HTR5A

Basic Information

Gene Symbol	HTR5A
Entrez Id	3361
Position	chr7:154862546..154877459
Description	5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10216194	7:154868052	A/T	HTR5A	intron	0.988	1.03645	0.0112	0.001351		6
rs1079515	7:154866259	A/T	HTR5A	intron	0.988	0.96551	0.0111	0.001632		5
rs117136087	7:154872971	C/G	HTR5A	intron	0.855	1.05169	0.0650	0.4384		6
rs11772359	7:154870402	A/C	HTR5A	intron	0.975	0.97249	0.0116	0.01632		6
rs117801242	7:154869554	A/G	HTR5A	intron	0.931	1.01461	0.0327	0.6568		7
rs118170779	7:154872953	C/G	HTR5A	intron	0.695	1.00995	0.0611	0.8715		7
rs12155270	7:154869158	A/C	HTR5A	intron	0.709	0.97775	0.0427	0.5981		6
rs12539876	7:154868044	T/C	HTR5A	intron	0.997	0.96281	0.0115	0.000939		7
rs1371817	7:154877267	A/G	HTR5A	untranslated-3	1.010	1.03056	0.0110	0.006326		7
rs1371818	7:154877352	T/C	HTR5A	untranslated-3	1.000	1.01491	0.0246	0.5488		7
rs145997880	7:154875275	A/G	HTR5A	intron	0.898	0.98324	0.0480	0.7241		-
rs1631327	7:154876689	T/C	HTR5A	untranslated-3	0.999	1.03769	0.0115	0.001356		5
rs1657268	7:154874614	T/C	HTR5A	intron	0.998	0.97132	0.0109	0.00754		7
rs1657269	7:154874996	T/C	HTR5A	intron	0.996	1.03780	0.0115	0.001317		7
rs1657271	7:154879448	A/G	HTR5A	near-gene-3	0.999	0.96493	0.0112	0.001379		7
rs1730208	7:154875780	A/G	HTR5A	intron	0.999	1.03800	0.0115	0.001229		7
rs1730209	7:154876991	T/C	HTR5A	untranslated-3	1.000	1.03666	0.0115	0.00178		5
rs1822085	7:154879236	A/C	HTR5A	near-gene-3	0.999	1.03728	0.0115	0.001535		7
rs1946915	7:154876386	T/C	HTR5A	untranslated-3	0.914	1.02000	0.0240	0.4111		7
rs2241859	7:154863467	T/G	HTR5A	intron,near-gene-5	0.999	1.03614	0.0115	0.00196		5
rs2463906	7:154870575	T/C	HTR5A	intron	0.988	1.00260	0.0115	0.8185		7
rs2581831	7:154876724	T/C	HTR5A	untranslated-3	0.999	0.98246	0.0250	0.4787		5
rs2581837	7:154868220	A/C	HTR5A	intron	0.987	0.97113	0.0109	0.007162		7
rs2581838	7:154868166	T/G	HTR5A	intron	0.989	0.96522	0.0111	0.001496		6
rs2581841	7:154863839	T/C	HTR5A	intron,near-gene-5	0.997	0.96551	0.0114	0.00212		4
rs2698495	7:154864769	T/G	HTR5A	intron,near-gene-5	0.997	0.96397	0.0114	0.001339		5
rs2698512	7:154874572	A/G	HTR5A	intron	0.997	0.98393	0.0250	0.5172		6
rs2698513	7:154874917	A/T	HTR5A	intron	0.996	0.98138	0.0250	0.4523		6
rs34083819	7:154869081	T/G	HTR5A	intron	0.997	1.03780	0.0115	0.00124		6
rs35094950	7:154864659	T/C	HTR5A	intron,near-gene-5	0.997	1.03634	0.0115	0.001852		5
rs6597454	7:154871204	A/C	HTR5A	intron	0.988	0.96464	0.0112	0.001262		6
rs6597455	7:154871365	C/G	HTR5A	intron	0.988	0.96464	0.0112	0.001264		7
rs66867850	7:154868546	C/G	HTR5A	intron	0.997	0.96368	0.0115	0.001256		6
rs731107	7:154872803	T/C	HTR5A	intron	0.996	1.03842	0.0115	0.001007		7
rs74374398	7:154867032	A/G	HTR5A	intron	0.712	1.04154	0.0285	0.1531		7
rs76275803	7:154873670	A/G	HTR5A	intron	0.992	1.03562	0.0287	0.2233		7
rs76276913	7:154867112	A/G	HTR5A	intron	0.759	0.97142	0.0603	0.6309		7
rs77606733	7:154873037	T/G	HTR5A	intron	0.935	0.98511	0.0327	0.6461		7
rs78262275	7:154877381	A/G	HTR5A	untranslated-3	0.972	1.02061	0.0279	0.4655		6
rs980442	7:154876342	T/G	HTR5A	untranslated-3	0.998	0.98541	0.0247	0.5517		7
rs980443	7:154876385	A/T	HTR5A	untranslated-3	0.917	0.98138	0.0240	0.4337		7
rs9987009	7:154868225	A/C	HTR5A	intron	0.988	0.96483	0.0112	0.001337		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information