GABRG2

Basic Information

Gene Symbol	GABRG2
Entrez Id	2566
Position	chr5:161494648..161582545
Description	gamma-aminobutyric acid (GABA) A receptor, gamma 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10079477	5:161546821	T/C	GABRG2	intron	0.989	0.95849	0.0148	0.004222		7
rs10491328	5:161571731	T/G	GABRG2	intron	1.010	1.05866	0.0163	0.000462		7
rs10491329	5:161571700	A/G	GABRG2	intron	1.010	0.94715	0.0157	0.0005458		7
rs10491330	5:161549470	T/C	GABRG2	intron	0.868	0.98541	0.0234	0.5297		7
rs111830202	5:161574550	T/C	GABRG2	intron	0.934	0.95600	0.0247	0.06816		7
rs113824610	5:161568290	T/G	GABRG2	intron	0.949	0.95352	0.0160	0.002963		6
rs114078052	5:161527504	T/C	GABRG2	intron	0.694	0.96185	0.0659	0.5552		7
rs114259125	5:161562020	A/G	GABRG2	intron	0.684	0.94007	0.0507	0.2233		7
rs114370934	5:161502618	T/G	GABRG2	intron	0.798	1.02071	0.0467	0.6599		6
rs115084013	5:161555291	A/C	GABRG2	intron	0.857	1.03572	0.0561	0.5313		4
rs115288539	5:161503510	T/C	GABRG2	intron	0.794	0.92914	0.0319	0.02128		7
rs115296204	5:161533151	A/G	GABRG2	intron	0.820	0.88763	0.0565	0.03493		6
rs115577768	5:161506021	A/T	GABRG2	intron	0.901	0.98305	0.0215	0.4281		6
rs115629837	5:161507508	T/C	GABRG2	intron	0.873	1.01288	0.0484	0.7922		6
rs115659085	5:161506022	T/C	GABRG2	intron	0.892	1.01755	0.0215	0.4168		6
rs115673528	5:161514711	A/G	GABRG2	intron	0.808	0.98167	0.0498	0.7095		7
rs116152603	5:161508099	T/G	GABRG2	intron	0.799	1.01765	0.0441	0.6913		7
rs116155059	5:161501261	T/C	GABRG2	intron	0.798	0.97463	0.0476	0.59		6
rs116187520	5:161526207	A/G	GABRG2	intron	0.873	0.98079	0.0332	0.5588		7
rs116339982	5:161514514	A/G	GABRG2	intron	0.874	0.96590	0.0294	0.238		6
rs116551283	5:161504950	A/G	GABRG2	intron	0.846	0.96977	0.0401	0.4432		6
rs116738536	5:161512021	A/G	GABRG2	intron	0.888	0.98876	0.0293	0.6995		7
rs11742028	5:161497050	T/C	GABRG2	intron	0.899	1.03056	0.0138	0.02917		7
rs12520992	5:161569430	A/C	GABRG2	intron	0.920	1.00955	0.0164	0.5628		7
rs13154832	5:161515020	T/C	GABRG2	intron	0.965	1.01990	0.0270	0.4652		7
rs13168345	5:161513581	A/G	GABRG2	intron	0.854	0.97736	0.0504	0.6505		7
rs13173675	5:161568643	T/C	GABRG2	intron	0.921	1.00955	0.0164	0.5605		6
rs13174392	5:161515120	A/T	GABRG2	intron	0.944	0.97609	0.0281	0.3896		7
rs13181691	5:161560518	C/G	GABRG2	intron	0.944	1.03097	0.0298	0.3057		6
rs138526713	5:161536336	A/T	GABRG2	intron	0.861	1.02378	0.0207	0.2565		-
rs139191298	5:161550680	A/G	GABRG2	intron	0.754	0.99372	0.0411	0.8779		-
rs145030721	5:161577753	A/G	GABRG2	intron	0.768	1.11193	0.0657	0.1065		-
rs145184886	5:161513731	T/C	GABRG2	intron	0.673	1.07208	0.0530	0.1895		-
rs146094757	5:161548876	T/C	GABRG2	intron	0.705	0.93183	0.0550	0.1986		-
rs146334876	5:161537532	A/G	GABRG2	intron	0.644	1.01207	0.0666	0.8566		-
rs147698555	5:161566216	T/C	GABRG2	intron	0.684	1.05570	0.0657	0.4091		-
rs17060038	5:161497295	A/G	GABRG2	intron	0.991	0.93267	0.0185	0.0001648		7
rs17060039	5:161498545	T/C	GABRG2	intron	0.991	0.93258	0.0185	0.0001588		6
rs17060077	5:161533433	T/G	GABRG2	intron	0.989	1.02624	0.0167	0.1206		7
rs17060096	5:161542609	A/G	GABRG2	intron	0.991	0.97453	0.0167	0.1226		7
rs17060101	5:161550426	A/G	GABRG2	intron	0.999	0.94611	0.0157	0.0004303		7
rs17060103	5:161552411	A/T	GABRG2	intron	0.987	0.94469	0.0160	0.0003661		6
rs17060106	5:161557953	A/C	GABRG2	intron	1.010	0.94696	0.0159	0.0006032		7
rs17060111	5:161565710	A/G	GABRG2	intron	1.000	1.06141	0.0163	0.0002531		7
rs17060112	5:161569089	A/G	GABRG2	intron	1.000	0.94667	0.0157	0.0004741		6
rs17060118	5:161572618	T/G	GABRG2	intron	1.010	0.94724	0.0157	0.0005582		7
rs17462431	5:161554382	T/C	GABRG2	intron	0.906	1.01420	0.0165	0.3934		6
rs17462459	5:161567167	T/C	GABRG2	intron	0.680	1.00451	0.0317	0.8873		7
rs17572158	5:161539027	C/G	GABRG2	intron	0.759	0.98857	0.0240	0.6305		6
rs17572310	5:161571228	A/G	GABRG2	intron	0.847	1.04728	0.0309	0.1346		6
rs183132610	5:161534208	A/G	GABRG2	intron	0.837	1.03811	0.0533	0.4824		-
rs189806221	5:161532853	T/C	GABRG2	intron	0.788	1.09505	0.0519	0.08053		-
rs209347	5:161505443	T/C	GABRG2	intron	0.881	1.01390	0.0133	0.298		7
rs209350	5:161510796	T/C	GABRG2	intron	0.946	1.01278	0.0134	0.342		7
rs209351	5:161511854	A/C	GABRG2	intron	0.935	1.00441	0.0149	0.7693		7
rs209352	5:161512960	C/G	GABRG2	intron	0.954	1.01440	0.0109	0.1892		7
rs209353	5:161517059	T/C	GABRG2	intron	0.960	0.98600	0.0108	0.195		7
rs209354	5:161517570	A/C	GABRG2	intron	0.959	0.98560	0.0109	0.1828		7
rs209356	5:161518984	A/G	GABRG2	intron	0.957	1.01349	0.0109	0.2171		6
rs209358	5:161519879	T/C	GABRG2	intron	0.955	1.01379	0.0109	0.2089		6
rs2103475	5:161535030	A/G	GABRG2	intron	1.000	1.00270	0.0110	0.8063		7
rs210980	5:161541508	T/C	GABRG2	intron	0.999	1.02276	0.0130	0.08459		7
rs210981	5:161541141	A/T	GABRG2	intron	1.000	1.01521	0.0107	0.1574		7
rs210982	5:161540289	C/G	GABRG2	intron	1.000	1.01461	0.0107	0.177		6
rs210983	5:161539134	C/G	GABRG2	intron	1.000	1.00592	0.0113	0.5994		7
rs210984	5:161537130	T/G	GABRG2	intron	1.000	1.02357	0.0130	0.07331		7
rs210987	5:161535755	T/C	GABRG2	intron	1.000	1.00200	0.0110	0.8588		7
rs210988	5:161535135	T/C	GABRG2	intron	1.000	0.97619	0.0130	0.06407		7
rs211013	5:161579441	A/G	GABRG2	intron	1.000	0.98639	0.0106	0.1935		6
rs211015	5:161575653	A/G	GABRG2	intron	1.000	1.03190	0.0108	0.003517		6
rs211016	5:161568111	T/C	GABRG2	intron	0.740	0.97677	0.0234	0.3151		7
rs211017	5:161522955	A/G	GABRG2	intron	0.917	0.96957	0.0140	0.0268		6
rs211029	5:161533066	T/C	GABRG2	intron	1.000	0.98620	0.0107	0.1907		7
rs211030	5:161530735	T/C	GABRG2	intron	1.000	1.00793	0.0114	0.4856		6
rs211034	5:161529720	A/G	GABRG2	intron	0.997	0.99144	0.0114	0.4496		7
rs211035	5:161529571	A/G	GABRG2	intron,missense	0.994	0.97472	0.0131	0.05003		7
rs211036	5:161529369	T/C	GABRG2	intron	1.000	0.98324	0.0108	0.117		6
rs211037	5:161528280	T/C	GABRG2	coding-synon	0.977	1.01400	0.0122	0.255		6
rs2178932	5:161505486	A/C	GABRG2	intron	0.956	1.07026	0.0182	0.0001983		7
rs2205364	5:161560132	C/G	GABRG2	intron	0.980	0.94374	0.0162	0.0003622		7
rs2223090	5:161533976	T/C	GABRG2	intron	0.995	1.02470	0.0130	0.06076		7
rs2268582	5:161515215	T/C	GABRG2	intron	0.951	1.00070	0.0161	0.9656		7
rs2268583	5:161495852	T/C	GABRG2	intron	0.990	1.07229	0.0185	0.0001616		5
rs2272600	5:161568940	A/T	GABRG2	intron	0.963	0.99870	0.0149	0.9301		7
rs2422106	5:161561803	T/G	GABRG2	intron	0.993	1.00985	0.0113	0.385		7
rs2910062	5:161510455	T/G	GABRG2	intron	0.917	1.05781	0.0232	0.01523		7
rs2910223	5:161523723	A/G	GABRG2	intron	0.949	1.01369	0.0109	0.2145		4
rs2963169	5:161523870	A/G	GABRG2	intron	0.947	0.98600	0.0110	0.1973		6
rs3219203	5:161494852	T/C	GABRG2	untranslated-5	0.906	0.97981	0.0216	0.3468		7
rs34281163	5:161529731	A/G	GABRG2	intron	0.904	0.98580	0.0145	0.3249		6
rs34354554	5:161560289	T/C	GABRG2	intron	0.873	0.98906	0.0159	0.4902		7
rs365054	5:161544331	A/G	GABRG2	intron	0.984	1.03852	0.0112	0.0007036		7
rs365359	5:161542855	A/G	GABRG2	intron	0.993	1.03407	0.0111	0.002514		6
rs3797860	5:161498797	A/G	GABRG2	intron	0.992	0.93267	0.0185	0.0001654		7
rs3797863	5:161499455	T/C	GABRG2	intron	0.991	0.93183	0.0185	0.0001347		6
rs3797866	5:161537083	A/C	GABRG2	intron	0.970	1.03056	0.0275	0.2747		6
rs387661	5:161543711	A/G	GABRG2	intron	0.992	0.99561	0.0153	0.7754		6
rs398690	5:161542811	A/G	GABRG2	intron	0.998	0.98472	0.0107	0.1492		7
rs41311629	5:161529631	T/G	GABRG2	intron,missense	0.986	1.02614	0.0175	0.1395		6
rs418210	5:161580983	T/C	GABRG2	untranslated-3	1.000	1.00733	0.0121	0.5431		7
rs424740	5:161581035	A/T	GABRG2	untranslated-3	1.000	1.02901	0.0108	0.007998		6
rs454888	5:161543974	T/C	GABRG2	intron	0.989	0.99780	0.0154	0.889		6
rs58125592	5:161513520	A/G	GABRG2	intron	0.946	1.00010	0.0161	0.9965		6
rs59516572	5:161534019	A/G	GABRG2	intron	0.988	1.02634	0.0174	0.1359		6
rs60873463	5:161503341	T/C	GABRG2	intron	0.906	0.97922	0.0217	0.3316		7
rs61009928	5:161513707	A/G	GABRG2	intron	0.946	1.00000	0.0161	0.9979		7
rs61536548	5:161500030	A/G	GABRG2	intron	0.902	0.98344	0.0215	0.4362		7
rs62381862	5:161557921	C/G	GABRG2	intron	0.608	1.00240	0.0398	0.9528		7
rs62381863	5:161562839	A/G	GABRG2	intron	0.783	0.98383	0.0295	0.5806		7
rs62384027	5:161500239	T/C	GABRG2	intron	0.906	1.01319	0.0172	0.4461		7
rs62384029	5:161503742	T/G	GABRG2	intron	0.906	0.97922	0.0217	0.3314		7
rs62384030	5:161508616	T/C	GABRG2	intron	0.899	1.01939	0.0216	0.3727		6
rs62384031	5:161510607	A/C	GABRG2	intron	0.904	1.01847	0.0216	0.3963		7
rs647625	5:161582777	A/G	GABRG2	near-gene-3	1.000	1.00672	0.0121	0.578		7
rs71612913	5:161555672	A/G	GABRG2	intron	0.746	0.97375	0.0587	0.651		7
rs72821315	5:161498297	A/G	GABRG2	intron	0.827	1.02747	0.0321	0.3996		6
rs72821320	5:161501647	A/G	GABRG2	intron	0.611	0.96996	0.0474	0.5196		7
rs72821329	5:161516403	A/G	GABRG2	intron	0.949	1.00110	0.0161	0.9477		6
rs72821353	5:161582924	T/C	GABRG2	near-gene-3	0.845	1.01959	0.0307	0.5284		7
rs74343174	5:161493182	A/C	GABRG2	near-gene-5	0.707	0.96590	0.0598	0.5615		7
rs74352187	5:161507183	T/G	GABRG2	intron	0.989	1.07197	0.0185	0.0001684		6
rs74731440	5:161563240	A/G	GABRG2	intron	0.682	1.00813	0.0693	0.9072		6
rs74776493	5:161555013	A/G	GABRG2	intron	0.893	1.00371	0.0224	0.8701		5
rs74808690	5:161534793	A/C	GABRG2	intron	0.988	1.02655	0.0175	0.1332		7
rs75010160	5:161536472	T/C	GABRG2	intron	0.991	1.02614	0.0167	0.1225		7
rs75179104	5:161566015	T/C	GABRG2	intron	0.913	1.04019	0.0283	0.1632		6
rs75357988	5:161568285	T/C	GABRG2	intron	0.774	0.97375	0.0449	0.5542		7
rs75491208	5:161556715	T/G	GABRG2	intron	0.844	0.94403	0.0562	0.3052		6
rs75801270	5:161498814	T/G	GABRG2	intron	0.904	1.03118	0.0363	0.3979		7
rs75844778	5:161570329	A/T	GABRG2	intron	0.864	1.03583	0.0558	0.5279		7
rs76029468	5:161525053	T/G	GABRG2	intron	0.725	1.01796	0.0241	0.4615		7
rs76051706	5:161557477	A/G	GABRG2	intron	1.000	0.94535	0.0158	0.0003622		7
rs76597502	5:161502312	A/C	GABRG2	intron	0.911	1.06067	0.0234	0.01186		6
rs76691350	5:161571947	A/G	GABRG2	intron	0.985	1.05855	0.0214	0.007791		6
rs76708111	5:161579772	A/G	GABRG2	intron	0.941	1.03190	0.0412	0.4456		7
rs76862095	5:161514388	T/C	GABRG2	intron	0.846	0.96880	0.0399	0.427		7
rs76872907	5:161525170	T/C	GABRG2	intron	0.871	0.99104	0.0299	0.763		6
rs77084045	5:161573492	C/G	GABRG2	intron	1.010	0.94459	0.0163	0.0004611		6
rs77758513	5:161570241	T/C	GABRG2	intron	0.940	0.96715	0.0413	0.4182		7
rs77795557	5:161569512	T/C	GABRG2	intron	0.940	0.96715	0.0413	0.4177		7
rs78148330	5:161555623	C/G	GABRG2	intron	0.986	0.94101	0.0165	0.0002366		7
rs78178962	5:161530153	T/C	GABRG2	intron	0.984	1.02614	0.0175	0.1387		7
rs78232630	5:161534982	T/C	GABRG2	intron	0.990	1.02644	0.0167	0.1172		7
rs78447120	5:161555198	T/C	GABRG2	intron	1.000	1.06078	0.0163	0.0002934		2b
rs78763781	5:161506923	T/C	GABRG2	intron	0.989	0.93277	0.0185	0.0001673		7
rs79263411	5:161560262	T/C	GABRG2	intron	0.935	1.03334	0.0416	0.4307		7
rs79877185	5:161560267	A/G	GABRG2	intron	0.979	1.09713	0.0263	0.0004187		7
rs80022355	5:161554400	A/T	GABRG2	intron	0.925	1.04404	0.0424	0.3095		7
rs80091100	5:161540007	A/G	GABRG2	intron	0.996	1.04415	0.0127	0.0006785		6
rs989694	5:161564481	A/G	GABRG2	intron	0.999	0.98590	0.0106	0.1789		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information