GABRA1

Basic Information

Gene Symbol	GABRA1
Entrez Id	2554
Position	chr5:161274197..161326965
Description	gamma-aminobutyric acid (GABA) A receptor, alpha 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10041985	5:161290981	C/G	GABRA1	intron	0.998	0.99760	0.0176	0.8898		6
rs10042696	5:161306771	T/C	GABRA1	intron	1.000	0.97006	0.0106	0.004249		5
rs10051659	5:161318132	A/G	GABRA1	intron	1.000	0.96541	0.0162	0.03008		7
rs10058095	5:161299989	T/C	GABRA1	intron	0.992	1.03097	0.0162	0.05944		6
rs10061231	5:161297160	T/C	GABRA1	intron	0.997	0.99601	0.0218	0.8561		7
rs10065822	5:161299920	A/G	GABRA1	intron	0.992	0.96996	0.0162	0.05954		6
rs10068911	5:161287794	A/G	GABRA1	intron	1.000	1.02286	0.0127	0.07552		7
rs10068980	5:161287847	A/G	GABRA1	intron	0.999	1.02501	0.0137	0.07114		6
rs1026447	5:161317770	T/C	GABRA1	intron	0.996	0.97922	0.0125	0.09174		7
rs1037715	5:161315769	T/C	GABRA1	intron	0.969	1.01248	0.0152	0.4149		7
rs10476366	5:161289948	C/G	GABRA1	intron	0.996	1.03458	0.0163	0.03665		7
rs113380972	5:161291258	T/C	GABRA1	intron	0.988	0.97697	0.0126	0.06345		7
rs113918482	5:161289270	A/G	GABRA1	intron	0.995	0.97863	0.0125	0.0836		7
rs114232830	5:161304186	A/G	GABRA1	intron	0.976	0.99154	0.0327	0.7958		7
rs114311794	5:161291420	C/G	GABRA1	intron	0.816	0.97658	0.0320	0.4587		7
rs114315666	5:161282492	T/C	GABRA1	intron	0.876	1.05527	0.0459	0.2407		6
rs114673806	5:161314068	A/T	GABRA1	intron	0.799	1.12042	0.0503	0.02385		6
rs114770400	5:161296465	T/C	GABRA1	intron	0.861	0.92072	0.0483	0.08716		6
rs114855369	5:161278928	T/C	GABRA1	intron	0.995	0.99770	0.0283	0.9356		2b
rs114890975	5:161292170	A/T	GABRA1	intron	0.784	0.98906	0.0311	0.7226		7
rs11575999	5:161273934	T/C	GABRA1	near-gene-5	0.964	0.99064	0.0110	0.3946		2b
rs116217029	5:161286314	T/C	GABRA1	intron	0.994	0.99730	0.0283	0.9239		6
rs116474757	5:161289895	A/G	GABRA1	intron	0.761	1.01066	0.0368	0.7741		6
rs11952776	5:161306618	T/C	GABRA1	intron	0.999	1.03479	0.0162	0.03543		5
rs11954343	5:161313682	T/C	GABRA1	intron	0.997	1.03210	0.0111	0.00434		7
rs11957740	5:161313686	A/G	GABRA1	intron	0.997	0.96899	0.0111	0.004391		7
rs11959044	5:161306450	C/G	GABRA1	intron	0.999	1.03479	0.0162	0.03544		6
rs12187575	5:161306946	A/C	GABRA1	intron	0.998	1.02071	0.0125	0.1007		4
rs12188495	5:161306537	T/C	GABRA1	intron	0.998	0.97971	0.0125	0.1006		6
rs12188970	5:161308529	T/C	GABRA1	intron	0.998	0.97981	0.0125	0.1017		7
rs12189424	5:161316596	A/G	GABRA1	intron	0.996	1.03283	0.0111	0.00356		7
rs12513890	5:161327187	T/C	GABRA1	near-gene-3	0.973	1.03541	0.0167	0.03748		6
rs12519029	5:161310902	A/G	GABRA1	intron	0.733	1.05012	0.0350	0.1617		6
rs12653365	5:161288624	T/C	GABRA1	intron	0.998	1.00150	0.0218	0.9439		6
rs12656605	5:161289850	T/C	GABRA1	intron	0.965	0.98629	0.0152	0.3619		7
rs12656701	5:161310255	C/G	GABRA1	intron	0.999	0.99651	0.0219	0.8741		7
rs12658807	5:161310002	A/G	GABRA1	intron	0.999	0.99671	0.0218	0.88		7
rs12658835	5:161275302	A/G	GABRA1	near-gene-5,untranslated-5	0.970	0.98246	0.0128	0.1664		5
rs12659175	5:161294490	T/C	GABRA1	intron	0.997	1.02081	0.0125	0.09886		7
rs12716387	5:161319595	T/C	GABRA1	intron	0.993	1.03283	0.0111	0.003521		6
rs13156895	5:161311369	A/G	GABRA1	intron	0.831	1.05064	0.0267	0.06486		6
rs1350372	5:161314125	A/G	GABRA1	intron	0.992	1.03241	0.0108	0.003026		6
rs1350376	5:161314238	T/G	GABRA1	intron	0.997	1.03210	0.0111	0.004353		6
rs142966678	5:161320051	A/T	GABRA1	intron	0.730	0.99144	0.0145	0.5536		-
rs145888916	5:161313235	A/T	GABRA1	intron	0.704	1.03977	0.0614	0.5256		-
rs148402115	5:161311597	T/G	GABRA1	intron	0.986	0.95190	0.0327	0.1322		-
rs150741509	5:161297327	A/G	GABRA1	intron	0.997	1.00391	0.0218	0.8576		-
rs17052610	5:161315812	T/C	GABRA1	intron	0.996	1.00321	0.0219	0.8829		7
rs17059797	5:161316935	T/C	GABRA1	intron	0.997	1.00471	0.0218	0.8284		7
rs17059827	5:161320751	C/G	GABRA1	intron	0.996	0.99591	0.0219	0.853		6
rs17545383	5:161322256	C/G	GABRA1	intron	0.999	1.03159	0.0106	0.003488		7
rs187378147	5:161285167	A/G	GABRA1	intron	0.713	0.92561	0.0679	0.2549		-
rs193081738	5:161314451	A/G	GABRA1	intron	0.794	0.97599	0.0446	0.5859		-
rs2279020	5:161322889	A/G	GABRA1	intron	0.996	0.96812	0.0111	0.003457		7
rs2279021	5:161323241	C/G	GABRA1	intron	1.000	1.03583	0.0162	0.03029		7
rs2290732	5:161324898	A/G	GABRA1	untranslated-3	0.998	1.03593	0.0109	0.00119		6
rs2290733	5:161326357	T/C	GABRA1	untranslated-3	0.894	0.94092	0.0378	0.1074		5
rs28422082	5:161310896	A/T	GABRA1	intron	0.977	1.04321	0.0164	0.009775		6
rs28489349	5:161320015	A/T	GABRA1	intron	0.856	1.02460	0.0115	0.03543		6
rs2901629	5:161319821	T/C	GABRA1	intron	0.986	1.03821	0.0165	0.02348		7
rs41275317	5:161317657	T/C	GABRA1	intron	0.762	1.05876	0.0450	0.2047		7
rs41275339	5:161277899	A/T	GABRA1	intron	0.994	0.99820	0.0219	0.9344		7
rs41304896	5:161292685	T/C	GABRA1	intron	0.997	1.02092	0.0125	0.09717		7
rs41315924	5:161325365	A/C	GABRA1	untranslated-3	0.999	1.00723	0.0283	0.7988		7
rs4144483	5:161323872	T/C	GABRA1	intron	0.968	1.00421	0.0217	0.8471		7
rs4254937	5:161297936	A/C	GABRA1	intron	1.000	0.97064	0.0106	0.004994		6
rs4259206	5:161313175	A/G	GABRA1	intron	0.998	0.96996	0.0106	0.004124		7
rs4260711	5:161302728	A/G	GABRA1	intron	1.000	1.03107	0.0107	0.004451		6
rs4263535	5:161284829	A/G	GABRA1	intron	0.994	0.97599	0.0136	0.07464		7
rs4340950	5:161280643	A/G	GABRA1	intron	0.994	0.96676	0.0163	0.0387		6
rs4346807	5:161309042	A/G	GABRA1	intron	1.000	0.97006	0.0107	0.004692		6
rs4364428	5:161297386	A/G	GABRA1	intron	0.996	1.03407	0.0163	0.03964		6
rs4367330	5:161284782	A/C	GABRA1	intron	0.995	0.96938	0.0107	0.003663		6
rs4428455	5:161302211	A/G	GABRA1	intron	0.932	0.99800	0.0115	0.8649		7
rs4437416	5:161290990	T/C	GABRA1	intron	0.941	1.03159	0.0193	0.1081		6
rs4446506	5:161297301	A/C	GABRA1	intron	0.998	0.97045	0.0106	0.004746		7
rs4554269	5:161313159	T/C	GABRA1	intron	0.998	0.96889	0.0111	0.004353		7
rs4605831	5:161290800	A/G	GABRA1	intron	0.995	1.02173	0.0125	0.08536		7
rs4608967	5:161275413	T/C	GABRA1	near-gene-5,untranslated-5	0.991	1.03252	0.0166	0.05291		5
rs4921199	5:161309303	A/G	GABRA1	intron	1.000	0.97015	0.0107	0.00476		6
rs4921425	5:161276307	A/G	GABRA1	intron,near-gene-5	0.990	1.00070	0.0219	0.9758		7
rs60669065	5:161281462	A/T	GABRA1	intron	0.958	0.99521	0.0281	0.8628		7
rs60768803	5:161286802	A/G	GABRA1	intron	0.996	1.03572	0.0162	0.03076		6
rs62381655	5:161297435	T/C	GABRA1	intron	0.926	0.99890	0.0115	0.9216		7
rs62381656	5:161307592	A/C	GABRA1	intron	0.739	0.97025	0.0253	0.2328		7
rs6556562	5:161305709	A/G	GABRA1	intron	1.000	0.97074	0.0107	0.005646		7
rs66561514	5:161313741	A/C	GABRA1	intron	0.978	1.03283	0.0112	0.003943		6
rs6866984	5:161297795	A/G	GABRA1	intron	0.997	1.02552	0.0137	0.06644		7
rs6867604	5:161321006	A/G	GABRA1	intron	0.996	0.96822	0.0111	0.003556		6
rs6878494	5:161305071	T/C	GABRA1	intron	1.000	1.03066	0.0106	0.004419		5
rs6883877	5:161278338	T/C	GABRA1	intron	0.965	1.07358	0.0318	0.02584		7
rs6889687	5:161321054	A/T	GABRA1	intron	0.981	0.99760	0.0217	0.9105		6
rs6894357	5:161300806	A/G	GABRA1	intron	0.998	1.03066	0.0108	0.005011		7
rs6894517	5:161321468	A/C	GABRA1	intron	1.000	0.96503	0.0162	0.02832		6
rs72817495	5:161282839	A/T	GABRA1	intron	0.936	0.98020	0.0151	0.1837		6
rs72819304	5:161297529	T/C	GABRA1	intron	0.927	1.00230	0.0488	0.9625		7
rs72819308	5:161299922	A/T	GABRA1	intron	0.997	0.97990	0.0125	0.1038		6
rs72819310	5:161301458	T/C	GABRA1	intron	1.000	0.96996	0.0107	0.004501		6
rs72819314	5:161306000	A/G	GABRA1	intron	0.969	1.01197	0.0152	0.4333		6
rs72819329	5:161320054	A/T	GABRA1	intron	0.773	0.97599	0.0127	0.05549		6
rs73314905	5:161299017	A/G	GABRA1	intron	0.992	0.97006	0.0162	0.0608		7
rs73314909	5:161299335	A/C	GABRA1	intron	0.991	0.97006	0.0162	0.06097		7
rs74570926	5:161285066	C/G	GABRA1	intron	0.993	0.99800	0.0211	0.9249		6
rs74869118	5:161279830	T/G	GABRA1	intron	0.995	1.00090	0.0218	0.9664		7
rs75031502	5:161289111	A/T	GABRA1	intron	0.997	1.00230	0.0218	0.9147		6
rs75126767	5:161289763	A/G	GABRA1	intron	0.995	1.00401	0.0282	0.8872		7
rs75355173	5:161289292	A/T	GABRA1	intron	0.998	1.00180	0.0218	0.9342		7
rs75585382	5:161315268	T/G	GABRA1	intron	0.955	1.01959	0.0260	0.4536		6
rs75624480	5:161298082	A/G	GABRA1	intron	0.992	1.00491	0.0280	0.8615		7
rs76226193	5:161299378	T/G	GABRA1	intron	0.988	1.00793	0.0222	0.7217		6
rs76353036	5:161285072	A/G	GABRA1	intron	0.993	1.00200	0.0211	0.9249		6
rs76725682	5:161322191	A/G	GABRA1	intron	0.682	0.93109	0.0637	0.262		7
rs76960711	5:161310675	T/C	GABRA1	intron	1.000	1.00602	0.0282	0.8322		7
rs76984572	5:161287014	T/C	GABRA1	intron	0.997	1.00230	0.0218	0.9166		7
rs7701975	5:161289532	A/G	GABRA1	intron	0.998	0.99820	0.0218	0.9327		6
rs77105946	5:161310205	A/G	GABRA1	intron	0.994	1.04133	0.0325	0.2128		7
rs77199840	5:161286791	A/G	GABRA1	intron	0.996	0.99601	0.0218	0.853		7
rs77311212	5:161280142	C/G	GABRA1	intron	0.995	0.99920	0.0218	0.9694		6
rs77332276	5:161272845	A/G	GABRA1	near-gene-5	0.983	0.96551	0.0167	0.03564		6
rs77445936	5:161316875	T/C	GABRA1	intron	0.895	0.94120	0.0378	0.1092		7
rs77662355	5:161312479	A/G	GABRA1	intron	0.868	1.06620	0.0375	0.08763		7
rs77748393	5:161273013	T/C	GABRA1	near-gene-5	0.988	1.00120	0.0220	0.9558		7
rs78173305	5:161279142	A/G	GABRA1	intron	0.824	1.04216	0.0328	0.2078		5
rs78446575	5:161272967	A/G	GABRA1	near-gene-5	0.993	0.97103	0.0149	0.04791		7
rs78611674	5:161311241	A/G	GABRA1	intron	0.999	0.99322	0.0282	0.808		6
rs78679936	5:161299902	A/G	GABRA1	intron	0.768	1.01786	0.0173	0.3062		7
rs78780623	5:161278406	A/G	GABRA1	intron	0.994	0.99910	0.0218	0.9689		7
rs78782356	5:161322654	T/C	GABRA1	intron	0.996	0.99511	0.0219	0.8218		6
rs78870988	5:161284079	T/C	GABRA1	intron	0.996	1.00140	0.0218	0.9493		7
rs78969399	5:161309179	T/C	GABRA1	intron	0.956	0.97113	0.0192	0.1273		7
rs78983363	5:161272435	A/G	GABRA1	near-gene-5	0.967	0.97590	0.0192	0.2041		6
rs79604140	5:161310408	T/G	GABRA1	intron	0.988	1.00130	0.0218	0.9537		7
rs80160310	5:161299607	A/G	GABRA1	intron	0.987	1.00823	0.0223	0.7131		7
rs80249395	5:161310895	A/T	GABRA1	intron	0.983	1.03946	0.0165	0.01883		6
rs980790	5:161318123	A/G	GABRA1	intron	0.998	0.99342	0.0282	0.8141		6
rs998754	5:161325934	A/C	GABRA1	untranslated-3	0.998	1.03541	0.0109	0.001372		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information