NCAN

Basic Information

Gene Symbol	NCAN
Entrez Id	1463
Position	chr19:19322782..19363061
Description	neurocan
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10402294	19:19354937	T/C	NCAN	intron	0.917	0.95056	0.0122	0.00003412		6
rs10403859	19:19342911	A/G	NCAN	intron	0.970	1.04008	0.0301	0.1919		5
rs10406659	19:19339646	A/G	NCAN	intron	0.952	0.95686	0.0286	0.124		5
rs10408021	19:19355908	A/G	NCAN	intron	0.965	0.96387	0.0211	0.08096		7
rs10411761	19:19352718	C/G	NCAN	intron	0.939	0.95925	0.0308	0.1776		7
rs10413570	19:19352819	T/C	NCAN	intron	0.888	0.97365	0.0174	0.1258		7
rs10414343	19:19356390	C/G	NCAN	intron	0.967	0.95935	0.0172	0.01543		7
rs10416080	19:19356992	A/G	NCAN	intron	0.970	1.03956	0.0174	0.02589		7
rs10418279	19:19353425	A/G	NCAN	intron	0.904	0.95485	0.0297	0.1199		7
rs10423874	19:19359500	C/G	NCAN	intron	1.010	0.94374	0.0144	0.00005969		7
rs10424369	19:19345356	T/C	NCAN	intron	0.968	1.04154	0.0301	0.1768		4
rs111280672	19:19331547	A/G	NCAN	intron	0.924	0.98108	0.0196	0.3301		7
rs111444407	19:19358207	T/C	NCAN	intron	0.990	1.06364	0.0148	0.00003025		7
rs111492783	19:19357612	A/G	NCAN	intron	0.988	0.94346	0.0151	0.0001112		6
rs112014012	19:19331858	A/G	NCAN	intron	0.950	0.96464	0.0302	0.2326		7
rs112219496	19:19358086	A/G	NCAN	intron	0.993	1.06194	0.0147	0.00004467		7
rs112254184	19:19331562	T/C	NCAN	intron	0.919	0.98020	0.0199	0.3158		6
rs112407494	19:19352065	C/G	NCAN	intron	0.951	0.95428	0.0308	0.1288		6
rs112823387	19:19342455	C/G	NCAN	intron	0.971	0.95266	0.0304	0.111		7
rs113219907	19:19355966	A/G	NCAN	intron	0.885	1.04039	0.0420	0.3452		7
rs116953692	19:19328866	T/G	NCAN	intron	0.913	1.00351	0.0240	0.8836		6
rs12459735	19:19330155	A/G	NCAN	intron	0.933	1.01025	0.0191	0.593		5
rs12981871	19:19348947	T/C	NCAN	intron	0.784	1.10329	0.0627	0.1168		5
rs13345554	19:19351353	T/C	NCAN	intron	0.961	0.95829	0.0305	0.1617		5
rs139100357	19:19326822	A/G	NCAN	intron,near-gene-5	0.741	1.00040	0.0552	0.9941		-
rs139943885	19:19322751	A/C	NCAN	near-gene-5	0.627	1.01532	0.0576	0.7921		-
rs141714416	19:19358948	T/C	NCAN	intron	0.776	0.99631	0.0401	0.9259		-
rs142099612	19:19343793	A/G	NCAN	intron	0.887	1.02000	0.0258	0.4417		-
rs142137115	19:19340925	T/C	NCAN	intron	0.737	0.98216	0.0558	0.7466		-
rs149446211	19:19327153	A/C	NCAN	intron	0.918	0.99770	0.0240	0.9251		-
rs149689976	19:19323042	A/G	NCAN	intron	0.818	1.02870	0.0506	0.5759		-
rs151210746	19:19333278	A/G	NCAN	intron	0.903	1.01106	0.0257	0.6677		-
rs17215684	19:19349980	T/C	NCAN	intron	0.876	1.01816	0.0205	0.3782		5
rs182492826	19:19330823	A/G	NCAN	intron	0.722	0.92533	0.0436	0.07553		-
rs185127484	19:19326066	A/G	NCAN	intron,near-gene-5	0.823	0.96291	0.0567	0.5048		-
rs191239443	19:19346158	A/C	NCAN	intron	0.885	0.96223	0.0540	0.4759		-
rs2188883	19:19334580	A/C	NCAN	intron	0.911	0.97853	0.0194	0.2635		7
rs2228600	19:19345802	T/C	NCAN	coding-synon	0.967	1.04175	0.0302	0.1748		5
rs2228603	19:19329924	T/C	NCAN	missense	0.921	0.98748	0.0203	0.5327		5
rs2238672	19:19335083	A/G	NCAN	intron	0.925	0.98079	0.0171	0.2564		4
rs2238673	19:19335307	A/G	NCAN	intron	0.901	0.98216	0.0251	0.4747		4
rs2238674	19:19335751	T/C	NCAN	intron	0.932	1.04645	0.0311	0.1451		2b
rs2238675	19:19336608	T/C	NCAN	intron	0.912	0.98975	0.0165	0.5315		5
rs2313915	19:19348311	A/T	NCAN	intron	0.606	0.98482	0.0223	0.4925		6
rs28393849	19:19349917	A/G	NCAN	intron	0.944	1.04718	0.0289	0.1103		5
rs28409009	19:19340265	A/G	NCAN	intron	0.946	1.04634	0.0286	0.1132		5
rs28446016	19:19340407	A/C	NCAN	intron	0.953	1.04509	0.0286	0.1241		5
rs28508263	19:19340218	A/G	NCAN	intron	0.942	0.95772	0.0286	0.1307		5
rs28510494	19:19341856	A/T	NCAN	intron	0.952	1.04498	0.0287	0.1243		5
rs28541794	19:19349971	A/G	NCAN	intron	0.944	0.95495	0.0289	0.1105		5
rs28628330	19:19350335	T/C	NCAN	intron	0.879	0.94630	0.0282	0.05009		2b
rs28838696	19:19347301	T/C	NCAN	intron	0.947	0.95590	0.0287	0.1163		6
rs34099325	19:19354627	T/G	NCAN	intron	0.692	0.99750	0.0359	0.9441		6
rs34346921	19:19334282	A/T	NCAN	intron	0.708	0.96870	0.0247	0.1975		6
rs34673002	19:19344525	T/C	NCAN	intron	0.969	1.04154	0.0301	0.1762		5
rs35583425	19:19353764	A/C	NCAN	intron	0.934	1.04269	0.0312	0.1794		6
rs45520038	19:19348998	A/G	NCAN	intron	0.721	0.92979	0.0525	0.1657		5
rs4808187	19:19330213	A/C	NCAN	intron	0.933	0.99005	0.0191	0.6007		5
rs4808928	19:19331847	A/G	NCAN	intron	0.830	1.08828	0.0230	0.0002385		7
rs4808931	19:19358672	A/C	NCAN	intron	0.992	0.94129	0.0120	4.98E-7		6
rs4808932	19:19358819	T/C	NCAN	intron	1.000	1.05993	0.0144	0.00005346		7
rs60553431	19:19325572	A/T	NCAN	intron,near-gene-5	0.646	1.01207	0.0176	0.4962		4
rs62135543	19:19324806	C/G	NCAN	intron	0.817	0.98216	0.0142	0.2036		3a
rs62135547	19:19351968	A/G	NCAN	intron	0.756	0.95705	0.0138	0.001451		6
rs7250569	19:19324443	A/G	NCAN	intron	0.936	0.99452	0.0167	0.7398		5
rs72999016	19:19350103	A/G	NCAN	intron	0.900	1.05792	0.0159	0.0003883		2b
rs73922843	19:19351761	T/C	NCAN	intron	0.958	1.04362	0.0305	0.1619		7
rs75072017	19:19344059	A/G	NCAN	intron	0.969	0.96012	0.0301	0.1762		6
rs75235904	19:19353979	T/G	NCAN	intron	0.782	0.90992	0.0224	0.00002469		7
rs77720510	19:19330832	T/C	NCAN	intron	0.931	0.99114	0.0191	0.6423		7
rs77927505	19:19347367	A/G	NCAN	intron	0.857	1.08296	0.0228	0.0004703		7
rs79396655	19:19355160	T/C	NCAN	intron	0.812	0.98659	0.0344	0.6944		7
rs79446171	19:19331717	A/G	NCAN	intron	0.925	1.01898	0.0196	0.3352		6
rs80290080	19:19324258	T/C	NCAN	intron	0.929	0.99452	0.0238	0.8181		5
rs80306943	19:19351843	A/G	NCAN	intron	0.953	1.04091	0.0309	0.1952		6
rs8102111	19:19332331	T/C	NCAN	intron	0.915	0.97961	0.0201	0.3045		7
rs8108777	19:19359058	A/C	NCAN	intron	1.000	1.06003	0.0144	0.00005334		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information