FXR1

Basic Information

Gene Symbol	FXR1
Entrez Id	8087
Position	chr3:180630234..180700541
Description	fragile X mental retardation, autosomal homolog 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1010471	3:180691092	A/G	FXR1	intron	0.994	0.94895	0.0110	1.994E-6		7
rs10490806	3:180654807	A/G	FXR1	intron	0.999	1.08806	0.0132	1.842E-10		6
rs112214547	3:180656393	A/G	FXR1	intron	0.813	1.01867	0.0549	0.7356		7
rs112377358	3:180656837	A/C	FXR1	intron	0.987	1.00290	0.0575	0.9601		7
rs114020431	3:180631536	T/C	FXR1	intron	0.825	0.93594	0.0467	0.1567		5
rs114321351	3:180639633	A/G	FXR1	intron	0.877	0.88144	0.0377	0.0008104		7
rs114504511	3:180630661	T/G	FXR1	intron	0.809	1.04907	0.0385	0.2137		2b
rs114722491	3:180662622	A/G	FXR1	intron	0.953	1.04415	0.0343	0.2079		7
rs114775573	3:180652155	A/T	FXR1	intron	0.670	1.08752	0.0489	0.08613		6
rs114793510	3:180647631	A/G	FXR1	intron	0.770	0.94961	0.0306	0.09043		6
rs114795645	3:180693801	A/T	FXR1	intron	0.815	0.94148	0.0510	0.2369		7
rs114861634	3:180654456	A/G	FXR1	intron	0.836	1.15604	0.0516	0.004931		7
rs115136515	3:180635794	T/G	FXR1	intron	0.685	0.95935	0.0629	0.5094		6
rs115497341	3:180682659	A/G	FXR1	intron	0.953	1.04404	0.0343	0.2092		7
rs115555658	3:180647698	A/G	FXR1	intron	0.942	0.99302	0.0293	0.8115		7
rs115602974	3:180667741	C/G	FXR1	intron	0.816	1.06194	0.0510	0.2381		5
rs115725483	3:180632107	A/T	FXR1	intron	0.809	0.95361	0.0385	0.2174		7
rs115732722	3:180691034	A/G	FXR1	intron	0.802	1.04561	0.0537	0.4067		6
rs116270642	3:180637281	T/C	FXR1	intron	0.676	0.90375	0.0440	0.02144		7
rs116480876	3:180700838	A/C	FXR1	near-gene-3	0.721	0.89933	0.0585	0.0697		5
rs116541820	3:180655018	A/G	FXR1	intron	0.946	0.91613	0.0480	0.06801		6
rs116548954	3:180666067	T/G	FXR1	intron	0.809	1.05012	0.0384	0.2026		5
rs11717953	3:180637665	A/G	FXR1	intron	1.000	1.08796	0.0132	1.811E-10		7
rs12186104	3:180664162	A/G	FXR1	intron	0.999	1.08796	0.0132	1.967E-10		7
rs13071004	3:180659905	A/G	FXR1	intron	0.990	1.08459	0.0130	4.449E-10		6
rs13071962	3:180660155	A/G	FXR1	intron	0.981	0.91943	0.0135	5.679E-10		7
rs13076861	3:180687598	A/T	FXR1	intron	0.943	0.91402	0.0144	4.079E-10		6
rs13083851	3:180662287	A/T	FXR1	intron	0.990	1.08632	0.0134	5.669E-10		6
rs13093137	3:180651723	A/C	FXR1	intron	0.993	0.91943	0.0132	2.204E-10		6
rs13095562	3:180660778	T/C	FXR1	intron	0.992	1.08350	0.0129	5.544E-10		6
rs13097727	3:180651870	C/G	FXR1	intron	0.999	1.08817	0.0132	1.709E-10		6
rs142396666	3:180645093	A/G	FXR1	intron	0.732	1.02922	0.0461	0.5322		-
rs144257835	3:180650411	T/C	FXR1	intron	0.913	1.00441	0.0559	0.9367		-
rs146430148	3:180630179	A/C	FXR1	coding-synon,near-gene-5	0.664	0.95983	0.0587	0.485		-
rs148111524	3:180663434	A/G	FXR1	intron	0.924	1.04739	0.0341	0.1752		-
rs149096577	3:180695631	T/C	FXR1	untranslated-3	0.688	1.04970	0.0622	0.4355		-
rs150702173	3:180649045	T/C	FXR1	intron	0.804	0.94535	0.0555	0.3108		-
rs151005037	3:180656814	T/C	FXR1	intron	0.868	0.89915	0.0579	0.06651		-
rs16832165	3:180641664	A/G	FXR1	intron	1.000	1.08524	0.0130	3.166E-10		6
rs16832224	3:180698181	T/G	FXR1	untranslated-3	0.969	1.00592	0.0570	0.9172		6
rs1715519	3:180648370	A/G	FXR1	intron	0.612	1.09691	0.0585	0.114		7
rs17537540	3:180651922	A/G	FXR1	intron	0.679	1.02798	0.0531	0.6036		5
rs1805562	3:180629399	T/G	FXR1	near-gene-5	0.998	0.91925	0.0132	1.974E-10		7
rs1805563	3:180632126	T/G	FXR1	intron	1.000	1.08546	0.0130	2.866E-10		7
rs1805564	3:180633485	A/G	FXR1	intron	0.999	0.91888	0.0132	1.589E-10		5
rs1805565	3:180635936	A/G	FXR1	intron	0.998	1.01005	0.0146	0.4935		7
rs1805567	3:180639252	A/G	FXR1	intron	0.999	1.08796	0.0132	1.83E-10		7
rs1805568	3:180644984	A/T	FXR1	intron	0.994	1.00944	0.0571	0.8698		7
rs1805569	3:180646027	T/C	FXR1	intron	0.999	0.92182	0.0130	3.909E-10		6
rs1805571	3:180646631	A/G	FXR1	intron	0.996	0.91971	0.0134	3.714E-10		6
rs1805572	3:180647263	T/C	FXR1	intron	1.000	1.08578	0.0130	2.487E-10		6
rs1805573	3:180657880	T/C	FXR1	intron	0.996	0.91851	0.0133	1.575E-10		7
rs1805574	3:180658176	T/C	FXR1	intron	0.998	1.08785	0.0132	1.974E-10		6
rs1805575	3:180667559	A/G	FXR1	intron	0.754	1.03066	0.0493	0.5403		6
rs1805576	3:180667565	C/G	FXR1	intron	1.010	1.08405	0.0130	4.784E-10		6
rs1805577	3:180668111	C/G	FXR1	intron	0.997	1.08709	0.0133	2.953E-10		7
rs1805579	3:180630565	T/C	FXR1	intron	0.998	1.08839	0.0132	1.561E-10		2b
rs1805584	3:180632030	T/C	FXR1	intron	0.999	1.08817	0.0132	1.682E-10		5
rs1805585	3:180632315	A/G	FXR1	intron	0.764	1.04812	0.0227	0.03811		6
rs1805589	3:180647410	T/C	FXR1	intron	1.000	0.91906	0.0132	1.802E-10		5
rs1805592	3:180658848	A/G	FXR1	intron	0.779	1.13496	0.0415	0.002255		6
rs1805596	3:180661589	T/C	FXR1	intron	0.834	1.17316	0.0517	0.002027		7
rs1805599	3:180665942	A/G	FXR1	intron	0.999	0.92173	0.0130	3.825E-10		5
rs1805602	3:180671319	T/C	FXR1	intron	0.802	1.13428	0.0423	0.002875		6
rs1805603	3:180673354	T/C	FXR1	intron	0.996	1.08480	0.0130	4.288E-10		6
rs1805604	3:180673936	T/C	FXR1	intron	0.995	0.91943	0.0133	2.33E-10		7
rs1805605	3:180673962	C/G	FXR1	intron	0.995	1.08774	0.0133	2.33E-10		6
rs1805606	3:180693504	T/C	FXR1	intron	0.994	0.91952	0.0133	2.532E-10		5
rs1805612	3:180673193	A/G	FXR1	intron	0.845	0.89592	0.0348	0.001581		7
rs1805614	3:180673421	T/C	FXR1	intron	0.948	0.91677	0.0237	0.0002499		7
rs1805620	3:180680013	C/G	FXR1	intron	0.779	0.95724	0.0216	0.04306		7
rs1805626	3:180693740	C/G	FXR1	intron	0.907	0.96909	0.0252	0.2123		7
rs1805627	3:180695991	T/C	FXR1	untranslated-3	0.987	1.00100	0.0572	0.9856		6
rs1805632	3:180699715	A/G	FXR1	untranslated-3	0.955	1.04196	0.0341	0.2271		5
rs182054150	3:180685453	A/T	FXR1	intron	0.803	0.88197	0.0423	0.002961		-
rs189381948	3:180661956	T/C	FXR1	intron	0.685	1.04227	0.0629	0.5112		-
rs189930393	3:180653840	T/G	FXR1	intron	0.640	0.99531	0.0557	0.9324		-
rs28544188	3:180649595	T/C	FXR1	intron	0.978	1.08340	0.0134	2.371E-9		7
rs3026189	3:180631260	A/T	FXR1	intron	0.993	1.00321	0.0574	0.956		5
rs3026201	3:180690728	T/C	FXR1	intron	0.747	1.14454	0.0488	0.005634		7
rs34161981	3:180641807	T/C	FXR1	intron	0.999	0.91925	0.0132	1.929E-10		6
rs34312705	3:180629092	T/G	FXR1	near-gene-5	0.995	0.91952	0.0133	2.92E-10		7
rs34455584	3:180630191	A/G	FXR1	coding-synon,near-gene-5	0.999	1.08502	0.0130	3.048E-10		4
rs35080573	3:180649596	A/G	FXR1	intron	0.975	1.08524	0.0137	2.174E-9		7
rs35751112	3:180672927	T/C	FXR1	intron	0.995	0.91934	0.0133	2.307E-10		7
rs35815802	3:180678965	A/G	FXR1	intron	0.994	1.08763	0.0133	2.422E-10		6
rs474048	3:180643165	A/G	FXR1	intron	0.986	1.02932	0.0107	0.006908		5
rs479475	3:180670598	A/T	FXR1	intron	0.883	0.94026	0.0121	3.476E-7		6
rs482840	3:180647762	A/G	FXR1	intron	0.998	0.98955	0.0146	0.4721		7
rs484550	3:180647920	A/G	FXR1	intron	0.995	1.01096	0.0147	0.4572		7
rs484824	3:180663205	T/C	FXR1	intron	0.979	0.99920	0.0158	0.9597		6
rs512735	3:180638491	A/G	FXR1	intron	0.998	1.01005	0.0146	0.4927		7
rs519618	3:180664670	T/C	FXR1	intron	0.973	1.00521	0.0212	0.8079		7
rs524005	3:180658544	A/G	FXR1	intron	0.986	0.94800	0.0111	1.436E-6		7
rs62291394	3:180589804	A/G	FXR1	near-gene-5	0.991	0.91888	0.0132	1.712E-10		5
rs62291429	3:180635661	A/G	FXR1	intron	0.834	0.94942	0.0301	0.08491		7
rs62291430	3:180636246	A/G	FXR1	intron	0.981	1.09002	0.0240	0.0003205		5
rs62291435	3:180696550	A/G	FXR1	untranslated-3	0.994	1.08741	0.0133	2.737E-10		5
rs73055760	3:180637303	A/C	FXR1	intron	0.933	0.96783	0.0577	0.5712		7
rs73176330	3:180669208	T/C	FXR1	coding-synon	0.641	1.00562	0.0701	0.9365		7
rs73884124	3:180682385	A/G	FXR1	intron	0.990	1.00763	0.0147	0.608		5
rs74974410	3:180650427	A/G	FXR1	intron	0.780	1.13519	0.0415	0.002227		7
rs75562397	3:180641861	T/C	FXR1	intron	0.726	1.00803	0.0311	0.7959		6
rs75992703	3:180589080	A/C	FXR1	near-gene-5	0.761	1.14625	0.0649	0.03539		5
rs76978300	3:180675805	A/T	FXR1	intron	0.688	1.04970	0.0622	0.4353		7
rs77618140	3:180664716	A/G	FXR1	intron	0.646	0.95161	0.0438	0.2579		7
rs77837544	3:180683365	T/C	FXR1	intron	0.803	1.04383	0.0321	0.1819		5
rs78126424	3:180636967	A/G	FXR1	intron	0.616	0.91320	0.0344	0.008325		5
rs78860730	3:180669835	A/T	FXR1	intron	0.862	1.01217	0.0524	0.8171		6
rs80057905	3:180630672	T/C	FXR1	intron	0.787	1.05548	0.0476	0.2562		2b
rs875250	3:180588841	T/G	FXR1	near-gene-5	0.991	0.91916	0.0133	2.049E-10		5
rs9821651	3:180589861	A/G	FXR1	near-gene-5	0.869	0.97404	0.0525	0.617		5
rs9829808	3:180637323	C/G	FXR1	intron	0.993	1.00823	0.0576	0.8869		6
rs9835573	3:180668722	T/C	FXR1	intron	0.772	1.02480	0.0439	0.5771		6
rs9855564	3:180638545	T/C	FXR1	intron	0.994	1.00331	0.0573	0.9542		7
rs9859769	3:180638885	T/C	FXR1	intron	1.000	1.08535	0.0130	3.009E-10		7
rs9873302	3:180668778	A/G	FXR1	intron	0.987	1.00783	0.0575	0.8917		7
rs9879060	3:180664042	A/G	FXR1	intron	1.000	1.08524	0.0130	3.32E-10		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information