GC

Basic Information

Gene Symbol	GC
Entrez Id	2638
Position	chr4:72607410..72671237
Description	group-specific component (vitamin D binding protein)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10024600	4:72668616	T/C	GC	intron	0.999	0.99025	0.0135	0.4654		6
rs111227171	4:72621052	A/G	GC	intron	0.851	1.07896	0.0336	0.02373		7
rs111978854	4:72642367	T/C	GC	intron	0.698	0.93100	0.0284	0.01198		7
rs113574864	4:72628003	T/C	GC	intron	0.973	1.03645	0.0237	0.1317		7
rs113876500	4:72666339	T/G	GC	intron	0.993	1.03541	0.0207	0.09347		7
rs114329148	4:72615286	A/G	GC	intron	0.838	0.99164	0.0498	0.8656		5
rs114585970	4:72643097	T/C	GC	intron	0.887	0.92247	0.0569	0.1565		7
rs114737000	4:72648939	A/G	GC	intron	0.757	1.04289	0.0442	0.3427		6
rs114835516	4:72664026	A/G	GC	intron	0.828	0.96889	0.0420	0.4517		7
rs114932951	4:72631184	T/C	GC	coding-synon	0.723	0.89413	0.0579	0.05326		5
rs115103883	4:72621395	T/C	GC	intron	0.858	1.03128	0.0389	0.4278		6
rs115366859	4:72642605	T/C	GC	intron	0.821	1.01481	0.0541	0.7866		7
rs115946499	4:72661907	T/C	GC	intron	0.907	0.99800	0.0163	0.9022		6
rs116534051	4:72627525	A/G	GC	intron	0.746	0.98797	0.0434	0.7804		7
rs116748421	4:72632759	T/C	GC	intron	0.725	0.99880	0.0347	0.9718		6
rs12640179	4:72612687	C/G	GC	intron	1.000	0.94677	0.0199	0.005896		5
rs12644050	4:72612911	T/C	GC	intron	1.000	0.94639	0.0199	0.005513		7
rs13142062	4:72610021	A/C	GC	intron	0.828	0.98482	0.0117	0.1909		6
rs13148277	4:72661762	T/C	GC	intron	0.992	1.00965	0.0133	0.4695		6
rs1352843	4:72642954	T/C	GC	intron	0.994	1.01238	0.0175	0.4818		7
rs1352844	4:72647749	T/C	GC	intron	0.998	0.99362	0.0165	0.6992		6
rs1352845	4:72647762	A/G	GC	intron	1.000	0.99302	0.0131	0.5896		6
rs1352846	4:72617775	A/G	GC	intron	0.991	0.99710	0.0118	0.8043		6
rs138541816	4:72613631	A/G	GC	intron	0.654	0.95066	0.0728	0.4872		-
rs139125797	4:72662491	A/G	GC	intron	0.984	1.03500	0.0208	0.09773		-
rs139868816	4:72621004	T/C	GC	intron	0.813	1.04446	0.0279	0.1188		-
rs140002632	4:72658267	T/G	GC	intron	0.998	1.00823	0.0165	0.6217		-
rs140763635	4:72660195	T/C	GC	intron	0.998	1.00813	0.0165	0.6237		-
rs141578537	4:72616495	A/G	GC	intron	0.617	1.09538	0.0772	0.2379		-
rs141618049	4:72660474	T/G	GC	intron	0.674	1.05432	0.0598	0.3769		-
rs142018801	4:72639444	A/G	GC	intron	0.706	0.84409	0.0702	0.0158		-
rs142811437	4:72648824	C/G	GC	intron	0.973	0.90692	0.0545	0.07328		-
rs144407047	4:72614768	A/C	GC	intron	0.718	0.93594	0.0381	0.08234		-
rs144616029	4:72660248	A/T	GC	intron	0.949	0.96368	0.0385	0.3366		-
rs144627635	4:72657952	T/C	GC	intron	0.998	0.99193	0.0165	0.6249		-
rs145479326	4:72658415	T/C	GC	intron	0.992	1.03593	0.0208	0.08891		-
rs148568110	4:72657716	T/C	GC	intron	0.991	1.03572	0.0208	0.09083		-
rs149002202	4:72634361	T/G	GC	intron	0.747	1.06535	0.0634	0.3176		-
rs149126698	4:72608321	T/C	GC	intron	0.651	0.94980	0.0730	0.4804		-
rs1491718	4:72641279	T/C	GC	intron	0.997	1.01278	0.0174	0.4672		6
rs150068505	4:72653392	A/T	GC	intron	0.835	1.05159	0.0462	0.2754		-
rs151012457	4:72659626	A/G	GC	intron	0.834	0.98442	0.0544	0.7728		-
rs16846943	4:72619996	A/C	GC	intron	0.989	0.99621	0.0202	0.8508		7
rs16847015	4:72638824	A/C	GC	intron	0.996	1.03759	0.0234	0.1159		5
rs16847028	4:72651525	A/G	GC	intron,near-gene-5	0.997	0.99193	0.0165	0.6222		7
rs16847031	4:72652957	A/G	GC	intron	0.992	1.03884	0.0209	0.06846		6
rs16847036	4:72654225	A/G	GC	intron	0.992	0.96541	0.0207	0.08942		7
rs16847039	4:72654267	T/C	GC	intron	0.998	1.00965	0.0135	0.4772		7
rs16847047	4:72655175	T/C	GC	intron	0.998	0.99203	0.0165	0.6304		5
rs16847050	4:72667331	T/C	GC	intron	0.998	0.99144	0.0165	0.6042		7
rs16847054	4:72668959	T/C	GC	intron	0.991	1.03572	0.0208	0.09115		6
rs17830803	4:72618985	C/G	GC	intron	0.987	0.98876	0.0221	0.6084		5
rs182901986	4:72646441	A/G	GC	intron	0.980	1.04331	0.0212	0.04601		-
rs185124845	4:72643767	A/C	GC	intron	0.605	1.09724	0.0626	0.1382		-
rs189770265	4:72660277	A/T	GC	intron	0.730	1.16766	0.0738	0.03572		-
rs191632154	4:72633525	T/C	GC	intron	0.704	0.98936	0.0653	0.8695		-
rs2070741	4:72607678	T/G	GC	intron	0.995	0.94686	0.0199	0.006086		6
rs2177922	4:72651624	A/G	GC	intron,near-gene-5	0.832	0.98738	0.0544	0.8156		7
rs221999	4:72649048	A/G	GC	intron	0.944	1.00662	0.0121	0.5862		6
rs222001	4:72625963	T/G	GC	intron	0.790	0.97278	0.0187	0.1402		7
rs222002	4:72626044	A/C	GC	intron	0.962	0.98936	0.0208	0.6087		6
rs222003	4:72626088	C/G	GC	intron	0.964	1.01086	0.0208	0.6024		6
rs222005	4:72626861	A/T	GC	intron	0.967	0.98413	0.0177	0.3663		7
rs222006	4:72626999	T/C	GC	intron	0.953	0.98501	0.0177	0.3915		7
rs222007	4:72628223	A/G	GC	intron	0.984	1.01552	0.0176	0.3811		6
rs222010	4:72631744	T/C	GC	intron	0.976	1.04352	0.0221	0.05347		4
rs222011	4:72631899	A/C	GC	intron	0.996	0.98580	0.0175	0.414		5
rs222014	4:72632931	T/C	GC	intron	0.999	0.98541	0.0174	0.3983		7
rs222017	4:72635512	A/T	GC	intron	1.000	0.98541	0.0174	0.3967		6
rs222026	4:72643760	A/T	GC	intron	0.959	1.00652	0.0143	0.6485		5
rs222029	4:72644962	A/G	GC	intron	0.984	0.99233	0.0142	0.5859		6
rs222035	4:72621674	T/G	GC	intron	0.981	1.01939	0.0108	0.07438		6
rs222040	4:72616932	A/G	GC	intron	0.993	0.98531	0.0107	0.1677		7
rs222042	4:72612616	A/G	GC	intron	0.992	0.98797	0.0222	0.585		5
rs222043	4:72611699	A/G	GC	intron	0.992	0.98837	0.0222	0.5991		5
rs222046	4:72610850	T/C	GC	intron	0.994	0.99035	0.0222	0.6632		6
rs222047	4:72610208	A/C	GC	intron	0.996	1.01867	0.0107	0.08523		6
rs2276461	4:72628969	A/G	GC	intron	0.958	1.03572	0.0235	0.1351		6
rs2282679	4:72608383	T/G	GC	intron	1.000	0.99730	0.0117	0.8148		7
rs2282680	4:72608364	T/C	GC	intron	1.000	1.00230	0.0117	0.8411		6
rs2298849	4:72648851	A/G	GC	intron	0.999	0.99293	0.0131	0.5864		6
rs2298850	4:72614267	C/G	GC	intron	0.993	1.00321	0.0119	0.7866		6
rs2365083	4:72660548	A/G	GC	intron	0.999	0.99045	0.0133	0.4691		7
rs28421841	4:72608632	A/G	GC	intron	0.678	0.97229	0.0457	0.5386		7
rs28459715	4:72646140	A/G	GC	intron	0.985	0.96802	0.0205	0.1125		7
rs28462324	4:72644604	A/G	GC	intron	0.667	1.01491	0.0426	0.7276		7
rs28761198	4:72663620	A/G	GC	intron	0.717	0.92700	0.0658	0.2496		7
rs4364228	4:72623347	A/G	GC	intron	0.988	0.99412	0.0202	0.7699		6
rs4519765	4:72659177	T/C	GC	intron	0.993	0.96493	0.0207	0.08519		6
rs4588	4:72618323	T/G	GC	intron,missense	0.997	1.00240	0.0117	0.8378		5
rs4694431	4:72634343	T/C	GC	intron	0.996	1.03780	0.0235	0.1139		5
rs4694432	4:72634383	A/G	GC	intron	0.996	0.96368	0.0235	0.1149		7
rs57962813	4:72647127	A/C	GC	intron	0.682	0.97716	0.0253	0.36		6
rs59241277	4:72641506	A/G	GC	intron	0.989	0.96454	0.0235	0.125		6
rs59431786	4:72660740	T/C	GC	intron	0.993	0.96532	0.0207	0.08885		5
rs59662561	4:72669491	C/G	GC	intron	0.993	1.03645	0.0207	0.08366		7
rs60335695	4:72664281	A/G	GC	intron	0.993	0.96493	0.0207	0.08484		7
rs60349934	4:72626488	T/C	GC	intron	0.939	0.95514	0.0201	0.02253		7
rs62302166	4:72639207	T/G	GC	intron	0.792	1.00210	0.0242	0.9316		6
rs62302167	4:72639282	T/C	GC	intron	0.943	0.99770	0.0121	0.8511		6
rs6446761	4:72621679	T/C	GC	intron	0.988	1.00431	0.0203	0.8311		6
rs66811958	4:72645806	A/G	GC	intron	0.983	1.03303	0.0205	0.1121		7
rs66917719	4:72663170	A/G	GC	intron	0.916	1.03842	0.0197	0.05609		7
rs67543584	4:72663276	T/C	GC	intron	0.984	0.96532	0.0207	0.08777		6
rs67573830	4:72633669	T/C	GC	intron	0.994	0.96397	0.0235	0.1186		7
rs6817912	4:72653705	T/C	GC	intron	0.992	1.03707	0.0207	0.07931		7
rs6845869	4:72612902	T/G	GC	intron	0.989	0.97210	0.0389	0.4671		7
rs6845925	4:72612975	A/T	GC	intron	0.988	1.02922	0.0388	0.4575		6
rs6857188	4:72625900	A/C	GC	intron	0.966	0.98896	0.0208	0.5924		7
rs705121	4:72615833	A/G	GC	intron	0.993	1.01450	0.0107	0.179		7
rs705125	4:72654877	T/G	GC	intron	0.999	0.99263	0.0131	0.5706		7
rs72607828	4:72632406	T/C	GC	intron	0.990	1.03738	0.0235	0.1189		6
rs72607829	4:72645286	A/G	GC	intron	0.974	1.03469	0.0237	0.1493		5
rs72607830	4:72655295	C/G	GC	intron	0.991	1.03572	0.0207	0.09082		5
rs73827383	4:72612234	A/G	GC	intron	0.961	1.02122	0.0364	0.5638		7
rs74500260	4:72663435	A/G	GC	intron	1.000	1.01025	0.0160	0.5216		7
rs74706296	4:72664972	T/C	GC	intron	0.808	0.98442	0.0189	0.408		7
rs75774690	4:72632642	T/C	GC	intron	0.734	1.02624	0.0310	0.4049		7
rs76781122	4:72669661	A/C	GC	intron,missense	0.966	1.02122	0.0344	0.5413		7
rs76803094	4:72620788	T/C	GC	coding-synon	0.655	1.04896	0.0431	0.2676		6
rs77317329	4:72668162	A/G	GC	intron	0.802	1.06386	0.0450	0.1688		6
rs78044121	4:72644297	A/G	GC	intron	0.990	1.01106	0.0175	0.5304		6
rs79444700	4:72620557	T/C	GC	intron	0.802	0.94308	0.0322	0.06874		6
rs842998	4:72627797	C/G	GC	intron	0.976	0.99074	0.0142	0.5104		6
rs842999	4:72611690	C/G	GC	intron	0.968	0.97804	0.0109	0.04169		5
rs843005	4:72616327	T/C	GC	intron	0.993	0.98531	0.0107	0.1681		7
rs843006	4:72656076	T/G	GC	intron	0.999	1.00924	0.0133	0.4886		6
rs843007	4:72656098	A/G	GC	intron	0.989	0.99124	0.0133	0.5082		7
rs843008	4:72656175	T/G	GC	intron	0.998	0.99015	0.0135	0.4646		7
rs843009	4:72656255	T/G	GC	intron	0.999	1.00975	0.0133	0.4655		6
rs843011	4:72658064	A/T	GC	intron	0.944	0.99770	0.0110	0.833		6
rs844806	4:72613792	T/C	GC	intron	0.992	1.01572	0.0108	0.147		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information