HTR3A

Basic Information

Gene Symbol	HTR3A
Entrez Id	3359
Position	chr11:113845797..113861035
Description	5-hydroxytryptamine (serotonin) receptor 3A, ionotropic
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10160548	11:113856681	T/G	HTR3A	intron	0.990	0.99422	0.0112	0.6052		7
rs10891611	11:113851413	T/C	HTR3A	intron	0.984	1.00854	0.0147	0.5635		7
rs11607240	11:113851853	T/C	HTR3A	intron	0.978	1.01928	0.0200	0.3401		5
rs118187155	11:113858427	T/C	HTR3A	intron	0.712	1.03977	0.0469	0.4052		7
rs12808576	11:113849429	T/C	HTR3A	intron	0.818	0.99551	0.0387	0.9072		5
rs137905731	11:113859464	T/C	HTR3A	intron	0.792	1.01633	0.0388	0.6765		-
rs145626210	11:113846421	T/C	HTR3A	intron,near-gene-5	0.800	1.01664	0.0387	0.6702		-
rs146987046	11:113852492	T/C	HTR3A	intron	0.730	1.01278	0.0340	0.7088		-
rs148753082	11:113851632	A/G	HTR3A	intron	0.723	0.90946	0.0600	0.1135		-
rs17543605	11:113859567	C/G	HTR3A	intron	0.990	1.03231	0.0231	0.1681		7
rs1985242	11:113848273	A/T	HTR3A	intron,untranslated-5	0.980	1.00823	0.0113	0.4682		5
rs2276302	11:113850140	A/G	HTR3A	intron	0.988	0.99243	0.0116	0.5113		2b
rs2276303	11:113852199	A/G	HTR3A	intron	0.945	1.01949	0.0389	0.6207		6
rs2846632	11:113856539	T/C	HTR3A	intron	0.988	1.03179	0.0231	0.1752		7
rs33940208	11:113846077	T/C	HTR3A	coding-synon,ncRNA	0.809	1.02030	0.0365	0.5817		4
rs34327364	11:113856768	A/G	HTR3A	coding-synon,intron	0.798	1.01877	0.0393	0.6363		7
rs35448518	11:113854096	T/C	HTR3A	intron	0.953	1.00230	0.0174	0.8965		5
rs4020469	11:113859258	A/G	HTR3A	intron	0.982	1.00000	0.0106	0.9996		6
rs58143450	11:113849004	A/G	HTR3A	intron	0.938	1.02480	0.0391	0.5315		5
rs61905785	11:113850006	A/C	HTR3A	intron	0.978	0.98206	0.0200	0.3647		3a
rs73001860	11:113851205	A/G	HTR3A	intron	0.903	0.94139	0.0217	0.005464		7
rs73011601	11:113861321	T/C	HTR3A	near-gene-3	0.990	1.03241	0.0231	0.1667		5
rs73556695	11:113853456	A/T	HTR3A	intron	0.956	0.97385	0.0412	0.5211		5
rs75833556	11:113858089	T/C	HTR3A	intron	0.913	1.02819	0.0343	0.4176		5
rs76149217	11:113847318	T/C	HTR3A	intron,near-gene-5	0.892	1.01674	0.0173	0.3375		7
rs76303657	11:113853411	A/C	HTR3A	intron	0.773	1.02778	0.0478	0.566		5
rs76882290	11:113858052	T/G	HTR3A	intron	0.770	1.02932	0.0479	0.5463		5
rs77001018	11:113844504	A/G	HTR3A	near-gene-5	0.975	1.03066	0.0225	0.1785		7
rs78602608	11:113851571	A/G	HTR3A	intron	0.979	1.02562	0.0207	0.2198		5
rs79894062	11:113853527	A/G	HTR3A	intron	0.797	0.93445	0.0388	0.08097		5
rs909411	11:113854282	A/G	HTR3A	intron	0.985	1.00854	0.0127	0.5053		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information