489326	3:136634546	T/C	NCK1	intron	0.979	0.97404	0.0152	0.08266		7
rs28564581	3:136583160	C/G	NCK1	intron	0.929	0.96793	0.0116	0.004909		7
rs28672119	3:136583265	C/G	NCK1	intron	0.977	0.96291	0.0115	0.001059		7
rs34799319	3:136586618	A/G	NCK1	intron	0.977	0.95437	0.0108	0.00001669		5
rs35127615	3:136625269	A/G	NCK1	intron	0.988	1.01715	0.0140	0.2255		7
rs35339486	3:136614239	T/C	NCK1	intron	0.998	0.96348	0.0115	0.001235		7
rs35760633	3:136588926	T/C	NCK1	intron	0.996	1.03769	0.0115	0.001288		7
rs3845925	3:136662062	A/G	NCK1	intron	0.996	0.96291	0.0115	0.001012		6
rs3856623	3:136647807	T/C	NCK1	intron,near-gene-5	0.997	0.96310	0.0115	0.001093		5
rs3915455	3:136647904	T/C	NCK1	intron,near-gene-5	0.996	1.03811	0.0115	0.001141		7
rs3963921	3:136654684	T/C	NCK1	intron	0.997	0.96310	0.0115	0.001103		5
rs4594566	3:136646068	T/C	NCK1	intron	0.959	0.96667	0.0115	0.00325		6
rs4678272	3:136610630	T/G	NCK1	intron	0.998	0.96339	0.0115	0.001166		6
rs4678273	3:136610633	A/C	NCK1	intron	0.998	1.03800	0.0115	0.001165		7
rs4678274	3:136639237	T/G	NCK1	intron	0.996	1.03645	0.0115	0.001874		5
rs4678275	3:136653683	A/G	NCK1	intron	0.995	0.97045	0.0130	0.02122		6
rs4678276	3:136660930	T/G	NCK1	intron	0.996	0.96281	0.0115	0.0009965		7
rs4678450	3:136610945	A/G	NCK1	intron	0.998	0.96329	0.0115	0.001159		7
rs4678451	3:136610996	T/C	NCK1	intron	0.998	1.03821	0.0115	0.001127		6
rs4678452	3:136621717	A/C	NCK1	intron	0.997	1.03759	0.0115	0.001319		5
rs62408868	3:136663635	T/C	NCK1	intron	0.889	1.02480	0.0298	0.4118		7
rs62410402	3:136590593	A/G	NCK1	intron	0.847	1.05001	0.0225	0.03016		7
rs6414337	3:136632537	A/G	NCK1	intron	0.903	1.03138	0.0128	0.01577		7
rs6439673	3:136592956	A/G	NCK1	intron	0.997	1.03780	0.0115	0.001244		6
rs6439675	3:136625436	A/G	NCK1	intron	0.988	0.96870	0.0109	0.003656		7
rs6777873	3:136582872	A/G	NCK1	intron,near-gene-5	0.941	0.96194	0.0115	0.000779		6
rs6782716	3:136654952	A/G	NCK1	intron	0.958	1.03790	0.0116	0.001305		7
rs6783508	3:136619566	A/G	NCK1	intron	0.997	1.03769	0.0115	0.001285		5
rs6783999	3:136642823	T/C	NCK1	intron	0.997	0.96319	0.0115	0.001108		6
rs6786302	3:136656029	A/G	NCK1	intron	0.997	1.03894	0.0115	0.0008945		5
rs6786648	3:136590470	T/C	NCK1	intron	0.997	0.96377	0.0115	0.001338		7
rs6797509	3:136584772	T/C	NCK1	intron	0.995	1.03769	0.0115	0.001292		6
rs6800032	3:136622560	T/C	NCK1	intron	0.995	0.96358	0.0115	0.001295		7
rs6800690	3:136623026	A/G	NCK1	intron,near-gene-5	0.986	0.96851	0.0109	0.003453		5
rs71630059	3:136581611	A/G	NCK1	intron,near-gene-5	0.993	1.02860	0.0131	0.03112		4
rs73231937	3:136607198	A/G	NCK1	intron	0.999	0.96464	0.0185	0.05108		7
rs73231943	3:136621618	T/C	NCK1	intron	1.000	1.03842	0.0181	0.03752		4
rs73231944	3:136622008	A/C	NCK1	intron	1.000	1.03728	0.0181	0.04367		7
rs73231953	3:136639515	A/G	NCK1	intron	1.000	0.96464	0.0181	0.04674		5
rs73231958	3:136644278	A/G	NCK1	intron	1.000	0.96532	0.0181	0.05057		4
rs73231966	3:136652134	A/G	NCK1	intron	1.000	0.96474	0.0181	0.0474		5
rs73231974	3:136659841	A/G	NCK1	intron	1.000	0.96599	0.0184	0.06057		6
rs7431100	3:136644887	A/G	NCK1	intron	0.997	0.96319	0.0115	0.001115		5
rs74736071	3:136604687	A/G	NCK1	intron	0.790	0.89799	0.0594	0.0702		5
rs75325304	3:136631684	C/G	NCK1	intron	0.809	0.93351	0.0495	0.1643		7
rs75774739	3:136632352	C/G	NCK1	intron	0.722	0.93333	0.0531	0.1938		7
rs7627443	3:136584220	C/G	NCK1	intron	0.998	0.96339	0.0115	0.001204		7
rs7629882	3:136604040	T/C	NCK1	intron	0.998	1.03800	0.0115	0.001193		7
rs76316086	3:136656952	A/T	NCK1	intron	0.934	0.96522	0.0527	0.5025		5
rs7647451	3:136653928	C/G	NCK1	intron	0.995	1.03832	0.0115	0.001074		6
rs7648817	3:136649463	T/C	NCK1	intron	0.997	0.96348	0.0115	0.001228		4
rs77203258	3:136657359	T/C	NCK1	intron	0.795	1.00210	0.0231	0.9272		4
rs78568074	3:136600309	T/C	NCK1	intron	0.670	0.95190	0.0671	0.4622		6
rs78597065	3:136596318	C/G	NCK1	intron	0.819	1.03396	0.0239	0.1626		7
rs79593743	3:136639884	A/G	NCK1	intron	0.840	1.08123	0.0506	0.1228		5
rs79929954	3:136623748	A/G	NCK1	intron,near-gene-5	0.791	0.94365	0.0507	0.2523		6
rs79989361	3:136583550	A/T	NCK1	intron	0.834	0.96618	0.0389	0.3762		6
rs80201571	3:136659779	T/G	NCK1	intron	0.985	1.02768	0.0132	0.03925		6
rs9289523	3:136635589	C/G	NCK1	intron	0.984	1.03231	0.0110	0.003749		6
rs938525	3:136581953	T/C	NCK1	intron,near-gene-5	0.996	0.96358	0.0115	0.001251		4
rs9811169	3:136600083	A/G	NCK1	intron	0.997	1.03811	0.0115	0.001142		6
rs9815771	3:136604697	T/C	NCK1	intron	0.998	1.03780	0.0115	0.001267		5
rs9817967	3:136629490	A/G	NCK1	intron	0.988	0.96899	0.0109	0.003931		6
rs9818792	3:136589320	T/C	NCK1	intron	0.997	0.96368	0.0115	0.001306		7
rs9819804	3:136583956	T/C	NCK1	intron	0.968	0.96705	0.0115	0.00367		7
rs9828009	3:136631275	T/C	NCK1	intron	0.987	0.96899	0.0109	0.003997		5
rs9833022	3:136632122	T/C	NCK1	intron	0.957	1.02102	0.0459	0.6502		6
rs9833952	3:136662603	A/G	NCK1	intron	0.996	0.96291	0.0115	0.00101		5
rs9834861	3:136592217	A/G	NCK1	intron	0.997	0.96358	0.0115	0.001245		7
rs9837990	3:136632936	C/G	NCK1	intron	0.987	1.03210	0.0109	0.003824		6
rs9838022	3:136608841	T/C	NCK1	intron	0.997	0.96319	0.0115	0.001117		7
rs9840500	3:136621338	A/G	NCK1	intron	0.995	0.98600	0.0127	0.2665		7
rs9841985	3:136608899	C/G	NCK1	intron	0.992	1.03821	0.0115	0.001135		6
rs9842145	3:136608972	T/C	NCK1	intron	0.959	0.96793	0.0115	0.004537		7
rs9842400	3:136660223	T/C	NCK1	intron	0.971	1.03686	0.0116	0.001737		7
rs9842436	3:136609017	A/G	NCK1	intron	0.998	0.96329	0.0115	0.001154		7
rs9843733	3:136599212	C/G	NCK1	intron	0.995	1.03842	0.0115	0.001061		5
rs9845460	3:136587117	A/G	NCK1	intron	0.994	1.02932	0.0130	0.02658		7
rs9846334	3:136615226	T/C	NCK1	intron	0.998	0.96348	0.0115	0.001234		7
rs9846691	3:136606271	T/C	NCK1	intron	0.998	1.03821	0.0115	0.001101		7
rs9846754	3:136645413	A/G	NCK1	intron	0.992	0.96416	0.0115	0.001505		7
rs9848867	3:136600048	T/C	NCK1	intron	0.998	0.96319	0.0115	0.001108		7
rs9851726	3:136646387	C/G	NCK1	intron	0.997	1.03832	0.0115	0.0011		6
rs9853404	3:136583786	A/T	NCK1	intron	0.899	0.94092	0.0296	0.03969		6
rs9853417	3:136611230	A/G	NCK1	intron	0.998	0.96329	0.0115	0.001155		2b
rs9855314	3:136601645	A/G	NCK1	intron	0.996	0.96435	0.0115	0.001602		3a
rs9856828	3:136607982	T/C	NCK1	intron	0.997	1.03790	0.0115	0.001219		7
rs9859665	3:136602161	T/C	NCK1	intron	0.998	0.96329	0.0115	0.001162		5
rs9859810	3:136629986	A/G	NCK1	intron	0.988	1.03221	0.0109	0.003809		7
rs9863551	3:136605851	A/G	NCK1	intron	0.993	1.03873	0.0115	0.0009686		7
rs9864941	3:136613787	A/G	NCK1	intron	0.996	0.96339	0.0115	0.001214		7
rs9870377	3:136597120	A/G	NCK1	intron	0.968	1.04676	0.0109	0.0000252		7
rs9874887	3:136601562	A/T	NCK1	intron	0.998	0.96329	0.0115	0.001161		4
rs9877089	3:136656593	T/C	NCK1	intron	0.981	1.02173	0.0137	0.1162		5
rs9878117	3:136621007	A/G	NCK1	intron	0.998	0.96368	0.0115	0.00129		5
rs9878367	3:136612149	T/C	NCK1	intron	0.996	1.03728	0.0115	0.001493		6
rs9878464	3:136586506	C/G	NCK1	intron	0.998	1.03811	0.0115	0.001151		7
rs9879531	3:136638975	A/G	NCK1	intron	0.993	0.98531	0.0126	0.2425		5
rs9881139	3:136634040	A/G	NCK1	intron	0.987	1.03231	0.0109	0.003667		5
rs9883108	3:136586853	C/G	NCK1	intron	0.952	0.96696	0.0116	0.003676		5
rs9883131	3:136594347	A/G	NCK1	intron	0.998	1.03790	0.0115	0.001202		7
rs9883979	3:136645417	A/G	NCK1	intron	0.997	1.03832	0.0115	0.00109		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information