FAM53C

Basic Information

Gene Symbol	FAM53C
Entrez Id	51307
Position	chr5:137673224..137685418
Description	family with sequence similarity 53, member C
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10045661	5:137679642	A/G	FAM53C	intron	0.966	0.93923	0.0118	1.159E-7		5
rs10900851	5:137681986	A/C	FAM53C	intron	1.000	0.93538	0.0120	2.535E-8		5
rs10900852	5:137682050	A/C	FAM53C	intron	0.894	0.94158	0.0169	0.0003652		6
rs116578300	5:137674419	A/G	FAM53C	intron,near-gene-5	0.895	1.10241	0.0325	0.002681		2b
rs140678682	5:137679289	T/C	FAM53C	intron	0.759	1.02665	0.0635	0.6785		-
rs144395755	5:137676219	C/G	FAM53C	intron	0.782	0.84823	0.0621	0.008014		-
rs17171802	5:137675306	T/C	FAM53C	intron,near-gene-5	0.859	1.00552	0.0295	0.8527		4
rs2107675	5:137674627	T/C	FAM53C	intron,near-gene-5	0.998	0.99054	0.0138	0.4909		4
rs2269953	5:137682714	T/G	FAM53C	untranslated-3	1.000	1.03035	0.0108	0.005859		5
rs2286060	5:137677224	A/C	FAM53C	intron	1.000	0.96483	0.0133	0.007033		5
rs35965145	5:137679078	A/T	FAM53C	intron	1.000	1.02562	0.0110	0.02077		6
rs4835780	5:137679313	C/G	FAM53C	intron	1.000	0.97064	0.0108	0.005919		5
rs62380929	5:137674443	A/T	FAM53C	intron,near-gene-5	0.990	1.00511	0.0138	0.7091		4
rs62380931	5:137680037	A/G	FAM53C	intron	0.998	0.99015	0.0139	0.4768		5
rs76484728	5:137682225	A/G	FAM53C	intron	1.000	1.03645	0.0133	0.007138		7
rs79711534	5:137676055	A/T	FAM53C	intron	0.895	1.10252	0.0325	0.002665		5
rs80195213	5:137675989	C/G	FAM53C	intron,near-gene-5	0.895	1.10252	0.0325	0.002663		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
22196331	GWAS	177 cases; 436 controls
Reference	Study type	Sample size

eQTL Information