LIN28B

Basic Information

Gene Symbol	LIN28B
Entrez Id	389421
Position	chr6:105404923..105531206
Description	lin-28 homolog B
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10457125	6:105485803	T/C	LIN28B	intron	0.904	1.03666	0.0194	0.0644		7
rs11156432	6:105440616	A/C	LIN28B	intron	0.794	0.99481	0.0145	0.7211		6
rs112252708	6:105462201	A/T	LIN28B	intron	0.992	1.05117	0.0183	0.00631		6
rs113798189	6:105525639	A/G	LIN28B	intron	0.758	1.01076	0.0363	0.7685		5
rs113803410	6:105441965	T/C	LIN28B	intron	0.601	1.09428	0.0592	0.1281		7
rs113953804	6:105505291	T/C	LIN28B	intron	0.758	1.01990	0.0358	0.5823		5
rs116896475	6:105446339	A/T	LIN28B	intron	0.747	1.01390	0.0254	0.5866		6
rs117435571	6:105431751	A/G	LIN28B	intron	0.798	1.03583	0.0392	0.369		7
rs117456945	6:105455874	A/G	LIN28B	intron	0.884	1.04144	0.0442	0.3589		5
rs1203470	6:105500763	T/G	LIN28B	intron	0.982	0.99283	0.0149	0.6294		7
rs12193730	6:105411769	A/G	LIN28B	intron	0.934	1.04530	0.0242	0.06655		7
rs12194974	6:105404198	A/G	LIN28B	intron,near-gene-5	0.840	0.98787	0.0175	0.4872		4
rs12212292	6:105426944	A/G	LIN28B	intron	0.832	1.00793	0.0177	0.6569		7
rs12215957	6:105404513	A/G	LIN28B	intron,near-gene-5	0.896	1.04362	0.0275	0.1194		6
rs12523843	6:105501800	A/G	LIN28B	intron	0.901	1.03200	0.0207	0.1278		7
rs13211658	6:105524489	T/G	LIN28B	intron	0.936	0.97902	0.0111	0.05683		2b
rs1322417	6:105447195	A/G	LIN28B	intron	0.960	1.02214	0.0129	0.0889		6
rs13362606	6:105414657	T/C	LIN28B	intron	0.755	1.02286	0.0489	0.6443		7
rs139025905	6:105462351	T/C	LIN28B	intron	0.734	0.99342	0.0278	0.8114		-
rs142010354	6:105426024	T/C	LIN28B	intron	0.626	1.08264	0.0408	0.05175		-
rs142239107	6:105508872	A/T	LIN28B	intron	0.718	0.97006	0.0693	0.6613		-
rs142491584	6:105404020	C/G	LIN28B	intron,near-gene-5	0.838	0.99134	0.0354	0.8067		-
rs142906066	6:105501880	A/G	LIN28B	intron	0.618	1.01258	0.0357	0.7264		-
rs143329176	6:105472069	A/G	LIN28B	intron	0.739	0.98728	0.0461	0.7815		-
rs143753925	6:105491667	C/G	LIN28B	intron	0.758	0.98030	0.0357	0.5772		-
rs144168965	6:105444453	A/T	LIN28B	intron	0.892	0.98472	0.0525	0.7691		-
rs144550293	6:105460755	A/T	LIN28B	intron	0.896	0.96464	0.0567	0.5253		-
rs145804713	6:105451267	A/G	LIN28B	intron	0.711	1.05159	0.0776	0.5163		-
rs148763560	6:105485145	A/G	LIN28B	intron	0.703	0.94007	0.0697	0.3759		-
rs149317637	6:105433549	T/G	LIN28B	intron	0.858	1.02860	0.0450	0.5308		-
rs149862383	6:105451105	A/G	LIN28B	intron	0.639	0.93090	0.0432	0.097		-
rs160593	6:105466332	A/G	LIN28B	intron	0.983	0.94847	0.0107	7.97E-7		7
rs160595	6:105493055	A/G	LIN28B	intron	0.986	1.00371	0.0150	0.8053		7
rs160596	6:105492737	A/G	LIN28B	intron	0.984	1.00441	0.0150	0.7672		7
rs160597	6:105492727	T/G	LIN28B	intron	0.984	1.00441	0.0150	0.7673		7
rs160598	6:105491858	A/G	LIN28B	intron	0.984	1.00662	0.0150	0.6587		7
rs160600	6:105491263	A/G	LIN28B	intron	0.917	1.02634	0.0112	0.02042		7
rs160601	6:105490144	A/T	LIN28B	intron	0.635	0.98699	0.0168	0.4339		5
rs167539	6:105410048	A/C	LIN28B	intron	1.000	0.96223	0.0111	0.0005075		7
rs17065417	6:105406274	A/C	LIN28B	intron	0.992	0.95514	0.0183	0.01202		5
rs1744206	6:105423931	C/G	LIN28B	intron	0.999	0.94942	0.0106	1.044E-6		6
rs1765934	6:105499084	A/G	LIN28B	intron	0.897	0.97550	0.0113	0.02801		7
rs184244802	6:105445049	A/G	LIN28B	intron	0.654	1.12446	0.0470	0.01264		-
rs184263937	6:105433247	A/C	LIN28B	intron	0.755	0.83661	0.0653	0.006265		-
rs185218275	6:105439354	A/G	LIN28B	intron	0.892	0.96050	0.0177	0.02294		-
rs185776166	6:105439552	A/G	LIN28B	intron	0.668	1.04896	0.0570	0.4015		-
rs186599787	6:105519807	A/C	LIN28B	intron	0.755	0.96618	0.0611	0.5735		-
rs187150974	6:105471467	A/T	LIN28B	intron	0.690	1.05548	0.0127	0.00002071		-
rs187165920	6:105439948	A/T	LIN28B	intron	0.787	0.98275	0.0557	0.7544		-
rs188162353	6:105441989	T/C	LIN28B	intron	0.717	1.07875	0.0556	0.1726		-
rs188823083	6:105408320	T/G	LIN28B	intron	0.857	1.03521	0.0433	0.425		-
rs189070658	6:105449978	T/C	LIN28B	intron	0.755	1.02255	0.0602	0.711		-
rs189604012	6:105445073	A/G	LIN28B	intron	0.885	1.04123	0.0442	0.3603		-
rs189826909	6:105516323	A/T	LIN28B	intron	0.656	1.03469	0.0488	0.4849		-
rs189976303	6:105439358	T/C	LIN28B	intron	0.881	0.97375	0.0205	0.1945		-
rs191135	6:105464940	T/C	LIN28B	intron	0.973	1.04196	0.0111	0.0002284		6
rs191301653	6:105471510	A/G	LIN28B	intron	0.666	1.05570	0.0511	0.288		-
rs2057391	6:105478927	A/C	LIN28B	intron	1.000	1.01501	0.0137	0.2754		6
rs2181191	6:105441888	A/G	LIN28B	intron	0.997	1.05211	0.0106	1.767E-6		6
rs2181192	6:105442316	A/C	LIN28B	intron	1.000	0.96300	0.0111	0.0006532		7
rs2181193	6:105442327	A/T	LIN28B	intron	1.000	0.96291	0.0111	0.0006482		6
rs2211010	6:105522111	T/C	LIN28B	intron	0.929	0.98089	0.0112	0.08497		7
rs221608	6:105498067	C/G	LIN28B	intron	0.973	0.99700	0.0150	0.84		7
rs221609	6:105497934	T/G	LIN28B	intron	0.788	1.00120	0.0143	0.9327		7
rs221612	6:105497018	C/G	LIN28B	intron	0.905	1.02450	0.0113	0.03172		6
rs221613	6:105496727	T/C	LIN28B	intron	0.784	1.00371	0.0144	0.796		7
rs221614	6:105496155	A/G	LIN28B	intron	0.962	0.99910	0.0150	0.9522		6
rs221615	6:105483327	A/G	LIN28B	intron	0.865	1.04624	0.0132	0.000619		2b
rs221616	6:105480694	A/T	LIN28B	intron	0.834	1.03749	0.0168	0.0282		6
rs221617	6:105475254	T/G	LIN28B	intron	0.919	1.05475	0.0111	1.573E-6		6
rs221628	6:105512179	A/G	LIN28B	intron	0.991	1.00733	0.0149	0.6266		7
rs221630	6:105513570	T/C	LIN28B	intron	0.908	1.04592	0.0249	0.07111		7
rs221631	6:105513720	A/G	LIN28B	intron	0.985	0.99213	0.0151	0.602		7
rs221632	6:105517445	A/T	LIN28B	intron	0.711	0.96735	0.0178	0.06204		6
rs221633	6:105519194	C/G	LIN28B	intron	0.985	0.99094	0.0151	0.548		6
rs221635	6:105529674	T/C	LIN28B	untranslated-3	0.976	0.99173	0.0153	0.5872		5
rs221636	6:105529964	A/T	LIN28B	untranslated-3	0.972	0.99561	0.0154	0.7741		5
rs314260	6:105457186	T/G	LIN28B	intron	0.996	1.05359	0.0106	9.263E-7		6
rs314261	6:105453417	A/C	LIN28B	intron	0.999	1.05443	0.0106	6.015E-7		7
rs314266	6:105421317	T/C	LIN28B	intron	0.996	0.94999	0.0106	1.427E-6		7
rs314267	6:105419990	T/C	LIN28B	intron	0.993	1.03915	0.0111	0.0005353		6
rs314268	6:105417978	A/G	LIN28B	intron	1.000	0.96156	0.0111	0.000393		5
rs314269	6:105415698	T/C	LIN28B	intron	0.997	0.94952	0.0106	1.084E-6		5
rs314270	6:105462876	T/C	LIN28B	intron	0.997	1.05485	0.0106	5.131E-7		6
rs314271	6:105462105	T/C	LIN28B	intron	0.998	1.03956	0.0111	0.000465		7
rs314272	6:105462004	A/G	LIN28B	intron	0.998	0.94781	0.0106	4.602E-7		7
rs314273	6:105461882	T/G	LIN28B	intron	0.996	1.03946	0.0111	0.000489		6
rs314274	6:105412932	A/C	LIN28B	intron	0.999	1.03967	0.0111	0.0004515		6
rs314275	6:105408966	T/C	LIN28B	intron	1.000	1.03904	0.0111	0.0005532		6
rs314276	6:105407999	A/C	LIN28B	intron	1.000	1.03915	0.0111	0.000518		6
rs314277	6:105407662	A/C	LIN28B	intron	0.963	1.04833	0.0152	0.001927		6
rs314282	6:105439840	A/G	LIN28B	intron	0.980	0.96146	0.0106	0.0002212		7
rs314283	6:105439336	T/C	LIN28B	intron	0.890	1.04781	0.0112	0.00002942		7
rs314284	6:105437570	C/G	LIN28B	intron	0.998	0.94971	0.0106	1.184E-6		7
rs314286	6:105436053	T/C	LIN28B	intron	1.000	0.96368	0.0111	0.0008444		7
rs314287	6:105434661	A/G	LIN28B	intron	0.992	1.04383	0.0106	0.00004869		5
rs314288	6:105434078	T/C	LIN28B	intron	0.924	1.05380	0.0169	0.001974		7
rs314289	6:105430934	T/C	LIN28B	intron	0.999	0.94980	0.0106	1.22E-6		7
rs314290	6:105426994	A/G	LIN28B	intron	1.000	1.03935	0.0111	0.0004978		6
rs314291	6:105424901	T/C	LIN28B	intron	0.999	0.95028	0.0106	1.636E-6		7
rs35025363	6:105523309	T/C	LIN28B	intron	0.760	0.97404	0.0368	0.4748		7
rs364663	6:105443189	A/T	LIN28B	intron	0.999	0.94847	0.0106	6.407E-7		6
rs364758	6:105502656	A/C	LIN28B	intron	0.986	0.99253	0.0149	0.6135		7
rs4145418	6:105529785	A/C	LIN28B	untranslated-3	0.893	0.98787	0.0147	0.4049		5
rs423366	6:105519249	A/G	LIN28B	intron	0.986	1.00975	0.0150	0.5178		7
rs436460	6:105519252	A/G	LIN28B	intron	0.986	1.00975	0.0150	0.518		7
rs4945714	6:105425731	A/G	LIN28B	intron	0.851	0.99980	0.0206	0.9928		7
rs4946652	6:105423829	T/C	LIN28B	intron	0.998	1.05317	0.0106	1.122E-6		6
rs59022653	6:105472013	A/G	LIN28B	intron	0.950	0.96291	0.0241	0.1172		7
rs59114387	6:105471496	A/T	LIN28B	intron	0.703	1.03293	0.0293	0.2679		6
rs62419609	6:105429511	T/C	LIN28B	intron	0.800	1.04707	0.0263	0.08031		7
rs62419619	6:105495069	A/C	LIN28B	intron	0.903	0.97122	0.0208	0.1599		7
rs62419623	6:105502549	A/G	LIN28B	intron	0.900	0.96928	0.0207	0.1303		7
rs62419624	6:105505969	T/C	LIN28B	intron	0.900	1.03190	0.0207	0.13		6
rs62419627	6:105516453	T/C	LIN28B	intron	0.876	1.02932	0.0210	0.17		4
rs6900292	6:105413370	T/C	LIN28B	intron	1.000	1.03956	0.0111	0.000453		7
rs6902142	6:105479558	A/G	LIN28B	intron	0.978	0.98531	0.0139	0.2861		7
rs71572245	6:105518902	T/C	LIN28B	intron	0.848	0.98255	0.0553	0.7503		5
rs73521962	6:105504176	A/G	LIN28B	intron	0.899	0.97249	0.0208	0.1798		6
rs74501403	6:105434907	A/G	LIN28B	intron	0.991	0.95409	0.0183	0.0101		6
rs74711615	6:105436993	A/G	LIN28B	intron	0.987	1.05222	0.0185	0.005774		6
rs74816231	6:105489184	T/C	LIN28B	intron	0.930	1.04164	0.0195	0.0369		6
rs75086931	6:105517980	A/G	LIN28B	intron	0.834	1.07702	0.0382	0.05188		5
rs75894113	6:105431184	A/G	LIN28B	intron	0.920	1.05401	0.0231	0.02247		7
rs75916436	6:105469476	T/C	LIN28B	intron	0.988	1.05096	0.0183	0.006688		5
rs76187241	6:105427103	A/T	LIN28B	intron	0.809	1.00230	0.0544	0.966		6
rs76236717	6:105406324	T/C	LIN28B	intron	0.991	1.04791	0.0183	0.01049		7
rs76357217	6:105441404	T/G	LIN28B	intron	0.992	0.95256	0.0183	0.007786		6
rs76964000	6:105469367	A/G	LIN28B	intron	0.988	0.95142	0.0183	0.006619		5
rs77271353	6:105430503	A/T	LIN28B	intron	0.991	0.95390	0.0183	0.009893		7
rs77898951	6:105442815	T/C	LIN28B	intron	0.855	0.96783	0.0436	0.4531		7
rs78400456	6:105453867	T/C	LIN28B	intron	0.861	0.98344	0.0358	0.6401		6
rs78956178	6:105489209	T/G	LIN28B	intron	0.881	0.97297	0.0264	0.2987		7
rs79145082	6:105485892	T/C	LIN28B	intron	0.773	1.01908	0.0425	0.6566		6
rs79626986	6:105419286	A/T	LIN28B	intron	0.992	1.04791	0.0183	0.01052		7
rs79727058	6:105432417	T/C	LIN28B	intron	0.708	1.01248	0.0644	0.8478		7
rs79840416	6:105444115	T/C	LIN28B	intron	0.992	0.95256	0.0183	0.007801		2b
rs80284847	6:105415911	A/G	LIN28B	intron	0.992	1.04896	0.0183	0.008835		6
rs9322825	6:105480607	A/T	LIN28B	intron	0.933	0.95877	0.0186	0.02352		6
rs9322826	6:105480725	T/C	LIN28B	intron	0.945	0.94999	0.0188	0.006521		7
rs9322827	6:105480816	A/G	LIN28B	intron	0.943	1.05264	0.0189	0.006558		6
rs9377684	6:105445364	A/G	LIN28B	intron	0.962	0.97893	0.0135	0.1137		6
rs9386435	6:105471503	A/T	LIN28B	intron	0.704	1.01623	0.0153	0.293		6
rs9391261	6:105471480	A/T	LIN28B	intron	0.802	0.97015	0.0139	0.02936		6
rs9391264	6:105506912	T/C	LIN28B	intron	0.871	1.02143	0.0158	0.1799		5
rs9399902	6:105452029	A/G	LIN28B	intron	0.959	0.97834	0.0129	0.08915		6
rs9404592	6:105461885	A/G	LIN28B	intron	0.955	1.02327	0.0136	0.09028		6
rs9404593	6:105493422	A/T	LIN28B	intron	0.910	0.97863	0.0147	0.1415		5
rs9404597	6:105520630	A/G	LIN28B	intron	0.944	1.01572	0.0146	0.2869		3a
rs9500017	6:105475109	T/C	LIN28B	intron	0.980	1.05001	0.0184	0.008115		7
rs9500018	6:105480449	A/T	LIN28B	intron	0.949	0.95056	0.0188	0.006918		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information