GPX6

Basic Information

Gene Symbol	GPX6
Entrez Id	257202
Position	chr6:732..5774
Description	glutathione peroxidase 6
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10428759	6:28477682	T/C	GPX6	intron	0.977	0.99461	0.0157	0.7287		5
rs114053137	6:28482200	T/C	GPX6	intron	0.716	1.04019	0.0369	0.2855		5
rs114283908	6:28485477	A/G	GPX6	near-gene-5	0.957	0.99671	0.0226	0.8833		7
rs115162998	6:28479668	C/G	GPX6	intron	0.877	0.93585	0.0650	0.3073		4
rs115381250	6:28480494	T/C	GPX6	intron	0.766	1.10340	0.0278	0.0003947		5
rs116523144	6:28483691	T/C	GPX6	near-gene-5	0.730	1.11227	0.0256	0.00003274		7
rs116641127	6:28482149	T/C	GPX6	intron	0.678	1.01440	0.0486	0.7687		5
rs12660763	6:28475977	A/G	GPX6	intron	0.981	1.00240	0.0166	0.8859		7
rs140266643	6:28479897	C/G	GPX6	intron	0.968	1.00290	0.0227	0.8969		-
rs144169853	6:28482408	A/G	GPX6	intron	0.929	0.99910	0.0587	0.988		-
rs144854876	6:28479767	C/G	GPX6	intron	0.738	1.02757	0.0362	0.4531		-
rs186403935	6:28479934	A/G	GPX6	intron	0.944	0.99302	0.0226	0.7575		-
rs192307420	6:28480802	C/G	GPX6	intron	0.978	1.08080	0.0593	0.1904		-
rs2071966	6:28473325	T/G	GPX6	intron	0.998	0.98965	0.0168	0.5356		4
rs34151610	6:28474855	A/G	GPX6	intron	0.888	1.02994	0.0324	0.3625		5
rs35403242	6:28477582	A/G	GPX6	intron	0.943	1.03376	0.0205	0.1059		7
rs35604709	6:28471297	A/G	GPX6	untranslated-3	0.956	1.03469	0.0203	0.09282		7
rs35783771	6:28477441	A/G	GPX6	intron	0.935	0.91293	0.0639	0.1543		6
rs35921765	6:28471560	A/C	GPX6	untranslated-3	0.998	0.98946	0.0168	0.5297		6
rs35996215	6:28476553	T/C	GPX6	intron	0.886	1.07444	0.0328	0.02886		5
rs4713166	6:28472656	T/C	GPX6	intron	0.997	1.01136	0.0171	0.5072		5
rs4713167	6:28477895	T/C	GPX6	intron	0.995	0.99820	0.0114	0.8774		7
rs9468385	6:28471612	T/C	GPX6	untranslated-3	0.997	1.01076	0.0165	0.5195		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information