MSL2

Basic Information

Gene Symbol	MSL2
Entrez Id	55167
Position	chr3:135867760..135914688
Description	male-specific lethal 2 homolog (Drosophila)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10222451	3:135877413	C/G	MSL2	intron	0.998	1.01979	0.0122	0.1087		6
rs10935178	3:135893295	A/G	MSL2	intron	0.989	0.97249	0.0232	0.2287		6
rs10935179	3:135908786	T/G	MSL2	intron	0.912	0.98324	0.0356	0.6344		5
rs111247900	3:135907212	A/G	MSL2	intron	0.984	1.03717	0.0224	0.1029		7
rs111314336	3:135888092	T/G	MSL2	intron	0.709	0.96060	0.0143	0.004809		6
rs112490075	3:135873966	A/G	MSL2	intron	0.996	1.03531	0.0222	0.1169		7
rs113021516	3:135874294	C/G	MSL2	intron	0.993	1.02798	0.0114	0.01538		7
rs113587652	3:135882530	A/T	MSL2	intron	0.902	1.02368	0.0193	0.2259		5
rs114737552	3:135904235	T/C	MSL2	intron	0.912	1.04645	0.0327	0.1644		7
rs115542553	3:135912823	T/C	MSL2	intron	0.876	1.08502	0.0614	0.1842		4
rs115786928	3:135910556	A/G	MSL2	intron	0.602	1.03884	0.0614	0.5345		5
rs115976517	3:135902903	A/T	MSL2	intron	0.820	1.04477	0.0163	0.007185		7
rs13065565	3:135889651	T/C	MSL2	intron	0.936	0.94045	0.0193	0.001442		6
rs13068210	3:135905546	T/G	MSL2	intron	0.998	0.98010	0.0122	0.09971		5
rs13081671	3:135876549	T/C	MSL2	intron	0.998	1.02092	0.0121	0.08667		6
rs13321220	3:135885205	A/G	MSL2	intron	0.998	1.02030	0.0122	0.09929		5
rs138365415	3:135899602	A/G	MSL2	intron	0.709	1.01096	0.0302	0.7176		-
rs141390726	3:135882569	A/C	MSL2	intron	0.835	1.03500	0.0421	0.4135		-
rs141544755	3:135899630	A/G	MSL2	intron	0.720	1.01066	0.0141	0.452		-
rs143800624	3:135904814	T/C	MSL2	intron	0.671	1.05001	0.0452	0.2804		-
rs144265877	3:135902904	A/G	MSL2	intron	0.820	1.04509	0.0163	0.006784		-
rs144469404	3:135884272	A/G	MSL2	intron	0.854	0.96233	0.0390	0.3246		-
rs150612222	3:135910541	A/G	MSL2	intron	0.955	0.96310	0.0485	0.4382		-
rs181605755	3:135888641	T/C	MSL2	intron	0.795	1.02337	0.0481	0.6314		-
rs186316962	3:135869205	A/T	MSL2	untranslated-3	0.696	1.11539	0.0512	0.03286		-
rs189448565	3:135878402	C/G	MSL2	intron	0.698	0.93323	0.0412	0.09328		-
rs191838024	3:135877070	T/C	MSL2	intron	0.862	0.89754	0.0456	0.01785		-
rs192188252	3:135899626	A/G	MSL2	intron	0.681	1.02378	0.0167	0.1593		-
rs28519617	3:135874930	T/G	MSL2	intron	0.998	0.98059	0.0122	0.1088		7
rs28535121	3:135892798	T/C	MSL2	intron	0.999	0.97971	0.0122	0.09306		5
rs28669017	3:135874932	T/G	MSL2	intron	0.998	0.98059	0.0122	0.1088		7
rs35352346	3:135881488	A/G	MSL2	intron	0.997	1.02163	0.0121	0.07714		7
rs35837273	3:135878634	T/C	MSL2	intron	0.986	0.99980	0.0146	0.9906		6
rs36060212	3:135885163	A/G	MSL2	intron	0.979	1.00080	0.0167	0.9631		5
rs59747718	3:135875379	A/T	MSL2	intron	0.998	1.03345	0.0221	0.1358		6
rs61791755	3:135878522	T/C	MSL2	intron	0.753	0.89306	0.0540	0.03624		7
rs61791757	3:135905325	A/G	MSL2	intron	0.989	1.05190	0.0127	0.00007153		2b
rs6439628	3:135899650	A/G	MSL2	intron	0.729	0.97472	0.0126	0.04294		6
rs6439629	3:135901270	A/G	MSL2	intron	0.995	1.02173	0.0121	0.07616		5
rs6762209	3:135891736	T/C	MSL2	intron	0.927	0.94148	0.0180	0.0008038		7
rs6776845	3:135899658	A/G	MSL2	intron	0.754	0.97550	0.0126	0.04806		6
rs6779146	3:135907213	T/C	MSL2	intron	0.989	0.95085	0.0127	0.00007526		7
rs73222236	3:135888642	A/G	MSL2	intron	0.984	0.97404	0.0114	0.02119		7
rs75439229	3:135886948	T/C	MSL2	intron	0.917	0.98738	0.0273	0.6418		7
rs78494777	3:135906401	A/G	MSL2	intron	0.985	0.96580	0.0222	0.1179		5
rs9647335	3:135880410	A/T	MSL2	intron	0.957	0.94412	0.0141	0.00004805		4
rs9822771	3:135915822	A/C	MSL2	intron,near-gene-5	0.860	1.06428	0.0256	0.01494		4
rs9836446	3:135889931	A/T	MSL2	intron	0.966	0.95476	0.0183	0.0117		4
rs9841321	3:135896524	A/C	MSL2	intron	0.781	1.06631	0.0156	0.00003693		6
rs9845457	3:135914476	A/G	MSL2	intron,near-gene-5,untranslated-5	0.984	0.93725	0.0110	3.319E-9		4
rs9845788	3:135914715	A/G	MSL2	intron,near-gene-5	0.901	0.94544	0.0112	6.039E-7		2b
rs9865841	3:135876125	A/G	MSL2	intron	0.966	1.05317	0.0129	0.0000621		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information